@teamline1.bsky.social
Reposted
Still looking for good locus-specific TE expression packages (TElocal)? Or single-cell/nuc RNA-seq analysis packages (TEsingle)? We've made those available prior to publication with lots of annotation files for your favorite genome build
GitHub links are at our website: www.mghlab.org/software
GitHub links are at our website: www.mghlab.org/software
Software — MGH Lab
www.mghlab.org
November 18, 2024 at 11:41 PM
Still looking for good locus-specific TE expression packages (TElocal)? Or single-cell/nuc RNA-seq analysis packages (TEsingle)? We've made those available prior to publication with lots of annotation files for your favorite genome build
GitHub links are at our website: www.mghlab.org/software
GitHub links are at our website: www.mghlab.org/software
Reposted
TEsmall has also been out for a while: www.frontiersin.org/journals/gen...
TEsmall lets you look at all the different types of small RNAs in your data: microRNAs as well as the wild world of other small RNA products including tRNA fragments, piRNAs, and TE-derived siRNAs - with nice QC graphs
TEsmall lets you look at all the different types of small RNAs in your data: microRNAs as well as the wild world of other small RNA products including tRNA fragments, piRNAs, and TE-derived siRNAs - with nice QC graphs
Frontiers | TEsmall Identifies Small RNAs Associated With Targeted Inhibitor Resistance in Melanoma
MicroRNAs (miRNAs) are small 21–22 nt RNAs that act to regulate the expression of mRNA target genes through direct binding to mRNA targets. While miRNAs typi...
www.frontiersin.org
November 18, 2024 at 11:39 PM
TEsmall has also been out for a while: www.frontiersin.org/journals/gen...
TEsmall lets you look at all the different types of small RNAs in your data: microRNAs as well as the wild world of other small RNA products including tRNA fragments, piRNAs, and TE-derived siRNAs - with nice QC graphs
TEsmall lets you look at all the different types of small RNAs in your data: microRNAs as well as the wild world of other small RNA products including tRNA fragments, piRNAs, and TE-derived siRNAs - with nice QC graphs
Reposted
TEtranscripts was published a while ago: academic.oup.com/bioinformati...
TEtranscripts is a great all-purpose gene and TE RNA expression package that produces joint gene & TE count tables. Working with genes & TEs simultaneously helps distinguish real TE expression from overlapping gene reads
TEtranscripts is a great all-purpose gene and TE RNA expression package that produces joint gene & TE count tables. Working with genes & TEs simultaneously helps distinguish real TE expression from overlapping gene reads
TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets
Abstract. Motivation: Most RNA-seq data analysis software packages are not designed to handle the complexities involved in properly apportioning short sequ
academic.oup.com
November 18, 2024 at 11:34 PM
TEtranscripts was published a while ago: academic.oup.com/bioinformati...
TEtranscripts is a great all-purpose gene and TE RNA expression package that produces joint gene & TE count tables. Working with genes & TEs simultaneously helps distinguish real TE expression from overlapping gene reads
TEtranscripts is a great all-purpose gene and TE RNA expression package that produces joint gene & TE count tables. Working with genes & TEs simultaneously helps distinguish real TE expression from overlapping gene reads