Lars Podsiadlowski
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lpodsiadlowski.bsky.social
Lars Podsiadlowski
@lpodsiadlowski.bsky.social
160 followers 190 following 1 posts
Scientific lab head at a natural history museum (LIB / Museum König Bonn, Germany). Research in animal genomics & evolution (insects, fish), teaching bioinformatics. Enjoying literature & history, 50/60s Jazz and arthouse movies.
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Reposted by Lars Podsiadlowski
yjluo.bsky.social
To support genome structure studies in non-model systems, we developed SyntenyFinder, a synteny analysis pipeline combining OrthoFinder and RIdeogram. Learn more on our GitHub: github.com/symgenoevola...
GitHub - symgenoevolab/SyntenyFinder: SyntenyFinder contains a collection of scripts to easily perform and visualize macrosynteny analysis when provided with the accessions of annotated chromosome-lev...
SyntenyFinder contains a collection of scripts to easily perform and visualize macrosynteny analysis when provided with the accessions of annotated chromosome-level genome assemblies from NCBI. - s...
github.com
January 7, 2025 at 6:20 AM
Reposted by Lars Podsiadlowski
jrossibarra.bsky.social
You need to use PIXY with a gvcf, ANGSD with genotype likelihoods, or MOP to estimate the number of bp with data in each window to use as a denominator.

pixy.readthedocs.io
www.popgen.dk/angsd/index....
github.com/RILAB/mop
GitHub - RILAB/mop: Simple tool for capturing alignment regions with sufficient quality for genotypi...
Simple tool for capturing alignment regions with sufficient quality for genotyping. - GitHub - RILAB/mop: Simple tool for capturing alignment regions with sufficient quality for genotyping.
github.com
February 1, 2024 at 5:20 PM