Janani Durairaj (Jay)
@ninjani.bsky.social
Computational biologist @biozentrum.bsky.social. Likes protein structures.
https://ninjani.github.io/
https://ninjani.github.io/
Reposted by Janani Durairaj (Jay)
Thanks a lot for the review! We somehow missed it until quite recently but I think addressed a good chunk of the comments in revision anyway, looking forward to your thoughts when it's out
January 5, 2026 at 9:40 AM
Thanks a lot for the review! We somehow missed it until quite recently but I think addressed a good chunk of the comments in revision anyway, looking forward to your thoughts when it's out
Reposted by Janani Durairaj (Jay)
Océane Follonier @oceanef.bsky.social for
“From bytes to binders: design, score and optimize” #bc2basel #posterprize
“From bytes to binders: design, score and optimize” #bc2basel #posterprize
September 10, 2025 at 2:54 PM
Océane Follonier @oceanef.bsky.social for
“From bytes to binders: design, score and optimize” #bc2basel #posterprize
“From bytes to binders: design, score and optimize” #bc2basel #posterprize
Reposted by Janani Durairaj (Jay)
The big difference is in the pairing. The MMseqs2 server pairs sequences based on species, while our old HHblits MSAs were paired based on genome proximity (number of genes apart). Working w/ @milot.bsky.social and @martinsteinegger.bsky.social we implemented the proximity filtering in server (3/4)
August 5, 2025 at 7:39 AM
The big difference is in the pairing. The MMseqs2 server pairs sequences based on species, while our old HHblits MSAs were paired based on genome proximity (number of genes apart). Working w/ @milot.bsky.social and @martinsteinegger.bsky.social we implemented the proximity filtering in server (3/4)