Ido Nir (INlab)
@idonir.bsky.social
Reposted by Ido Nir (INlab)
Tomato drought-responsive transcription factor TINY1 suppresses embryonic growth https://www.biorxiv.org/content/10.1101/2025.10.22.683859v1
October 23, 2025 at 7:04 PM
Tomato drought-responsive transcription factor TINY1 suppresses embryonic growth https://www.biorxiv.org/content/10.1101/2025.10.22.683859v1
Reposted by Ido Nir (INlab)
A deep-time landscape of plant cis-regulatory sequence evolution https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1
September 19, 2025 at 3:03 PM
A deep-time landscape of plant cis-regulatory sequence evolution https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1
Reposted by Ido Nir (INlab)
Our #research on #drought #recovery, now published with @springernature.com in @natcomms.nature.com:
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...
Read thread below 👇
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...
Read thread below 👇
Drought recovery in plants triggers a cell-state-specific immune activation - Nature Communications
Post-drought rehydration triggers a preventive immune response in plants, revealing targets to enhance crop resilience by linking drought stress recovery with improved pathogen resistance.
doi.org
August 31, 2025 at 2:17 AM
Our #research on #drought #recovery, now published with @springernature.com in @natcomms.nature.com:
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...
Read thread below 👇
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...
Read thread below 👇
Reposted by Ido Nir (INlab)
New OA Resource: "A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle" rdcu.be/eBmkU
An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.
An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.
August 19, 2025 at 10:36 AM
New OA Resource: "A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle" rdcu.be/eBmkU
An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.
An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.
Reposted by Ido Nir (INlab)
We are excited to announce the PCA Imaging Workshop Webinar Series: FIJI Basics for Visualizing and Quantifying Plant Images!
This workshop will be held on Wednesday, September 24, 2025 at 7:30am PT/9:30am CT/10:30am ET.
Register Now! bit.ly/45zJE7V
@radinbio.bsky.social @rheelab.bsky.social
This workshop will be held on Wednesday, September 24, 2025 at 7:30am PT/9:30am CT/10:30am ET.
Register Now! bit.ly/45zJE7V
@radinbio.bsky.social @rheelab.bsky.social
August 15, 2025 at 5:05 PM
We are excited to announce the PCA Imaging Workshop Webinar Series: FIJI Basics for Visualizing and Quantifying Plant Images!
This workshop will be held on Wednesday, September 24, 2025 at 7:30am PT/9:30am CT/10:30am ET.
Register Now! bit.ly/45zJE7V
@radinbio.bsky.social @rheelab.bsky.social
This workshop will be held on Wednesday, September 24, 2025 at 7:30am PT/9:30am CT/10:30am ET.
Register Now! bit.ly/45zJE7V
@radinbio.bsky.social @rheelab.bsky.social
Reposted by Ido Nir (INlab)
Very proud to share our latest preprint: postdoc/LRSF fellow Yue Rui studies the mechanisms regulating attachment of the cell wall to the plasma membrane. The Cellulose Synthase Complex and REMORINs determine the extent of attachment and root osmotic stress tolerance. www.biorxiv.org/content/10.1...
August 3, 2025 at 3:53 AM
Very proud to share our latest preprint: postdoc/LRSF fellow Yue Rui studies the mechanisms regulating attachment of the cell wall to the plasma membrane. The Cellulose Synthase Complex and REMORINs determine the extent of attachment and root osmotic stress tolerance. www.biorxiv.org/content/10.1...
Reposted by Ido Nir (INlab)
Less than a week left to apply! 🌱💚
We're looking for a new PhD candidate to join the lab. Please share 🌱😄
July 17, 2025 at 5:39 AM
Less than a week left to apply! 🌱💚
Reposted by Ido Nir (INlab)
We're looking for a new PhD candidate to join the lab. Please share 🌱😄
June 5, 2025 at 5:37 AM
We're looking for a new PhD candidate to join the lab. Please share 🌱😄
Reposted by Ido Nir (INlab)
A new preprint!
Inspired by Kleiber's law, we show how growth rate scales with biomass in wheat, and how this scaling connects resource use to reproduction and grain yield in diverse environments.
www.biorxiv.org/content/10.1...
Inspired by Kleiber's law, we show how growth rate scales with biomass in wheat, and how this scaling connects resource use to reproduction and grain yield in diverse environments.
www.biorxiv.org/content/10.1...
Scaling law links plant growth variation to grain yield in wheat stands
Growth rate, a key trait influencing plant resource use, scales predictably with plant mass, following remarkably consistent allometric power laws shaped by biophysical constraints and natural selecti...
www.biorxiv.org
May 24, 2025 at 7:32 PM
A new preprint!
Inspired by Kleiber's law, we show how growth rate scales with biomass in wheat, and how this scaling connects resource use to reproduction and grain yield in diverse environments.
www.biorxiv.org/content/10.1...
Inspired by Kleiber's law, we show how growth rate scales with biomass in wheat, and how this scaling connects resource use to reproduction and grain yield in diverse environments.
www.biorxiv.org/content/10.1...
Reposted by Ido Nir (INlab)
📢 It's online (and open access) @newphyt.bsky.social
🍅
nph.onlinelibrary.wiley.com/doi/full/10....
"Autophagy restricts tomato fruit ripening via a general role in ethylene repression"
& why timing is everything...
Let's dig into it 👇
#plantscience
#autophagy
@volcaniinstitute.bsky.social
🍅
nph.onlinelibrary.wiley.com/doi/full/10....
"Autophagy restricts tomato fruit ripening via a general role in ethylene repression"
& why timing is everything...
Let's dig into it 👇
#plantscience
#autophagy
@volcaniinstitute.bsky.social
May 9, 2025 at 12:00 PM
📢 It's online (and open access) @newphyt.bsky.social
🍅
nph.onlinelibrary.wiley.com/doi/full/10....
"Autophagy restricts tomato fruit ripening via a general role in ethylene repression"
& why timing is everything...
Let's dig into it 👇
#plantscience
#autophagy
@volcaniinstitute.bsky.social
🍅
nph.onlinelibrary.wiley.com/doi/full/10....
"Autophagy restricts tomato fruit ripening via a general role in ethylene repression"
& why timing is everything...
Let's dig into it 👇
#plantscience
#autophagy
@volcaniinstitute.bsky.social
Reposted by Ido Nir (INlab)
We have a postdoc position that just opened up in the Brady lab on reprogramming tomato root system architecture in response to changes in nutrient availability - please consider applying! recruit.ucdavis.edu/JPF07095
Postdoctoral Researcher- Brady Lab
University of California, Davis is hiring. Apply now!
recruit.ucdavis.edu
April 19, 2025 at 2:15 PM
We have a postdoc position that just opened up in the Brady lab on reprogramming tomato root system architecture in response to changes in nutrient availability - please consider applying! recruit.ucdavis.edu/JPF07095
Reposted by Ido Nir (INlab)
Our lab's first review article written with @yadhusankar.bsky.social and @vijayalakshmi.bsky.social is out now in The Plant Journal! 🎉🌱
We discuss temporal regulation of (plant) development. When and how do plants control organ and cell identity progression?
onlinelibrary.wiley.com/doi/10.1111/...
We discuss temporal regulation of (plant) development. When and how do plants control organ and cell identity progression?
onlinelibrary.wiley.com/doi/10.1111/...
A space for time. Exploring temporal regulation of plant development across spatial scales
Developmental timing in plants is tightly regulated at the whole-organism scale, from germination to flowering. Less is known about when and how local transitions are temporally regulated. Not every ...
onlinelibrary.wiley.com
April 3, 2025 at 9:30 AM
Our lab's first review article written with @yadhusankar.bsky.social and @vijayalakshmi.bsky.social is out now in The Plant Journal! 🎉🌱
We discuss temporal regulation of (plant) development. When and how do plants control organ and cell identity progression?
onlinelibrary.wiley.com/doi/10.1111/...
We discuss temporal regulation of (plant) development. When and how do plants control organ and cell identity progression?
onlinelibrary.wiley.com/doi/10.1111/...
Reposted by Ido Nir (INlab)
The first paper from my lab is now online in @ThePlantCell 🌱 doi.org/10.1093/plce...
This work is dedicated to the late Prof. Joanne Chory, who profoundly shaped my journey in science and beyond.
Thank you to everyone involved: Srinivas Kunta, Yardena Dahan, Shai Torgeman, @Volacninstitute.
This work is dedicated to the late Prof. Joanne Chory, who profoundly shaped my journey in science and beyond.
Thank you to everyone involved: Srinivas Kunta, Yardena Dahan, Shai Torgeman, @Volacninstitute.
Species-specific PHYTOCHROME-INTERACTING FACTOR utilization in the plant morphogenetic response to environmental stimuli
Specific PHYTOCHROME-INTERACTING FACTOR members regulate shade avoidance in Arabidopsis and tomato but are not required for thermomorphogenesis-induced ste
doi.org
March 16, 2025 at 9:00 AM
The first paper from my lab is now online in @ThePlantCell 🌱 doi.org/10.1093/plce...
This work is dedicated to the late Prof. Joanne Chory, who profoundly shaped my journey in science and beyond.
Thank you to everyone involved: Srinivas Kunta, Yardena Dahan, Shai Torgeman, @Volacninstitute.
This work is dedicated to the late Prof. Joanne Chory, who profoundly shaped my journey in science and beyond.
Thank you to everyone involved: Srinivas Kunta, Yardena Dahan, Shai Torgeman, @Volacninstitute.
Reposted by Ido Nir (INlab)
Even little cities (Palo Alto) know it's important to #standupforscience in
March 7, 2025 at 9:35 PM
Even little cities (Palo Alto) know it's important to #standupforscience in
Reposted by Ido Nir (INlab)
Great work showing the multifaceted role of FAMA regulating differentiation in stomatal and myrosin cells.
Also check out my News & Views piece 📝 As a stomatal enthusiast I was especially intrigued by the potential separation of division and differentiation phenotypes 🌱🤔
Also check out my News & Views piece 📝 As a stomatal enthusiast I was especially intrigued by the potential separation of division and differentiation phenotypes 🌱🤔
New OA Article: "Co-option and neofunctionalization of stomatal executors for defence against herbivores in Brassicales" rdcu.be/ea2gZ
Alliterative-titled News & Views: "Finding factors that enforce the multifaceted functions of FAMA" rdcu.be/ea2he
Alliterative-titled News & Views: "Finding factors that enforce the multifaceted functions of FAMA" rdcu.be/ea2he
February 25, 2025 at 10:36 AM
Great work showing the multifaceted role of FAMA regulating differentiation in stomatal and myrosin cells.
Also check out my News & Views piece 📝 As a stomatal enthusiast I was especially intrigued by the potential separation of division and differentiation phenotypes 🌱🤔
Also check out my News & Views piece 📝 As a stomatal enthusiast I was especially intrigued by the potential separation of division and differentiation phenotypes 🌱🤔
Reposted by Ido Nir (INlab)
In this interview, Dominique Bergmann @stanfordstomata.bsky.social talks about her research in stomatal development, her role as an Editor at Development, and how her passion for comparative biology has influenced her career:
https://doi.org/10.1242/dev.204667
https://doi.org/10.1242/dev.204667
February 24, 2025 at 9:51 AM
In this interview, Dominique Bergmann @stanfordstomata.bsky.social talks about her research in stomatal development, her role as an Editor at Development, and how her passion for comparative biology has influenced her career:
https://doi.org/10.1242/dev.204667
https://doi.org/10.1242/dev.204667
Reposted by Ido Nir (INlab)
Proud to share our latest published work on moisture responsive root development-a process we call hydropatterning! We find that this process has been under differential selection during maize breeding and the gaseous hormone ethylene prevents branching in air.
www.science.org/doi/epdf/10....
www.science.org/doi/epdf/10....
Moisture-responsive root-branching pathways identified in diverse maize breeding germplasm
Plants grow complex root systems to extract unevenly distributed resources from soils. Spatial differences in soil moisture are perceived by root tips, leading to the patterning of new root branches t...
www.science.org
February 6, 2025 at 7:47 PM
Proud to share our latest published work on moisture responsive root development-a process we call hydropatterning! We find that this process has been under differential selection during maize breeding and the gaseous hormone ethylene prevents branching in air.
www.science.org/doi/epdf/10....
www.science.org/doi/epdf/10....
Reposted by Ido Nir (INlab)
1/4 Delighted to share our latest preprint "Future heatwave conditions inhibit CO2-induced stomatal closure in wheat". We found that high CO2, high VPD heatwave treatment prevents stomatal responses to light, super-elevated CO2 and nitrogen fertiliser application. www.biorxiv.org/content/10.1...
January 23, 2025 at 7:17 AM
1/4 Delighted to share our latest preprint "Future heatwave conditions inhibit CO2-induced stomatal closure in wheat". We found that high CO2, high VPD heatwave treatment prevents stomatal responses to light, super-elevated CO2 and nitrogen fertiliser application. www.biorxiv.org/content/10.1...
Reposted by Ido Nir (INlab)
Delighted to announce the 18th #FASEB Mechanisms of Plants Development will take place Aug 24-28th. ‼️ Register before June 29th → tinyurl.com/24fsjq6a
🌱 🎁 Vote for the conference image by Jan 31st
→ tinyurl.com/2872w6vm
The poster & speakers lineup will be announced in early Feb.
Spread the word!
🌱 🎁 Vote for the conference image by Jan 31st
→ tinyurl.com/2872w6vm
The poster & speakers lineup will be announced in early Feb.
Spread the word!
January 8, 2025 at 8:51 PM
Delighted to announce the 18th #FASEB Mechanisms of Plants Development will take place Aug 24-28th. ‼️ Register before June 29th → tinyurl.com/24fsjq6a
🌱 🎁 Vote for the conference image by Jan 31st
→ tinyurl.com/2872w6vm
The poster & speakers lineup will be announced in early Feb.
Spread the word!
🌱 🎁 Vote for the conference image by Jan 31st
→ tinyurl.com/2872w6vm
The poster & speakers lineup will be announced in early Feb.
Spread the word!
Reposted by Ido Nir (INlab)
This story was only possible through true team effort. Team Kalanchoë with Xin at the forefront. @jameshartwell.bsky.social, the most generous scientist who shared resources and answered countless questions. Read about MUTE during stomatal development in Kalanchoë www.biorxiv.org/content/10.1...
December 28, 2024 at 2:38 PM
This story was only possible through true team effort. Team Kalanchoë with Xin at the forefront. @jameshartwell.bsky.social, the most generous scientist who shared resources and answered countless questions. Read about MUTE during stomatal development in Kalanchoë www.biorxiv.org/content/10.1...
Reposted by Ido Nir (INlab)
Big shout out also to our team and of course our wonderful research gardeners, in particular Jasmin Sekulovski, for the help in establishing horticultural protocols for K. laxiflora.
December 28, 2024 at 2:43 PM
Big shout out also to our team and of course our wonderful research gardeners, in particular Jasmin Sekulovski, for the help in establishing horticultural protocols for K. laxiflora.
Reposted by Ido Nir (INlab)
Big shout out to the U. Liverpool team. None of this would have been possible without the generous support and wonderful resources from @jameshartwell.bsky.social and his team - thank you all so much, you are true role models for open and collaborative science.
December 28, 2024 at 2:43 PM
Big shout out to the U. Liverpool team. None of this would have been possible without the generous support and wonderful resources from @jameshartwell.bsky.social and his team - thank you all so much, you are true role models for open and collaborative science.
Reposted by Ido Nir (INlab)
🌵Preprint alert 🌵
5y in the works & extremely proud of this one. Xin Cheng & @heikelindner.bsky.social established the eudicot leaf succulent Kalanchoë laxiflora as a dev model.
Like in grasses, MUTE makes Kalanchoë’s stomatal subsidiary cells! 1/n
www.biorxiv.org/content/10.1...
BSKY-tutorial 👇
5y in the works & extremely proud of this one. Xin Cheng & @heikelindner.bsky.social established the eudicot leaf succulent Kalanchoë laxiflora as a dev model.
Like in grasses, MUTE makes Kalanchoë’s stomatal subsidiary cells! 1/n
www.biorxiv.org/content/10.1...
BSKY-tutorial 👇
December 28, 2024 at 2:43 PM
🌵Preprint alert 🌵
5y in the works & extremely proud of this one. Xin Cheng & @heikelindner.bsky.social established the eudicot leaf succulent Kalanchoë laxiflora as a dev model.
Like in grasses, MUTE makes Kalanchoë’s stomatal subsidiary cells! 1/n
www.biorxiv.org/content/10.1...
BSKY-tutorial 👇
5y in the works & extremely proud of this one. Xin Cheng & @heikelindner.bsky.social established the eudicot leaf succulent Kalanchoë laxiflora as a dev model.
Like in grasses, MUTE makes Kalanchoë’s stomatal subsidiary cells! 1/n
www.biorxiv.org/content/10.1...
BSKY-tutorial 👇