Jacob Nye
@jacobnye.bsky.social
Neuroscientist | Biomedical Engineer | PhD Candidate at Columbia University
My research focuses on neural circuit changes, working memory deficits, and adult neurogenesis, using advanced imaging techniques like confocal and light-sheet microscopy
My research focuses on neural circuit changes, working memory deficits, and adult neurogenesis, using advanced imaging techniques like confocal and light-sheet microscopy
This looks useful for anyone developing python scripts across platforms
There's one thing I've been REALLY enjoying using uv for: writing standalone #Python scripts that require third-party dependencies.
I stick this in the top of the file and it just works! 👇
#!/usr/bin/env -S uv run --quiet --script
# /// script
# dependencies = [
# "openai==0.27.2",
# ]
# ///
I stick this in the top of the file and it just works! 👇
#!/usr/bin/env -S uv run --quiet --script
# /// script
# dependencies = [
# "openai==0.27.2",
# ]
# ///
Lazy self-installing Python scripts with uv
I frequently find myself writing my own short command-line scripts in Python that help me with day-to-day tasks. It’s so easy to throw together …
treyhunner.com
December 21, 2024 at 5:31 AM
This looks useful for anyone developing python scripts across platforms
Reposted by Jacob Nye
I have a similar set of custom instructions I use with Claude Artifacts to get it to produce mobile-friendly single page HTML apps that run without a build step
December 19, 2024 at 1:47 PM
I have a similar set of custom instructions I use with Claude Artifacts to get it to produce mobile-friendly single page HTML apps that run without a build step
Highly appreciate the benchmarks and comparisons between models for each of these bio image analysis tasks. Would be curious how the updated Claude, o1, and o1 pro compare although the latter may be not be currently possible since outside the API
My #I2K2024 lecture about "BioImage Analysis Code Generation" (using #LLMs) is now on #YouTube. 🔬💻🤖
Big thanks again to @bioimagingna.bsky.social for having me! Also check out the other session recordings! Lots of useful BIA tools demostrated and explained! ⤵️
youtu.be/sBcV8rasOWo?...
Big thanks again to @bioimagingna.bsky.social for having me! Also check out the other session recordings! Lots of useful BIA tools demostrated and explained! ⤵️
youtu.be/sBcV8rasOWo?...
December 21, 2024 at 5:26 AM
Highly appreciate the benchmarks and comparisons between models for each of these bio image analysis tasks. Would be curious how the updated Claude, o1, and o1 pro compare although the latter may be not be currently possible since outside the API
Reposted by Jacob Nye
Our latest interview is with Florian Jug @bioimagecomputing.com @humantechnopole.bsky.social. We discussed Florian’s career path, his current research and the importance of making research FAIR.
journals.biologists.com/jcs/article/...
journals.biologists.com/jcs/article/...
November 27, 2024 at 10:43 AM
Our latest interview is with Florian Jug @bioimagecomputing.com @humantechnopole.bsky.social. We discussed Florian’s career path, his current research and the importance of making research FAIR.
journals.biologists.com/jcs/article/...
journals.biologists.com/jcs/article/...
Didn’t know these were out already. Thanks for sharing
You can now watch the I2K video tutorial on #micro-sam by @anwaiarchit.bsky.social on YouTube: www.youtube.com/watch?v=dxjU... Check it out for an in-depth explanation for how to use our tool to segment your microscopy images.
Segment Anything for Microscopy
YouTube video by I2K Conference
www.youtube.com
December 21, 2024 at 5:09 AM
Didn’t know these were out already. Thanks for sharing
Reposted by Jacob Nye
Less than 30 years from Gila Monster saliva to treatment for diabetes, weight loss, compulsive behavior and, now, sleep apnea. SCIENCE ROCKS!
December 21, 2024 at 2:27 AM
Less than 30 years from Gila Monster saliva to treatment for diabetes, weight loss, compulsive behavior and, now, sleep apnea. SCIENCE ROCKS!
Reposted by Jacob Nye
A big day of output for the Human Cell Atlas, a global collaborative project with 100 countries to understand our ~37 trillion cells
A Wikipedia of our cells, a "remarkable achievement"
nature.com/articles/d41...
nature.com/immersive/d4...
A Wikipedia of our cells, a "remarkable achievement"
nature.com/articles/d41...
nature.com/immersive/d4...
November 20, 2024 at 5:04 PM
A big day of output for the Human Cell Atlas, a global collaborative project with 100 countries to understand our ~37 trillion cells
A Wikipedia of our cells, a "remarkable achievement"
nature.com/articles/d41...
nature.com/immersive/d4...
A Wikipedia of our cells, a "remarkable achievement"
nature.com/articles/d41...
nature.com/immersive/d4...