Russell Rockne
@rrockne.bsky.social
A mathematical model translates aggregated single-cell RNA sequencing data into stages of disease. #SystemsBiology
Charis Qi highlights a recent #preprint from David Frankhouse, @rrockne.bsky.social & team
#preLight ⬇️
prelights.biologists.com/highlights/l...
Charis Qi highlights a recent #preprint from David Frankhouse, @rrockne.bsky.social & team
#preLight ⬇️
prelights.biologists.com/highlights/l...
Longitudinal single cell RNA-sequencing reveals evolution of micro- and macro-states in chronic myeloid leukemia - preLights
A mathematical model translates aggregated single-cell RNA sequencing data into stages of disease
prelights.biologists.com
November 4, 2025 at 7:43 PM
Reposted by Russell Rockne
Finally, someone has solved a real problem with AI! No more having to take a paper in the format for a journal that rejected you, and reformat it for a new journal. Well done!! formatmypaper.com
October 15, 2025 at 6:33 AM
Finally, someone has solved a real problem with AI! No more having to take a paper in the format for a journal that rejected you, and reformat it for a new journal. Well done!! formatmypaper.com
A real challenge for science. Some good suggestions here but no silver bullet answer
Journals and funders are trying to boost the speed and effectiveness of review processes that are under strain
go.nature.com/4oACp8A
go.nature.com/4oACp8A
The peer-review crisis: how to fix an overloaded system
Nature - Journals and funders are trying to boost the speed and effectiveness of review processes that are under strain.
go.nature.com
August 17, 2025 at 5:53 PM
A real challenge for science. Some good suggestions here but no silver bullet answer
Reposted by Russell Rockne
A simple design framework that will massively improve your slides and your public speaking
clauswilke.substack.com/p/slides-tha...
clauswilke.substack.com/p/slides-tha...
Slide designs that present themselves: The assertion–evidence template
Your slides are not your talk.
clauswilke.substack.com
August 15, 2025 at 11:10 AM
A simple design framework that will massively improve your slides and your public speaking
clauswilke.substack.com/p/slides-tha...
clauswilke.substack.com/p/slides-tha...
Reposted by Russell Rockne
Quantum mechanics is one of the most successful theories in science — and makes much of modern life possible
go.nature.com/4mjXRg3
go.nature.com/4mjXRg3
Physicists disagree wildly on what quantum mechanics says about reality, Nature survey shows
Nature - First major attempt to chart researchers’ views finds interpretations in conflict.
go.nature.com
August 2, 2025 at 1:36 PM
Quantum mechanics is one of the most successful theories in science — and makes much of modern life possible
go.nature.com/4mjXRg3
go.nature.com/4mjXRg3
Reposted by Russell Rockne
Abstract submission is now open for #MathOnco25! So please go ahead and submit asap to have a chance of getting one of our travel awards: mathematical-oncology.org/mathonco25
Mathematical Oncology Conference - MathOnco25
mathematical-oncology.org
July 31, 2025 at 7:36 PM
Abstract submission is now open for #MathOnco25! So please go ahead and submit asap to have a chance of getting one of our travel awards: mathematical-oncology.org/mathonco25
Reposted by Russell Rockne
A packed opening plenary from one of the @smbmathbiology.bsky.social Canadian giants! Mark Lewis “One equation helps solve three paradoxes in the spatial ecology of predators and prey” Mark also wins the prestigious Akira Okubo Prize!! #SMB2025
July 14, 2025 at 5:14 PM
A packed opening plenary from one of the @smbmathbiology.bsky.social Canadian giants! Mark Lewis “One equation helps solve three paradoxes in the spatial ecology of predators and prey” Mark also wins the prestigious Akira Okubo Prize!! #SMB2025
Reposted by Russell Rockne
Next up is former student & friend @stroblmar.bsky.social presenting new work with @cancerconnector.bsky.social on “Bridging the gap: What preclinical experiments can teach us about cancer drug scheduling” #MathOnco #SMB2025
July 14, 2025 at 5:18 PM
Next up is former student & friend @stroblmar.bsky.social presenting new work with @cancerconnector.bsky.social on “Bridging the gap: What preclinical experiments can teach us about cancer drug scheduling” #MathOnco #SMB2025
Reposted by Russell Rockne
Over a month ago a bunch of #MathOnco and #AIOnco researchers got together in Syracuse to discuss how #AI may and may not change the field. Here are some thoughts in a collective effort led by @rrockne.bsky.social:
The Future of Mathematical Oncology in the Age of AI
mathematical-oncology.org
mathematical-oncology.org
July 10, 2025 at 9:23 PM
Over a month ago a bunch of #MathOnco and #AIOnco researchers got together in Syracuse to discuss how #AI may and may not change the field. Here are some thoughts in a collective effort led by @rrockne.bsky.social:
Reposted by Russell Rockne
Emerging ‘co-scientist’ systems use teams of chatbots to mimic the deliberations of a research group. Do they really help?
https://go.nature.com/4l3Lzbz
https://go.nature.com/4l3Lzbz
What’s it like to work with an AI team of virtual scientists?
Emerging ‘co-scientist’ systems use teams of chatbots to mimic the deliberations of a research group. Do they really help?
go.nature.com
July 2, 2025 at 10:43 AM
Emerging ‘co-scientist’ systems use teams of chatbots to mimic the deliberations of a research group. Do they really help?
https://go.nature.com/4l3Lzbz
https://go.nature.com/4l3Lzbz
Reposted by Russell Rockne
Attending a conference entitled, The Future of Cancer Research: Unleashing the Power of Machine Learning, taking place in the historic city of Syracuse. Organized by @cityofhope.bsky.social @sergiobranciamore.bsky.social, Andrei Rodin, Konstancja Urbaniak and @rrockne.bsky.social
May 26, 2025 at 9:41 AM
Attending a conference entitled, The Future of Cancer Research: Unleashing the Power of Machine Learning, taking place in the historic city of Syracuse. Organized by @cityofhope.bsky.social @sergiobranciamore.bsky.social, Andrei Rodin, Konstancja Urbaniak and @rrockne.bsky.social
Reposted by Russell Rockne
genomebiology.biomedcentral.com/articles/10....
Quite an indictment of some of the current single cell "virtual cell" foundation models. Even for the relatively mundane applications, cell labeling, batch correction etc, they are poor compared to much simpler & cheaper methods.
Quite an indictment of some of the current single cell "virtual cell" foundation models. Even for the relatively mundane applications, cell labeling, batch correction etc, they are poor compared to much simpler & cheaper methods.
Zero-shot evaluation reveals limitations of single-cell foundation models - Genome Biology
Foundation models such as scGPT and Geneformer have not been rigorously evaluated in a setting where they are used without any further training (i.e., zero-shot). Understanding the performance of mode...
genomebiology.biomedcentral.com
April 20, 2025 at 4:14 PM
genomebiology.biomedcentral.com/articles/10....
Quite an indictment of some of the current single cell "virtual cell" foundation models. Even for the relatively mundane applications, cell labeling, batch correction etc, they are poor compared to much simpler & cheaper methods.
Quite an indictment of some of the current single cell "virtual cell" foundation models. Even for the relatively mundane applications, cell labeling, batch correction etc, they are poor compared to much simpler & cheaper methods.
Reposted by Russell Rockne
What is the difference between PINNs, Universal PINNs, Neural Differential Equations (DEs) and Universal DEs?
Don’t miss this blog post that I wrote with a bunch of amazing colleagues from a #MechanisticLearning workshop in Canada
mathematical-oncology.org/blog/learnin...
@ocbe.bsky.social
Don’t miss this blog post that I wrote with a bunch of amazing colleagues from a #MechanisticLearning workshop in Canada
mathematical-oncology.org/blog/learnin...
@ocbe.bsky.social
Learning Dynamics with Neural Networks
mathematical-oncology.org
mathematical-oncology.org
March 21, 2025 at 10:48 PM
What is the difference between PINNs, Universal PINNs, Neural Differential Equations (DEs) and Universal DEs?
Don’t miss this blog post that I wrote with a bunch of amazing colleagues from a #MechanisticLearning workshop in Canada
mathematical-oncology.org/blog/learnin...
@ocbe.bsky.social
Don’t miss this blog post that I wrote with a bunch of amazing colleagues from a #MechanisticLearning workshop in Canada
mathematical-oncology.org/blog/learnin...
@ocbe.bsky.social