Sebi
@sebi06.bsky.social
I am a Software Architect for AI Solutions, Python Fan, Microscopist Image Analyst and really like Skiing.
Science is like magic but real.
Science is like magic but real.
Reposted by Sebi
I really hate it when scientists keep saying that “we need to rebuild trust in science,” because it implies that scientists are to blame for the mistrust rather than the millions of dollars of dark money that have funded political attacks on science in order to advance a far right agenda.
November 19, 2025 at 9:48 PM
I really hate it when scientists keep saying that “we need to rebuild trust in science,” because it implies that scientists are to blame for the mistrust rather than the millions of dollars of dark money that have funded political attacks on science in order to advance a far right agenda.
I am still digesting all the info from the OME-NGFF hackathon last week.
So I decided to make a little UI for some of the code created there (just to play around), which one can easily show to interested colleagues 😜.
CZI --> OME-ZARR with some options ...
By far not perfect but still fun!
So I decided to make a little UI for some of the code created there (just to play around), which one can easily show to interested colleagues 😜.
CZI --> OME-ZARR with some options ...
By far not perfect but still fun!
November 19, 2025 at 5:06 PM
I am still digesting all the info from the OME-NGFF hackathon last week.
So I decided to make a little UI for some of the code created there (just to play around), which one can easily show to interested colleagues 😜.
CZI --> OME-ZARR with some options ...
By far not perfect but still fun!
So I decided to make a little UI for some of the code created there (just to play around), which one can easily show to interested colleagues 😜.
CZI --> OME-ZARR with some options ...
By far not perfect but still fun!
Reposted by Sebi
ZEISS Lightfield 4D has been nominated for the prestigious Thuringian Innovation Award! 🎉The jury has made their selections - now it's your turn to decide on the "Audience Award 2025". 👉 Support us with a "thumbs up" : zeiss.ly/innovationspreis2025-voting
Voting is open until Nov 21, 2025. ⌛
Voting is open until Nov 21, 2025. ⌛
November 19, 2025 at 9:58 AM
ZEISS Lightfield 4D has been nominated for the prestigious Thuringian Innovation Award! 🎉The jury has made their selections - now it's your turn to decide on the "Audience Award 2025". 👉 Support us with a "thumbs up" : zeiss.ly/innovationspreis2025-voting
Voting is open until Nov 21, 2025. ⌛
Voting is open until Nov 21, 2025. ⌛
Hi Fans of Feedback Microscopy,
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
November 7, 2025 at 7:23 PM
Hi Fans of Feedback Microscopy,
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
Reposted by Sebi
My favorite thingy: Direct data streaming and stage control from Java!
October 17, 2025 at 3:04 PM
My favorite thingy: Direct data streaming and stage control from Java!
nice to see our ZEN API from @zeiss-microscopy.bsky.social in action. *.proto Files --> Java --> Pixel Stream in Fiji 😉
If you want more info check
github.com/zeiss-micros...
github.com/sebi06/ZEN_P...
If you want more info check
github.com/zeiss-micros...
github.com/sebi06/ZEN_P...
October 17, 2025 at 7:10 PM
nice to see our ZEN API from @zeiss-microscopy.bsky.social in action. *.proto Files --> Java --> Pixel Stream in Fiji 😉
If you want more info check
github.com/zeiss-micros...
github.com/sebi06/ZEN_P...
If you want more info check
github.com/zeiss-micros...
github.com/sebi06/ZEN_P...
Reposted by Sebi
That’s Mifobio Spirit @gdrimabio.bsky.social … fun sample thanks Frédéric Bolze
October 14, 2025 at 9:50 AM
That’s Mifobio Spirit @gdrimabio.bsky.social … fun sample thanks Frédéric Bolze
Getting ready for the Smart Microscopy Workshop at the EPFL in Lausanne. Cannot wait to get started ... 😀
www.zeiss.ch/mikroskopie/...
The code for the ZEN API & Python related topics can be found here:
github.com/sebi06/ZEN_P...
www.zeiss.ch/mikroskopie/...
The code for the ZEN API & Python related topics can be found here:
github.com/sebi06/ZEN_P...
GitHub - sebi06/ZEN_Python_CZI_Smart_Microscopy_Workshop: Material to showcase and test several tools and packages releated to ZEN, OAD, ZEN-API. CZI image files and python packages related to those t...
Material to showcase and test several tools and packages releated to ZEN, OAD, ZEN-API. CZI image files and python packages related to those topics - sebi06/ZEN_Python_CZI_Smart_Microscopy_Workshop
github.com
October 13, 2025 at 7:24 PM
Getting ready for the Smart Microscopy Workshop at the EPFL in Lausanne. Cannot wait to get started ... 😀
www.zeiss.ch/mikroskopie/...
The code for the ZEN API & Python related topics can be found here:
github.com/sebi06/ZEN_P...
www.zeiss.ch/mikroskopie/...
The code for the ZEN API & Python related topics can be found here:
github.com/sebi06/ZEN_P...
Bald könnten ALLE Chat-Nachrichten von den Behörden durchsucht werden – selbst ohne Verdacht! Das entscheiden *heute* die Minister*innen. Sag Nein zur Chatkontrolle! Jetzt unterzeichnen ✍️ weact.campact.de/petitions/ch...
Chatkontrolle stoppen!
Die EU-Kommission will Messenger-Dienste wie WhatsApp und Signal zwingen, alle privaten Nachrichten und Fotos in Echtzeit zu scannen. Angeblich zum Kinderschutz. In Wahrheit bedeutet die Chatkontrolle...
weact.campact.de
October 7, 2025 at 9:04 PM
Bald könnten ALLE Chat-Nachrichten von den Behörden durchsucht werden – selbst ohne Verdacht! Das entscheiden *heute* die Minister*innen. Sag Nein zur Chatkontrolle! Jetzt unterzeichnen ✍️ weact.campact.de/petitions/ch...
Guess what i am just doing ...?
October 1, 2025 at 12:39 PM
Guess what i am just doing ...?
Reposted by Sebi
Americans: tell your friends who are worried about Tylenol that there's a safe alternative available in the UK.
For a modest fee, I will send them Paracetamol, which is NHS-approved for pregnancy and for children.
You can even get it combined with decongestant to make a tasty hot lemon drink.
For a modest fee, I will send them Paracetamol, which is NHS-approved for pregnancy and for children.
You can even get it combined with decongestant to make a tasty hot lemon drink.
September 27, 2025 at 9:07 AM
Americans: tell your friends who are worried about Tylenol that there's a safe alternative available in the UK.
For a modest fee, I will send them Paracetamol, which is NHS-approved for pregnancy and for children.
You can even get it combined with decongestant to make a tasty hot lemon drink.
For a modest fee, I will send them Paracetamol, which is NHS-approved for pregnancy and for children.
You can even get it combined with decongestant to make a tasty hot lemon drink.
Hi Fans of Smart Microscopy,
Are you ready to automate your next large scale microscopy experiment and work smarter, not harder?
Join us for the Smart Microscopy workshop organized by EPFL Bio-Imaging Platform (Lausanne) and @zeiss-microscopy.bsky.social
www.zeiss.ch/mikroskopie/...
Are you ready to automate your next large scale microscopy experiment and work smarter, not harder?
Join us for the Smart Microscopy workshop organized by EPFL Bio-Imaging Platform (Lausanne) and @zeiss-microscopy.bsky.social
www.zeiss.ch/mikroskopie/...
September 26, 2025 at 7:47 AM
Hi Fans of Smart Microscopy,
Are you ready to automate your next large scale microscopy experiment and work smarter, not harder?
Join us for the Smart Microscopy workshop organized by EPFL Bio-Imaging Platform (Lausanne) and @zeiss-microscopy.bsky.social
www.zeiss.ch/mikroskopie/...
Are you ready to automate your next large scale microscopy experiment and work smarter, not harder?
Join us for the Smart Microscopy workshop organized by EPFL Bio-Imaging Platform (Lausanne) and @zeiss-microscopy.bsky.social
www.zeiss.ch/mikroskopie/...
I saw this in my vaccation in a cafe in France.
As a person creating AI software tools I hope that is not true but I am not so sure anymore ...
As a person creating AI software tools I hope that is not true but I am not so sure anymore ...
September 16, 2025 at 6:03 AM
I saw this in my vaccation in a cafe in France.
As a person creating AI software tools I hope that is not true but I am not so sure anymore ...
As a person creating AI software tools I hope that is not true but I am not so sure anymore ...
Reposted by Sebi
From #ome-ngff-validator you can open open #OME-Zarr images in a bunch of viewers, and neuroglancer's rendering of multi-channel images just got a lot nicer: ome.github.io/ome-ngff-val... - See github.com/google/neuro...
September 8, 2025 at 8:24 AM
From #ome-ngff-validator you can open open #OME-Zarr images in a bunch of viewers, and neuroglancer's rendering of multi-channel images just got a lot nicer: ome.github.io/ome-ngff-val... - See github.com/google/neuro...
Reposted by Sebi
Finally! 🤩 Our position piece: Against the Uncritical Adoption of 'AI' Technologies in Academia:
doi.org/10.5281/zeno...
We unpick the tech industry’s marketing, hype, & harm; and we argue for safeguarding higher education, critical
thinking, expertise, academic freedom, & scientific integrity.
1/n
doi.org/10.5281/zeno...
We unpick the tech industry’s marketing, hype, & harm; and we argue for safeguarding higher education, critical
thinking, expertise, academic freedom, & scientific integrity.
1/n
September 6, 2025 at 8:13 AM
Finally! 🤩 Our position piece: Against the Uncritical Adoption of 'AI' Technologies in Academia:
doi.org/10.5281/zeno...
We unpick the tech industry’s marketing, hype, & harm; and we argue for safeguarding higher education, critical
thinking, expertise, academic freedom, & scientific integrity.
1/n
doi.org/10.5281/zeno...
We unpick the tech industry’s marketing, hype, & harm; and we argue for safeguarding higher education, critical
thinking, expertise, academic freedom, & scientific integrity.
1/n
Reposted by Sebi
We’re excited to share that ez_zarr now supports Zarr v3! 🚀 Huge thanks to @mbstadler.bsky.social & @csoneson.bsky.social who took on the challenge of creating this open-source tool for fast, programmatic access to OME-Zarr file sets + easy plotting 📊
📄 joss.theoj.org/papers/10.2110… (1/3)
📄 joss.theoj.org/papers/10.2110… (1/3)
ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets
Barbiero et al., (2025). ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets. Journal of Open Source Software, 10(109), 7882, https://doi.org/10.21105/joss.07882
joss.theoj.org
August 15, 2025 at 1:07 PM
We’re excited to share that ez_zarr now supports Zarr v3! 🚀 Huge thanks to @mbstadler.bsky.social & @csoneson.bsky.social who took on the challenge of creating this open-source tool for fast, programmatic access to OME-Zarr file sets + easy plotting 📊
📄 joss.theoj.org/papers/10.2110… (1/3)
📄 joss.theoj.org/papers/10.2110… (1/3)
Reposted by Sebi
#HVO100 und "Bio"-Diesel aus Altspeiseöl ist klimaschädlicher als fossiler Diesel – das ergibt unsere neue Studie. Besonders relevant sind dabei Klimaschäden durch Verlagerungseffekte in der Palmölproduktion. www.duh.de/presse/press...
Deutsche Umwelthilfe belegt: HVO100 aus Altspeiseöl klimaschädlicher als fossiler Diesel
• Neue Studie im Auftrag der DUH: HVO100 und „Bio“-Diesel aus Altspeiseöl in der Gesamtbetrachtung von der Produktion bis zum Verbrauch noch klimaschädlicher als fossiler Diesel• Versprechen von fast ...
www.duh.de
August 22, 2025 at 9:27 AM
#HVO100 und "Bio"-Diesel aus Altspeiseöl ist klimaschädlicher als fossiler Diesel – das ergibt unsere neue Studie. Besonders relevant sind dabei Klimaschäden durch Verlagerungseffekte in der Palmölproduktion. www.duh.de/presse/press...
I finally managed to upload the first version of the napari-czitools plugin (still in alpha - expect issues...)
- open complete CZI images or subsets
- read CZI metadata
pypi.org/project/napa...
or
github.com/sebi06/napar...
- open complete CZI images or subsets
- read CZI metadata
pypi.org/project/napa...
or
github.com/sebi06/napar...
August 20, 2025 at 6:23 PM
I finally managed to upload the first version of the napari-czitools plugin (still in alpha - expect issues...)
- open complete CZI images or subsets
- read CZI metadata
pypi.org/project/napa...
or
github.com/sebi06/napar...
- open complete CZI images or subsets
- read CZI metadata
pypi.org/project/napa...
or
github.com/sebi06/napar...
Reposted by Sebi
I don't want it near me and I'm in an AI department FWIW. openletter.earth/open-letter-...
Open Letter: Stop the Uncritical Adoption of AI Technologies in Academia
openletter.earth
August 1, 2025 at 7:03 AM
I don't want it near me and I'm in an AI department FWIW. openletter.earth/open-letter-...
Reposted by Sebi
Important letter making an analogy between AI companies and tobacco & petroleum industries.
I don't want it near me and I'm in an AI department FWIW. openletter.earth/open-letter-...
Open Letter: Stop the Uncritical Adoption of AI Technologies in Academia
openletter.earth
August 2, 2025 at 1:05 PM
Important letter making an analogy between AI companies and tobacco & petroleum industries.
The 1st working version of my little @napari.org plugin (napari-czitools) is almost ready.
It contains sample data, allows to read CZI metadata and can read CZI images (or parts of it) by using the sliders to crop what should be read.
Still quite some things to improve ...
It contains sample data, allows to read CZI metadata and can read CZI images (or parts of it) by using the sliders to crop what should be read.
Still quite some things to improve ...
July 30, 2025 at 7:50 PM
The 1st working version of my little @napari.org plugin (napari-czitools) is almost ready.
It contains sample data, allows to read CZI metadata and can read CZI images (or parts of it) by using the sliders to crop what should be read.
Still quite some things to improve ...
It contains sample data, allows to read CZI metadata and can read CZI images (or parts of it) by using the sliders to crop what should be read.
Still quite some things to improve ...
Reposted by Sebi
Segment any MRI, CTscan, histology, transcriptomic image using CODA using Prof. Kiemen's CODAvision.
CODAvision enhances the usability of the CODA algorithm to automatically generating quantitative results and comprehensive reports.
More here: www.biorxiv.org/content/10.1...
CODAvision enhances the usability of the CODA algorithm to automatically generating quantitative results and comprehensive reports.
More here: www.biorxiv.org/content/10.1...
June 7, 2025 at 4:46 PM
Segment any MRI, CTscan, histology, transcriptomic image using CODA using Prof. Kiemen's CODAvision.
CODAvision enhances the usability of the CODA algorithm to automatically generating quantitative results and comprehensive reports.
More here: www.biorxiv.org/content/10.1...
CODAvision enhances the usability of the CODA algorithm to automatically generating quantitative results and comprehensive reports.
More here: www.biorxiv.org/content/10.1...
Reposted by Sebi
Amazing 👇
Just stumbled upon a German tongue-twister song by Bodo Wartke… about the sexiest cell organelle. Yes, endoplasmic reticulum - your moment has come.
youtube.com/shorts/EP5pd...
youtube.com/shorts/EP5pd...
Das endoplasmatische Retikulum
YouTube video by Bodo Wartke
youtube.com
June 8, 2025 at 6:06 AM
Amazing 👇