Nitesh Khandelwal
nkhandelwal.bsky.social
Nitesh Khandelwal
@nkhandelwal.bsky.social
Research Assistant Professor at OHSU.
Structure biology| Drug resistance| Transporter| Cryo-EM| Membrane proteins|Microbiology|
Past: #UCSF, Research Specialist II | Bio5 postdoctoral fellow @uaarizona | #ICGEB #JNU #MSU
Reposted by Nitesh Khandelwal
Events celebrating women in electron microscopy are rare, which made my recent experience at the Ernst Ruska-Centre (ER-C), Forschungszentrum Jülich, Germany, truly special. I had the privilege of not only attending but also serving as a young keynote speaker at this inspiring gathering. 🎉
October 14, 2025 at 12:32 AM
Reposted by Nitesh Khandelwal
Curious to know how does auxiliary subunit Neto2 modulate kainate receptor (KAR) function? Read our latest study describing GluK2-Neto2 complex-captured in both its activated and true apo states.

www.nature.com/articles/s41...
Activation of kainate receptor GluK2–Neto2 complex - Nature Structural & Molecular Biology
Gangwar et al. present cryo-electron microscopy structures of GluK2 kainate receptors with auxiliary subunit Neto2 and reveal the basis of receptor activation.
www.nature.com
August 22, 2025 at 7:36 PM
Check out our new study revealing how yeast cells regulate oxidative stress.
Structural Basis for Oxidized Glutathione Recognition by Yeast Cadmium Factor 1 pubmed.ncbi.nlm.nih.gov/40679299/ #cryoem
July 20, 2025 at 8:32 PM
Reposted by Nitesh Khandelwal
Our latest preprint on peroxisomal fatty-acid transport is live!!

@ohsunews.bsky.social #OHSU @uofcalifornia.bsky.social #UCSF
Molecular mechanism of substrate transport by human peroxisomal ABCD3 https://www.biorxiv.org/content/10.1101/2025.05.21.655323v1
May 27, 2025 at 9:05 AM
Reposted by Nitesh Khandelwal
Congratulations to all the co-authors-
🙌 🎉 🥳
@nkhandelwal.bsky.social, Devin J Seka, Sree G Balasubramani, Miles S Dickinson, Alexander Myasnikov, @igech.bsky.social, Robert M Stroud.
May 27, 2025 at 9:05 AM
Reposted by Nitesh Khandelwal
I'm excited to share our lab's newest publication on the structure and pharmacology of human GABA transporter 3 @natcomms.nature.com. Much to our surprise, GAT3 adopts an inward-open conformation in complex with the (moderately) selective antagonist SNAP-5114. 💊 🧪 #CryoEM #OpenAccess rdcu.be/ei2KY
Molecular basis of human GABA transporter 3 inhibition
Nature Communications - GABA transporters maintain GABA homeostasis and regulate synaptic signaling. Here, the authors determined the cryoEM structures of GABA transporter 3 (GAT3) in its apo form...
urldefense.com
April 23, 2025 at 9:37 PM
Reposted by Nitesh Khandelwal
🦠🧠 MemBrain update! 🧠🦠
We’ve updated our preprint! It now covers the full MemBrain v2 pipeline for end-to-end membrane analysis in #CryoET: segmentation, particle picking, and spatial statistics.
🔗 Preprint: doi.org/10.1101/2024...
🔗 Code: github.com/CellArchLab/...
🧵(1/6) #TeamTomo
April 25, 2025 at 7:28 AM
Reposted by Nitesh Khandelwal
Hurray, it is finally out! Meet bacteriophage Bxb1 - the subject of my first full-phage cryo-EM study. My structures are beautifully complemented by the Park Lab’s cryo-ET analysis, shedding light on mycobacteriophage structural changes during infection.

www.sciencedirect.com/science/arti...
Structure and infection dynamics of mycobacteriophage Bxb1
Mycobacteriophage Bxb1 is a well-characterized virus of Mycobacterium smegmatis with double-stranded DNA and a long, flexible tail. Mycobacteriophages…
www.sciencedirect.com
April 16, 2025 at 12:50 PM
Reposted by Nitesh Khandelwal
#CryoSPARC v4.7 is out! 🚀 
Featuring a new automatic Micrograph Junk Detector that labels and rejects contaminants, new tools for curating subsets of particles, performance and stability fixes, and more!
Full changelog: cryosparc.com/updates

#cryoEM
April 9, 2025 at 2:14 PM
Our paper on " Structure and inhibition mechanisms of Mycobacterium tuberculosis essential transporter efflux protein A" is published in Nature Communications 🥂 🎊

www.nature.com/articles/s41...
Structure and inhibition mechanisms of Mycobacterium tuberculosis essential transporter efflux protein A - Nature Communications
A chemical genetic screen identified inhibitors of an essential transporter from Mycobacterium tuberculosis. Here authors determine atomic structures of EfpA that indicate that it is a lipid transport...
www.nature.com
April 3, 2025 at 5:19 PM
Reposted by Nitesh Khandelwal
I am super excited to share that my work at @yifan_ucsf has just been published in Nature🎉 From developing pYC KI system, it was a long journey to understand endogenous protein dynamics. I appreciate the support from FASN team! 🕺Let's dive into the endogenous & dynamic protein world🏊🏄🚣
March 2, 2025 at 10:25 AM
Reposted by Nitesh Khandelwal
Coot 1.1.14 has been released!

Coming to homebrew and flatpak soon!

- Clark & Labute comes to Coot 1, Moorhen & chapi!
(svg, 2D ligand environment view)
- Solid Symmetry (symmetry that you can see!)
- PAE plot for AlphaFold models
#coot
#molmatinf
March 17, 2025 at 7:48 PM
Reposted by Nitesh Khandelwal
ChimeraX can be used to find pockets and cavities in protein structures using the Find Cavities tool or kvfinder command. This feature is available in daily builds from 10 March 2025 or later.
March 17, 2025 at 8:26 PM
Reposted by Nitesh Khandelwal
#NIHFundedDiscovery

How do cells avoid the "kiss of death"?

Gap junctions share life-saving signals—but under stress, they shut down to prevent spreading cytotoxic damage.

#CryoEM reveals the molecular switches behind this process!

www.biorxiv.org/content/10.1...

www.biorxiv.org/content/10.1...
February 21, 2025 at 11:27 PM
I am happy to share my new publication in PNAS entitled “Structural basis of disease mutation and substrate recognition by the human SLC2A9 transporter” (www.pnas.org/doi/full/10....).
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
www.pnas.org
February 21, 2025 at 8:16 PM
Reposted by Nitesh Khandelwal
Our paper "Structural basis of aquaporin-4 autoantibody binding in neuromyelitis optica" is published in Science Advances today 🥂 🎊

tinyurl.com/MGuptaSA

Huge congratulations to the team- @nkhandelwal.bsky.social, Andrew Nelson, Peter Hwang, Sergei Pourmal, Jeffrey Bennett, ROBERT M STROUD!
Structural basis of aquaporin-4 autoantibody binding in neuromyelitis optica
Pathogenic autoantibodies in neuromyelitis optica bind three multiply presented loops on arrays of human aquaporin-4.
tinyurl.com
February 21, 2025 at 8:08 PM