Taco Jesse
@tjngs.bsky.social
New Horizons in [Plant🌱 ] Genomics. Next Generation Sequencing. Genome Assembly. Vegetable 🥬 Breeding. LongReads. DNA+RNAseq 🧬 .
Check out
The Golden Elephant 🐘
@nanopore
January 17, 2024 at 6:24 PM
Check out
The Golden Elephant 🐘
@nanopore
Reposted by Taco Jesse
Schrödinger’s dumpster
January 15, 2024 at 9:30 PM
Schrödinger’s dumpster
Reposted by Taco Jesse
SEER at JPM24. Bridging the gap between old-school Mass Spec proteomics and Next-Gen Proteomics #NGPS open.substack.com/pub/albertvi...
SEER at JPM24
SEER inc. is a company that bridges the gap between classic Mass Spec-based proteomics and Next-Generation Proteomics techniques by improving the sample using their Proteograph technology before putti...
open.substack.com
January 15, 2024 at 10:34 AM
SEER at JPM24. Bridging the gap between old-school Mass Spec proteomics and Next-Gen Proteomics #NGPS open.substack.com/pub/albertvi...
Reposted by Taco Jesse
We are excited to release v1.0 of our HG002 genome benchmark today! Our goal with the Q100 project is to create a complete and perfectly accurate representation of the diploid HG002 genome to serve as a replacement for current variant-based benchmarks. More info here: github.com/marbl/HG002
GitHub - marbl/HG002: A complete diploid human genome
A complete diploid human genome. Contribute to marbl/HG002 development by creating an account on GitHub.
github.com
October 31, 2023 at 10:09 PM
We are excited to release v1.0 of our HG002 genome benchmark today! Our goal with the Q100 project is to create a complete and perfectly accurate representation of the diploid HG002 genome to serve as a replacement for current variant-based benchmarks. More info here: github.com/marbl/HG002
January 15, 2024 at 6:42 PM
MEGA ReadLengths 🧬
Mb — Mb — Mb
🎊 WATCH THIS !!! 🎊
January 15, 2024 at 6:31 PM
MEGA ReadLengths 🧬
Mb — Mb — Mb
🎊 WATCH THIS !!! 🎊
Reposted by Taco Jesse
Great line-up of speakers in @nanopore #PAG31 workshop. You don’t want to miss @keygene.com presenting on the 🍌 pangenome. Details: nanoporetech.com/about/events...
500 - | Nuxt
https://nanoporetech.com/about/events/c…
January 9, 2024 at 9:33 PM
Great line-up of speakers in @nanopore #PAG31 workshop. You don’t want to miss @keygene.com presenting on the 🍌 pangenome. Details: nanoporetech.com/about/events...
Reposted by Taco Jesse
Telomere length is vital to understanding human health, but current methods for measuring them leave much to be desired. A new preprint from Carol Greider describes a direct nanopore telomere profiling assay using ONT that is precise and cost effective, with applications in research and the clinic.
Human telomere length is chromosome specific and conserved across individuals https://www.biorxiv.org/content/10.1101/2023.12.21.572870v1
Human telomere length is chromosome specific and conserved across individuals https://www.biorxiv.org/content/10.1101/2023.12.21.572870v1
Short telomeres cause age-related disease and long telomeres predispose to cancer; however, the mech
www.biorxiv.org
January 11, 2024 at 8:38 PM
Telomere length is vital to understanding human health, but current methods for measuring them leave much to be desired. A new preprint from Carol Greider describes a direct nanopore telomere profiling assay using ONT that is precise and cost effective, with applications in research and the clinic.
Reposted by Taco Jesse
Two posts in one day for some #MLKDay reading today: Nvidia and the biological revolution at JPM24 open.substack.com/pub/albertvi...
Nvidia and the biological revolution at JPM24
Nvidia presented at JP Morgan Healthcare 2024 and I’ll describe my highlights from the presentation below. They also had a Fireside chat at JP Morgan CES with an emphasis on what Nvidia calls the ��...
open.substack.com
January 15, 2024 at 3:42 PM
Two posts in one day for some #MLKDay reading today: Nvidia and the biological revolution at JPM24 open.substack.com/pub/albertvi...
Reposted by Taco Jesse
Impact of genome build on RNA-seq interpretation and diagnostics www.medrxiv.org/content/10.1... 🧬🖥️
January 15, 2024 at 10:03 AM
Impact of genome build on RNA-seq interpretation and diagnostics www.medrxiv.org/content/10.1... 🧬🖥️
Reposted by Taco Jesse
Another preprint comparing different #SpatialBiology technologies just published. I'll cover it in a long-form post in the next few days.
January 15, 2024 at 11:28 AM
Another preprint comparing different #SpatialBiology technologies just published. I'll cover it in a long-form post in the next few days.
Some typical LongReads
Thank you @nanopore !
Thank you @nanopore !
January 14, 2024 at 7:20 PM
Some typical LongReads
Thank you @nanopore !
Thank you @nanopore !
Reposted by Taco Jesse
We've put out a new version of readfish, our tool for Nanopore adaptive sampling. This is our v1.0 release and has a lot of improvements, tweaks and stability issues addressed. It has been in testing for a long time and works with all ONT platforms github.com/looselab/rea....
GitHub - LooseLab/readfish: CLI tool for flexible and fast adaptive sampling on ONT sequencers
CLI tool for flexible and fast adaptive sampling on ONT sequencers - GitHub - LooseLab/readfish: CLI tool for flexible and fast adaptive sampling on ONT sequencers
github.com
November 9, 2023 at 11:35 AM
We've put out a new version of readfish, our tool for Nanopore adaptive sampling. This is our v1.0 release and has a lot of improvements, tweaks and stability issues addressed. It has been in testing for a long time and works with all ONT platforms github.com/looselab/rea....
Reposted by Taco Jesse
The “telly don” dilemma—If an academic is too popular, they’re accused of dumbing down their subject, attention-seeking types. If they remain too aloof, they become the “elitist intellectual” separated from the real life issues of society #AcademicSky winnipegpublibrary.wordpress.com/2012/03/16/w...
Watching the “telly dons”
The British media with their flair for nasty nicknames call them "telly dons" -- quasi-celebrity academics and writers who work and publish in the high circles of top universities in the U.K. and the ...
winnipegpublibrary.wordpress.com
January 14, 2024 at 8:50 AM
The “telly don” dilemma—If an academic is too popular, they’re accused of dumbing down their subject, attention-seeking types. If they remain too aloof, they become the “elitist intellectual” separated from the real life issues of society #AcademicSky winnipegpublibrary.wordpress.com/2012/03/16/w...
Reposted by Taco Jesse
SeedWorld article about apomixis for plant breeding: Big Steps Towards Plant Breeding’s Holy Grail: Apomixis. An interview with Mary Gehring of MIT and KeyGene's Rik Op den Camp about the progress, genetics and perspectives for variety development
www.seedworld.com/big-steps-to...
www.seedworld.com/big-steps-to...
Big Steps Towards Plant Breeding’s Holy Grail: Apomixis - Seed World US
While apomixis has been pursued by plant breeders for decades, it has until now been far out of reach. Several major research breakthroughs recently, however, mean apomixis is much closer than ever t...
www.seedworld.com
November 23, 2023 at 12:46 PM
SeedWorld article about apomixis for plant breeding: Big Steps Towards Plant Breeding’s Holy Grail: Apomixis. An interview with Mary Gehring of MIT and KeyGene's Rik Op den Camp about the progress, genetics and perspectives for variety development
www.seedworld.com/big-steps-to...
www.seedworld.com/big-steps-to...
Hope to Meet up
For our Next Mission ! 🚀
For our Next Mission ! 🚀
January 13, 2024 at 11:58 AM
Hope to Meet up
For our Next Mission ! 🚀
For our Next Mission ! 🚀
Excellent Curve
of the LongReadMaster
The Golden Elephant Curve
Thank you ONT !
@nanopore
of the LongReadMaster
The Golden Elephant Curve
Thank you ONT !
@nanopore
January 13, 2024 at 11:55 AM
Excellent Curve
of the LongReadMaster
The Golden Elephant Curve
Thank you ONT !
@nanopore
of the LongReadMaster
The Golden Elephant Curve
Thank you ONT !
@nanopore
Reposted by Taco Jesse
Come hear what my group has been doing with the
Illumina #DRAGEN to advance low cost/high throughput genotyping at #PAG31 during the Illumina Workshop Monday 1/15, 4-6pm Room Palm 5-6. See Y'all there! www.illumina.com/events/confe...
Illumina #DRAGEN to advance low cost/high throughput genotyping at #PAG31 during the Illumina Workshop Monday 1/15, 4-6pm Room Palm 5-6. See Y'all there! www.illumina.com/events/confe...
January 9, 2024 at 3:44 PM
Come hear what my group has been doing with the
Illumina #DRAGEN to advance low cost/high throughput genotyping at #PAG31 during the Illumina Workshop Monday 1/15, 4-6pm Room Palm 5-6. See Y'all there! www.illumina.com/events/confe...
Illumina #DRAGEN to advance low cost/high throughput genotyping at #PAG31 during the Illumina Workshop Monday 1/15, 4-6pm Room Palm 5-6. See Y'all there! www.illumina.com/events/confe...
Reposted by Taco Jesse
Element's JPM comments by Molly He, CEO and Co-Founder.. www.elementbiosciences.com/news/element...
January 10, 2024 at 7:51 PM
Element's JPM comments by Molly He, CEO and Co-Founder.. www.elementbiosciences.com/news/element...
January 13, 2024 at 11:44 AM
Reposted by Taco Jesse
"NLRome dataset from 124 genomes of plants in the Solanaceae family" by @YuSugiharaY @amiralito_ @JiorgosKourelis #OpenPlantNLR #NLRbiology #plantscience doi.org/10.5281/zeno...
NLRome dataset from 124 genomes of plants in the Solanaceae family
We report a dataset of 66,665 NLR immune receptor sequences extracted using NLRtracker from the proteomes of 124 genomes of plants in the Solanaceae family. These include samples from the following ge...
doi.org
January 10, 2024 at 10:22 AM
"NLRome dataset from 124 genomes of plants in the Solanaceae family" by @YuSugiharaY @amiralito_ @JiorgosKourelis #OpenPlantNLR #NLRbiology #plantscience doi.org/10.5281/zeno...
Hi Bluesky!
Looking forward to explore this new medium!
Cheers,
Taco Jesse
Looking forward to explore this new medium!
Cheers,
Taco Jesse
January 13, 2024 at 9:57 AM
Hi Bluesky!
Looking forward to explore this new medium!
Cheers,
Taco Jesse
Looking forward to explore this new medium!
Cheers,
Taco Jesse
Reposted by Taco Jesse
In #NextGenSequencing news, on the long-reads capable technologies, the serial number est. have now broken above the 1,000 mark for $ONTTF P2 PromethION instruments (1,049). This entire fleet now matches the throughput of the updated fleet of $PACB Revios (173).
January 10, 2024 at 10:53 AM
In #NextGenSequencing news, on the long-reads capable technologies, the serial number est. have now broken above the 1,000 mark for $ONTTF P2 PromethION instruments (1,049). This entire fleet now matches the throughput of the updated fleet of $PACB Revios (173).
Reposted by Taco Jesse
Illumina at JPM24 open.substack.com/pub/albertvi...
Illumina at JPM24
Here are my highlights of the presentation that Illumina gave at JP Morgan in 2024. As an intro, Illumina is a Life Science Tools company that sells Next-Generation Sequencing (NGS) instruments and re...
open.substack.com
January 10, 2024 at 11:50 AM
Illumina at JPM24 open.substack.com/pub/albertvi...