Ronan
omalley-regulome.bsky.social
Ronan
@omalley-regulome.bsky.social
Plants, genomic, other stuff
Reposted by Ronan
Thank you to everyone who attended the 1st Great Lakes Plant Science Conference and helped make it a success! This inaugural meeting brought together 416 registrants from 55 institutions. Together, we’ve built momentum for the future of #plantscience in the Great Lakes region and beyond! #GLPSC2025
September 15, 2025 at 5:16 PM
Reposted by Ronan
MSU is great place to do plant science research. My lab will be a great place to develop new expertise in genomics and plant molecular biology.

Application instruction and link: careers.msu.edu/jobs/researc...

Please email me if you have any questions.
Research Associate-Fixed Term - East Lansing, Michigan, United States
Position Summary The Li lab in the Department of Plant Biology is recruiting a postdoctoral research associate to work on project(s) in plant molecular biology, biochemistry, and/or genomics. The idea...
careers.msu.edu
September 4, 2025 at 2:00 PM
Reposted by Ronan
Please share! I'm looking for a postdoc. The position is to lead one of the following projects: 1) regulation of plant specialized metabolism by cell fate, or 2) foliar embryogenesis in the succulent plant Kalanchoe.

Learn more abt projects: cxli233.github.io/cxLi_lab/res...
Plant cells are totipotent, meaning individual cells have the potential to develop into a full organism, a property unique to the zygote for animals. However, in most species for most cells, plant cells are not spontaneously totipotent, since they must be treated with specific hormone combinations to unlock their totipotency. Species within the Kalanchoe genus is unique as they spontaneously develop foliar embryos that are fully realized plantlets with shoot and root from notches along the edges of leaves. We speculate that the progenitor cells that give rise to these foliar embryos are totipotent, and we are using single cell techniques to identify & characterize them. In addition to being a fundamental process for plant biology, we foresee unlocking totipotency has many biotechnological applications, such as faciliating genetic transformation and the development of synthetic organs of biomanufacturing.
cxli233.github.io
September 4, 2025 at 2:00 PM
Reposted by Ronan
Our #research on #drought #recovery, now published with @springernature.com in @natcomms.nature.com:
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...

Read thread below 👇
Drought recovery in plants triggers a cell-state-specific immune activation - Nature Communications
Post-drought rehydration triggers a preventive immune response in plants, revealing targets to enhance crop resilience by linking drought stress recovery with improved pathogen resistance.
doi.org
August 31, 2025 at 2:17 AM
Reposted by Ronan
delighted to share work from my postdoc @cshlnews.bsky.social - here, we use TurboID in maize meristems to be able to resolve CLV receptor interactions, unlocking its potential to resolve in vivo receptor interactions important for meristem signaling.
Antagonistic interactions between CLAVATA receptors shape maize ear development https://www.biorxiv.org/content/10.1101/2025.08.04.667500v1
August 6, 2025 at 8:45 PM
Reposted by Ronan
Single-cell-level response to drought in Sorghum bicolor reveals novel targets for improving water use efficiency https://www.biorxiv.org/content/10.1101/2025.08.28.671794v1
August 29, 2025 at 1:03 AM
Our new Nature Plants paper is out (and we’re on the cover 😁)!👉 bit.ly/4lS8sOB
By combining scRNA-seq with conserved TF binding (multiDAP) we define gene regulatory networks for 65 cell types across 4 tissues in a wide range of flowering plants!
August 28, 2025 at 2:06 PM
Reposted by Ronan
A great example of how comparative genomics across the full range of vascular plant lineages can be used as a catalyst for gene discovery!
Exciting new single cell datasets for gymnosperms, ferns and lycophytes!
The scale of this study is really amazing!
www.cell.com/cell/fulltex...
A unified cell atlas of vascular plants reveals cell-type foundational genes and accelerates gene discovery
A cross-species single-cell atlas highlights a core subset of cell-type foundational genes associated with major vascular plant cell types, enabling the identification of hidden cell types and the dev...
www.cell.com
August 20, 2025 at 4:13 PM
Reposted by Ronan
The August issue is now fully online, with a beautiful cover that might be a nostalgia trigger for some of us (young people can find an explanation in the Editorial):

www.nature.com/nplants/volu...
August 20, 2025 at 11:18 AM
Reposted by Ronan
This project was a huge team effort with five(!) co-first authors, including JGI scientists @leobaumgart.bsky.social, @abmora.bsky.social, Peng Wang, and Yu Zhang each playing crucial roles, and @omalley-regulome.bsky.social at the helm.
An amazing group!
August 19, 2025 at 11:58 PM