Friederike Hanssen
@rikehanssen.bsky.social
Finally got around to release a tiny pipeline together with Susanne Jodoin: github.com/qbic-pipelin...
It takes VEP-annotated VCFs, filters them, and converts them to MAF format. Tested with @nf-co.re /sarek generated VCF files.
It takes VEP-annotated VCFs, filters them, and converts them to MAF format. Tested with @nf-co.re /sarek generated VCF files.
GitHub - qbic-pipelines/vcftomaf
Contribute to qbic-pipelines/vcftomaf development by creating an account on GitHub.
github.com
March 13, 2024 at 12:24 PM
Finally got around to release a tiny pipeline together with Susanne Jodoin: github.com/qbic-pipelin...
It takes VEP-annotated VCFs, filters them, and converts them to MAF format. Tested with @nf-co.re /sarek generated VCF files.
It takes VEP-annotated VCFs, filters them, and converts them to MAF format. Tested with @nf-co.re /sarek generated VCF files.
Reposted by Friederike Hanssen
The nf-core hackathon is back! Join us Mon 18th - Wed 20th March 2024 for 3 days of Nextflow and fun!
In 2023 we supported local sites for the first time. With almost 20 volunteers organizing local sites around the world, they were a massive success.
In 2023 we supported local sites for the first time. With almost 20 volunteers organizing local sites around the world, they were a massive success.
January 16, 2024 at 5:22 PM
The nf-core hackathon is back! Join us Mon 18th - Wed 20th March 2024 for 3 days of Nextflow and fun!
In 2023 we supported local sites for the first time. With almost 20 volunteers organizing local sites around the world, they were a massive success.
In 2023 we supported local sites for the first time. With almost 20 volunteers organizing local sites around the world, they were a massive success.
Reposted by Friederike Hanssen
MultiQC v1.19 was just released - just in time for the holidays! 🎁 🎄
This release has a bunch of bug-fixes, with 9 different modules receiving tweaks and improvements 🛠️ The MultiQC core code also got a bit of sprucing up and spring cleaning 🧽🫧
Enjoy!
github.com/ewels/MultiQ...
This release has a bunch of bug-fixes, with 9 different modules receiving tweaks and improvements 🛠️ The MultiQC core code also got a bit of sprucing up and spring cleaning 🧽🫧
Enjoy!
github.com/ewels/MultiQ...
Release MultiQC version 1.19 · ewels/MultiQC
Highlights
An early Christmas present 🎁 Happy holidays everyone! 🎄
This release is mostly bugfixes and minor additions, whilst we lay the groundwork for some bigger updates coming in the new yea...
github.com
December 18, 2023 at 10:13 AM
MultiQC v1.19 was just released - just in time for the holidays! 🎁 🎄
This release has a bunch of bug-fixes, with 9 different modules receiving tweaks and improvements 🛠️ The MultiQC core code also got a bit of sprucing up and spring cleaning 🧽🫧
Enjoy!
github.com/ewels/MultiQ...
This release has a bunch of bug-fixes, with 9 different modules receiving tweaks and improvements 🛠️ The MultiQC core code also got a bit of sprucing up and spring cleaning 🧽🫧
Enjoy!
github.com/ewels/MultiQ...
A new release is out with a few new tools ✨
- 🔀 NGSCheckmate to find sample swaps
- 🧬 Sentieon DNAScope Support
- 📏 CNVKit Genemetrics
- 🔬 BCFTools annotate
Special shout-out to Grant Neilson, Simon Pearce, and Raquel Manzano for their first contributions 😍 and everyone that helped out!
- 🔀 NGSCheckmate to find sample swaps
- 🧬 Sentieon DNAScope Support
- 📏 CNVKit Genemetrics
- 🔬 BCFTools annotate
Special shout-out to Grant Neilson, Simon Pearce, and Raquel Manzano for their first contributions 😍 and everyone that helped out!
Pipeline release! nf-core/sarek v3.4.0 - Sarek 3.4.0 - Pårtetjåkko!
Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.4.0
Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.4.0
November 16, 2023 at 8:11 AM
A new release is out with a few new tools ✨
- 🔀 NGSCheckmate to find sample swaps
- 🧬 Sentieon DNAScope Support
- 📏 CNVKit Genemetrics
- 🔬 BCFTools annotate
Special shout-out to Grant Neilson, Simon Pearce, and Raquel Manzano for their first contributions 😍 and everyone that helped out!
- 🔀 NGSCheckmate to find sample swaps
- 🧬 Sentieon DNAScope Support
- 📏 CNVKit Genemetrics
- 🔬 BCFTools annotate
Special shout-out to Grant Neilson, Simon Pearce, and Raquel Manzano for their first contributions 😍 and everyone that helped out!
Reposted by Friederike Hanssen
Not enough people know about bioicons.com
Open source vector graphics. Free alternatives to BioRender.
Open source vector graphics. Free alternatives to BioRender.
November 8, 2023 at 3:17 PM
Not enough people know about bioicons.com
Open source vector graphics. Free alternatives to BioRender.
Open source vector graphics. Free alternatives to BioRender.
Reposted by Friederike Hanssen
Pipeline release! nf-core/airrflow v3.2.0 - nf-core/airrflow version 3.2.0 "Expecto patronum"!
Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/3.2.0
Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/3.2.0
October 27, 2023 at 1:24 PM
Pipeline release! nf-core/airrflow v3.2.0 - nf-core/airrflow version 3.2.0 "Expecto patronum"!
Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/3.2.0
Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/3.2.0
Reposted by Friederike Hanssen
🎉 Massive shoutout to Seqera Labs for yet another incredible #NextflowSummit! 🙌
🌟 This is truly one of the best hybrid conference experiences. Here’s why:
1/🧵
📺 HQ Dual video: slides + the presenter. Clear visuals are so commonly overlooked with virtual conferences. 👏
🌟 This is truly one of the best hybrid conference experiences. Here’s why:
1/🧵
📺 HQ Dual video: slides + the presenter. Clear visuals are so commonly overlooked with virtual conferences. 👏
October 22, 2023 at 6:50 AM
🎉 Massive shoutout to Seqera Labs for yet another incredible #NextflowSummit! 🙌
🌟 This is truly one of the best hybrid conference experiences. Here’s why:
1/🧵
📺 HQ Dual video: slides + the presenter. Clear visuals are so commonly overlooked with virtual conferences. 👏
🌟 This is truly one of the best hybrid conference experiences. Here’s why:
1/🧵
📺 HQ Dual video: slides + the presenter. Clear visuals are so commonly overlooked with virtual conferences. 👏
Reposted by Friederike Hanssen
👏 Just caught @rikehanssen.bsky.social awesome talk at #NextflowSummit 2023! 🚀 Exploring nf-core/sarek's journey, evolution, and the exciting progress in optimisation 🧬 #Bioinformatics #Nextflow #Sarek
October 19, 2023 at 4:26 PM
👏 Just caught @rikehanssen.bsky.social awesome talk at #NextflowSummit 2023! 🚀 Exploring nf-core/sarek's journey, evolution, and the exciting progress in optimisation 🧬 #Bioinformatics #Nextflow #Sarek
Reposted by Friederike Hanssen
🧬🖥️ The Sarek pipeline from #nfcore deserves a lot more attention.! Input fastq, bams, crams, vcfs - get a full state-of-the-art analysis. Rare to see such well maintained and flexible software in the open domain, please support:
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant d...
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
September 25, 2023 at 10:40 AM
🧬🖥️ The Sarek pipeline from #nfcore deserves a lot more attention.! Input fastq, bams, crams, vcfs - get a full state-of-the-art analysis. Rare to see such well maintained and flexible software in the open domain, please support:
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Friederike Hanssen
The first community Advanced
Nextflow
training sessions come out today! Starting in a few hours, registrations here: nf-co.re/events/2023...
Huge thanks to the
@nf-co.re team. See you there!
Nextflow
training sessions come out today! Starting in a few hours, registrations here: nf-co.re/events/2023...
Huge thanks to the
@nf-co.re team. See you there!
September 27, 2023 at 10:20 AM
The first community Advanced
Nextflow
training sessions come out today! Starting in a few hours, registrations here: nf-co.re/events/2023...
Huge thanks to the
@nf-co.re team. See you there!
Nextflow
training sessions come out today! Starting in a few hours, registrations here: nf-co.re/events/2023...
Huge thanks to the
@nf-co.re team. See you there!