Sanja Zenker
@sanjaze.bsky.social
PhD student at Bielefeld University, interested in regulation, photosynthesis and computational biology 🌱🧬 she/her
Reposted by Sanja Zenker
Happy to share a new paper by the Computational Biology group from Bielefeld University and myself!🌾🧪🧬🖥
#PlantScience
academic.oup.com/biomethods/a...
#PlantScience
academic.oup.com/biomethods/a...
Optimized DNA affinity purification sequencing determines relative binding affinity of transcription factors
Abstract. DAP-seq is an in vitro method to analyze the relative binding affinity of transcription factors to DNA. It is a fast and scalable method and its
academic.oup.com
November 21, 2025 at 7:46 PM
Happy to share a new paper by the Computational Biology group from Bielefeld University and myself!🌾🧪🧬🖥
#PlantScience
academic.oup.com/biomethods/a...
#PlantScience
academic.oup.com/biomethods/a...
Reposted by Sanja Zenker
Now online in its final version. Plz surf to doi.org/10.1111/tpj....
November 12, 2025 at 9:29 PM
Now online in its final version. Plz surf to doi.org/10.1111/tpj....
Reposted by Sanja Zenker
Hi all @plantsciencedbg.bsky.social members and other 🌽community folks, #MBP2026 🌱 is no open for registration. Please 🏄♀️ to: www.pflanzen-molekularbiologie.de/en/conferenc...
Conference
Conference "Molecular Biology of Plants", annual meeting of the Section Plant Physiology and Molecular Biology in the DBG
www.pflanzen-molekularbiologie.de
October 28, 2025 at 10:19 AM
Hi all @plantsciencedbg.bsky.social members and other 🌽community folks, #MBP2026 🌱 is no open for registration. Please 🏄♀️ to: www.pflanzen-molekularbiologie.de/en/conferenc...
Reposted by Sanja Zenker
Time- and space-resolved regulatory circuits in Arabidopsis thaliana https://www.biorxiv.org/content/10.1101/2025.10.23.684094v1
October 24, 2025 at 8:03 PM
Time- and space-resolved regulatory circuits in Arabidopsis thaliana https://www.biorxiv.org/content/10.1101/2025.10.23.684094v1
Reposted by Sanja Zenker
How conserved are plant transcription factor binding sites?
academic.oup.com/plphys/artic...
Great study by @andreabraeutigam.bsky.social lab shows a mixed pattern. Thanks for making good use of #TAPscan onlinelibrary.wiley.com/doi/10.1111/... also. C2H2 neofunctionalization fits ny thoughts.
academic.oup.com/plphys/artic...
Great study by @andreabraeutigam.bsky.social lab shows a mixed pattern. Thanks for making good use of #TAPscan onlinelibrary.wiley.com/doi/10.1111/... also. C2H2 neofunctionalization fits ny thoughts.
academic.oup.com
August 10, 2025 at 5:24 PM
How conserved are plant transcription factor binding sites?
academic.oup.com/plphys/artic...
Great study by @andreabraeutigam.bsky.social lab shows a mixed pattern. Thanks for making good use of #TAPscan onlinelibrary.wiley.com/doi/10.1111/... also. C2H2 neofunctionalization fits ny thoughts.
academic.oup.com/plphys/artic...
Great study by @andreabraeutigam.bsky.social lab shows a mixed pattern. Thanks for making good use of #TAPscan onlinelibrary.wiley.com/doi/10.1111/... also. C2H2 neofunctionalization fits ny thoughts.
Reposted by Sanja Zenker
Many transcription factor families have evolutionarily conserved binding motifs in plants (Sanja Zenker , Donat Wulf , Anja Meierhenrich , Prisca Viehöver , Sarah Becker , Marion Eisenhut , Ralf Stracke , Bernd Weisshaar , Andrea Bräutigam) doi.org/10.1093/plph... #PlantScience
July 22, 2025 at 7:39 PM
Many transcription factor families have evolutionarily conserved binding motifs in plants (Sanja Zenker , Donat Wulf , Anja Meierhenrich , Prisca Viehöver , Sarah Becker , Marion Eisenhut , Ralf Stracke , Bernd Weisshaar , Andrea Bräutigam) doi.org/10.1093/plph... #PlantScience
Reposted by Sanja Zenker
Regulation of Crassulacean acid metabolism at the protein level in Kalanchoë laxiflora (Katharina Schiller , Saskia Janshoff , Sanja Zenker , Prisca Viehöver , James Hartwell , Jürgen Eirich , Iris Finkemeier , Andrea Bräutigam) doi.org/10.1093/plph... #PlantScience
doi.org
May 13, 2025 at 5:58 PM
Regulation of Crassulacean acid metabolism at the protein level in Kalanchoë laxiflora (Katharina Schiller , Saskia Janshoff , Sanja Zenker , Prisca Viehöver , James Hartwell , Jürgen Eirich , Iris Finkemeier , Andrea Bräutigam) doi.org/10.1093/plph... #PlantScience
Reposted by Sanja Zenker
TAPscan v4, final verson available:
dx.doi.org/10.1111/tpj....
Annotate TF families yourself or access web-UI online. Thanks to @petrollromy.bsky.social @shiltemann.bsky.social @jandevries.bsky.social @watertoland.bsky.social
dx.doi.org/10.1111/tpj....
Annotate TF families yourself or access web-UI online. Thanks to @petrollromy.bsky.social @shiltemann.bsky.social @jandevries.bsky.social @watertoland.bsky.social
TAPscan v4: Annotation of 138 TF/TR families across 678 species, focus on plants. Of 18 new (sub)fmilies, nine were gained in the most recent common ancestor of the Streptophyta (comprising streptophyte algae and land plants), or within streptophyte algae. 1/2
onlinelibrary.wiley.com/doi/full/10....
onlinelibrary.wiley.com/doi/full/10....
January 14, 2025 at 8:11 PM
TAPscan v4, final verson available:
dx.doi.org/10.1111/tpj....
Annotate TF families yourself or access web-UI online. Thanks to @petrollromy.bsky.social @shiltemann.bsky.social @jandevries.bsky.social @watertoland.bsky.social
dx.doi.org/10.1111/tpj....
Annotate TF families yourself or access web-UI online. Thanks to @petrollromy.bsky.social @shiltemann.bsky.social @jandevries.bsky.social @watertoland.bsky.social
Reposted by Sanja Zenker
📢Job alert! #joboffer #plantscijobs
Are you interested in plant gene regulation and synthetic biology? I have two open #postdoc positions in my #EmmyNoether group @hhu.bsky.social. See below for more information (or visit www.synthetic-biology.hhu.de/available-po...).
Please share!
Are you interested in plant gene regulation and synthetic biology? I have two open #postdoc positions in my #EmmyNoether group @hhu.bsky.social. See below for more information (or visit www.synthetic-biology.hhu.de/available-po...).
Please share!
January 8, 2025 at 3:30 PM
📢Job alert! #joboffer #plantscijobs
Are you interested in plant gene regulation and synthetic biology? I have two open #postdoc positions in my #EmmyNoether group @hhu.bsky.social. See below for more information (or visit www.synthetic-biology.hhu.de/available-po...).
Please share!
Are you interested in plant gene regulation and synthetic biology? I have two open #postdoc positions in my #EmmyNoether group @hhu.bsky.social. See below for more information (or visit www.synthetic-biology.hhu.de/available-po...).
Please share!
Reposted by Sanja Zenker
Many transcription factor families have evolutionarily conserved binding motifs in plants https://www.biorxiv.org/content/10.1101/2024.10.31.621407v1
Many transcription factor families have evolutionarily conserved binding motifs in plants https://www.biorxiv.org/content/10.1101/2024.10.31.621407v1
Transcription factors control gene expression during development and in response to a broad range of
www.biorxiv.org
November 3, 2024 at 7:02 PM
Many transcription factor families have evolutionarily conserved binding motifs in plants https://www.biorxiv.org/content/10.1101/2024.10.31.621407v1
Reposted by Sanja Zenker
📜 Many transcription factor families have evolutionarily conserved binding motifs in plants
🧑🔬 @sanjaze.bsky.social, @andreabraeutigam.bsky.social, et al.
📔 @biorxiv-plants.bsky.social
🔗 www.biorxiv.org/content/10.1...
#️⃣ #PlantScience #PlantEvoDevo #PlantGenetics #PlantGenomics #PlantEvolution
🧑🔬 @sanjaze.bsky.social, @andreabraeutigam.bsky.social, et al.
📔 @biorxiv-plants.bsky.social
🔗 www.biorxiv.org/content/10.1...
#️⃣ #PlantScience #PlantEvoDevo #PlantGenetics #PlantGenomics #PlantEvolution
Many transcription factor families have evolutionarily conserved binding motifs in plants
Transcription factors control gene expression during development and in response to a broad range of internal and external stimuli. They regulate promoter activity by directly binding cis-regulatory e...
www.biorxiv.org
November 5, 2024 at 8:05 AM
📜 Many transcription factor families have evolutionarily conserved binding motifs in plants
🧑🔬 @sanjaze.bsky.social, @andreabraeutigam.bsky.social, et al.
📔 @biorxiv-plants.bsky.social
🔗 www.biorxiv.org/content/10.1...
#️⃣ #PlantScience #PlantEvoDevo #PlantGenetics #PlantGenomics #PlantEvolution
🧑🔬 @sanjaze.bsky.social, @andreabraeutigam.bsky.social, et al.
📔 @biorxiv-plants.bsky.social
🔗 www.biorxiv.org/content/10.1...
#️⃣ #PlantScience #PlantEvoDevo #PlantGenetics #PlantGenomics #PlantEvolution
Reposted by Sanja Zenker
I'd be grateful for some critique - the reviewers were not kind exactly.
"Transcription factors operate on a limited vocabulary of binding motifs in Arabidopsis thaliana"
New #preprint from Sanja Zenker & Andrea Bräutigam et al. on the role of transcription factor binding sites as signal integrators.
www.biorxiv.org/content/10.1...
#PlantScience #GeneRegulation
New #preprint from Sanja Zenker & Andrea Bräutigam et al. on the role of transcription factor binding sites as signal integrators.
www.biorxiv.org/content/10.1...
#PlantScience #GeneRegulation
Transcription factors operate on a limited vocabulary of binding motifs in Arabidopsis thaliana
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
October 31, 2023 at 11:05 AM
I'd be grateful for some critique - the reviewers were not kind exactly.