Jeffrey Grethe
@syneurgy.bsky.social
UC San Diego, FAIR Data Science, Neuroinformatics
Reposted by Jeffrey Grethe
Data reuse represents an opportunity to accelerate science, reduce costs and increase the value of investments. But to date, the field hasn't placed equal emphasis on the reuse side of the data-sharing equation, writes @bendichter.com
#neuroskyence
www.thetransmitter.org/open-neurosc...
#neuroskyence
www.thetransmitter.org/open-neurosc...
Data reuse represents an opportunity to accelerate the pace of science, reduce costs and increase the value of our collective research investments.
Data reuse represents an opportunity to accelerate the pace of science, reduce costs and increase the value of our collective research investments. New tools that make open data easier to use—and new…
www.thetransmitter.org
July 7, 2025 at 1:47 PM
Data reuse represents an opportunity to accelerate science, reduce costs and increase the value of investments. But to date, the field hasn't placed equal emphasis on the reuse side of the data-sharing equation, writes @bendichter.com
#neuroskyence
www.thetransmitter.org/open-neurosc...
#neuroskyence
www.thetransmitter.org/open-neurosc...
Reposted by Jeffrey Grethe
Join #dkNET Webinar on Apr. 25
🧠 Endothelial Cell Fates in Diabetic Kidney Disease–Lessons from #Kidney #PrecisionMedicine Project @KPMProject
🎙️ Dr. Ricardo Melo Ferreira
🧬 Learn how gene/protein/metabolite data from KPMP can power your research!
🔗 dknet.org/about/blog/2...
🧠 Endothelial Cell Fates in Diabetic Kidney Disease–Lessons from #Kidney #PrecisionMedicine Project @KPMProject
🎙️ Dr. Ricardo Melo Ferreira
🧬 Learn how gene/protein/metabolite data from KPMP can power your research!
🔗 dknet.org/about/blog/2...
April 19, 2025 at 1:49 AM
Join #dkNET Webinar on Apr. 25
🧠 Endothelial Cell Fates in Diabetic Kidney Disease–Lessons from #Kidney #PrecisionMedicine Project @KPMProject
🎙️ Dr. Ricardo Melo Ferreira
🧬 Learn how gene/protein/metabolite data from KPMP can power your research!
🔗 dknet.org/about/blog/2...
🧠 Endothelial Cell Fates in Diabetic Kidney Disease–Lessons from #Kidney #PrecisionMedicine Project @KPMProject
🎙️ Dr. Ricardo Melo Ferreira
🧬 Learn how gene/protein/metabolite data from KPMP can power your research!
🔗 dknet.org/about/blog/2...
Reposted by Jeffrey Grethe
INCF has been accepted as a mentoring organization in #GSoC for the 15th time!
Learn more:
GSoC discussions on Neurostars: neurostars.org/c/gsoc/5
Project ideas list, timeline, etc: bit.ly/INCFGSoC2025
#GSoC2025 #neuroscience #neuroinformagical
Learn more:
GSoC discussions on Neurostars: neurostars.org/c/gsoc/5
Project ideas list, timeline, etc: bit.ly/INCFGSoC2025
#GSoC2025 #neuroscience #neuroinformagical
GSoC
This is the workspace for the INCF Google Summer of Code ( GSoC ) as well as Google Season of Docs projects.
neurostars.org
March 3, 2025 at 12:06 PM
INCF has been accepted as a mentoring organization in #GSoC for the 15th time!
Learn more:
GSoC discussions on Neurostars: neurostars.org/c/gsoc/5
Project ideas list, timeline, etc: bit.ly/INCFGSoC2025
#GSoC2025 #neuroscience #neuroinformagical
Learn more:
GSoC discussions on Neurostars: neurostars.org/c/gsoc/5
Project ideas list, timeline, etc: bit.ly/INCFGSoC2025
#GSoC2025 #neuroscience #neuroinformagical
Reposted by Jeffrey Grethe
⚠️ Effective Monday 2/10/25, NIH indirect rate capped at 15%. Applies to existing & future grants.
—> Deep budget cuts & program closures coming to a university near you.
Is this the break the glass moment for university administrators who have been silent so far about the attack on science?
—> Deep budget cuts & program closures coming to a university near you.
Is this the break the glass moment for university administrators who have been silent so far about the attack on science?
NOT-OD-25-068: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates
NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NOT-OD-25-068. OD
grants.nih.gov
February 7, 2025 at 11:33 PM
⚠️ Effective Monday 2/10/25, NIH indirect rate capped at 15%. Applies to existing & future grants.
—> Deep budget cuts & program closures coming to a university near you.
Is this the break the glass moment for university administrators who have been silent so far about the attack on science?
—> Deep budget cuts & program closures coming to a university near you.
Is this the break the glass moment for university administrators who have been silent so far about the attack on science?
Reposted by Jeffrey Grethe
Wondering what INCF is up to in 2025? We have lots of activities planned for this calendar year - here is a list of events we will host or attend in 2025: bit.ly/42uUnRn
See you there!
See you there!
February 6, 2025 at 2:04 PM
Wondering what INCF is up to in 2025? We have lots of activities planned for this calendar year - here is a list of events we will host or attend in 2025: bit.ly/42uUnRn
See you there!
See you there!
Reposted by Jeffrey Grethe
The ultimate goal of #FAIR is to optimize data reuse. To achieve this, (meta)data should be well-described so they can be replicated &/or combined in different settings.
Read more: bit.ly/WhatIsFAIR
Learn about the FAIR roadmap project: bit.ly/FAIRRoadmapINCF
#FAIRdata
Read more: bit.ly/WhatIsFAIR
Learn about the FAIR roadmap project: bit.ly/FAIRRoadmapINCF
#FAIRdata
February 3, 2025 at 7:19 AM
The ultimate goal of #FAIR is to optimize data reuse. To achieve this, (meta)data should be well-described so they can be replicated &/or combined in different settings.
Read more: bit.ly/WhatIsFAIR
Learn about the FAIR roadmap project: bit.ly/FAIRRoadmapINCF
#FAIRdata
Read more: bit.ly/WhatIsFAIR
Learn about the FAIR roadmap project: bit.ly/FAIRRoadmapINCF
#FAIRdata
Reposted by Jeffrey Grethe
OpenScholar: The open-source A.I. that’s outperforming GPT-4o in scientific research | VentureBeat https://venturebeat.com/ai/openscholar-the-open-source-a-i-thats-outperforming-gpt-4o-in-scientific-research/
OpenScholar: The open-source A.I. that’s outperforming GPT-4o in scientific research
OpenScholar, an innovative AI system by Allen Institute for AI and University of Washington, revolutionizes scientific research by processing 45 million papers instantly, offering researchers citation-backed answers and challenging proprietary AI systems.
venturebeat.com
January 8, 2025 at 3:48 PM
OpenScholar: The open-source A.I. that’s outperforming GPT-4o in scientific research | VentureBeat https://venturebeat.com/ai/openscholar-the-open-source-a-i-thats-outperforming-gpt-4o-in-scientific-research/
Reposted by Jeffrey Grethe
"A study of federally funded research projects in the United States estimated that principal investigators spend on average about 45% of their time on administrative activities related to applying for and managing projects rather than conducting active research"
www.pnas.org/doi/10.1073/...
www.pnas.org/doi/10.1073/...
January 4, 2025 at 1:26 PM
"A study of federally funded research projects in the United States estimated that principal investigators spend on average about 45% of their time on administrative activities related to applying for and managing projects rather than conducting active research"
www.pnas.org/doi/10.1073/...
www.pnas.org/doi/10.1073/...
Reposted by Jeffrey Grethe
"The most significant change from the previous policy is the removal of the 12-month embargo period before manuscripts resulting from NIH funding must be made publicly available." Beautiful. No longer allowing journal profits to hold back science. www.nih.gov/about-nih/wh...
NIH issues new policy to speed access to agency-funded research results
The 12-month embargo period before manuscripts resulting from NIH funding must be made publicly available is removed.
www.nih.gov
December 17, 2024 at 7:37 PM
"The most significant change from the previous policy is the removal of the 12-month embargo period before manuscripts resulting from NIH funding must be made publicly available." Beautiful. No longer allowing journal profits to hold back science. www.nih.gov/about-nih/wh...
Reposted by Jeffrey Grethe
Regularly tempted to write in my NIH grants innovation section: "Funding software that already exists and works well would be highly innovative for the NIH."
(I bet half the panel would break down ROFL, but I'm also highly skeptical that I'd get a good score, or that the PO would be amused.)
(I bet half the panel would break down ROFL, but I'm also highly skeptical that I'd get a good score, or that the PO would be amused.)
December 16, 2024 at 8:13 PM
Regularly tempted to write in my NIH grants innovation section: "Funding software that already exists and works well would be highly innovative for the NIH."
(I bet half the panel would break down ROFL, but I'm also highly skeptical that I'd get a good score, or that the PO would be amused.)
(I bet half the panel would break down ROFL, but I'm also highly skeptical that I'd get a good score, or that the PO would be amused.)
Reposted by Jeffrey Grethe
Biological Database Mining for LLM-Driven Alzheimer's Disease Drug Repurposing https://www.biorxiv.org/content/10.1101/2024.12.04.626255v1
December 9, 2024 at 5:15 AM
Biological Database Mining for LLM-Driven Alzheimer's Disease Drug Repurposing https://www.biorxiv.org/content/10.1101/2024.12.04.626255v1
Reposted by Jeffrey Grethe
I think there is a way to do exploratory research very rigorously. Just use full transparency. Publish the entire github history for the analysis chain, nits, zits, and all. And of course, focus more on the strength of evidence than posthoc narrative building.
I really enjoyed reading this world view in Nature about the importance of exploratory research in the social sciences by @balazsaczel.bsky.social and am wondering what people think. Do you generally agree with his point? 🧪@natureportfolio.bsky.social www.nature.com/articles/d41...
Let the data talk: embrace exploratory research
Open-ended research is essential to building solid hypotheses in the social sciences — without it, even the best-planned analyses can fail.
www.nature.com
November 29, 2024 at 8:39 AM
I think there is a way to do exploratory research very rigorously. Just use full transparency. Publish the entire github history for the analysis chain, nits, zits, and all. And of course, focus more on the strength of evidence than posthoc narrative building.
Reposted by Jeffrey Grethe
