Giannis Daras
giannisdaras.bsky.social
Giannis Daras
@giannisdaras.bsky.social
@MIT Postdoctoral Researcher.
Announcing Ambient Protein Diffusion, a state-of-the-art 17M-params generative model for protein structures.

Diversity improves by 91% and designability by 26% over the previous 200M SOTA model for long proteins.

The trick? Treat low pLDDT AlphaFold predictions as low-quality data.
July 8, 2025 at 4:05 AM
Reposted by Giannis Daras
Ambient Proteins: Training Diffusion Models on Low Quality Structures [new]
Trains diffusion models using low-confidence AlphaFold2 structures by adapting the diffusion objective based on corruption level.
July 6, 2025 at 5:59 AM
Reposted by Giannis Daras
New episode in this line of work from @giannisdaras.bsky.social et al. on training diffusion models with mostly bad/low-quality/corrupted data (+few high-quality samples). This time for proteins!

📄 Ambient diffusion Omni: arxiv.org/pdf/2506.10038
📄 Ambient Proteins: www.biorxiv.org/content/10.1...
July 7, 2025 at 7:43 PM
Reposted by Giannis Daras
We are releasing OpenThinker-32B, the best 32B reasoning model with open data. We match or outperform Deepseek-R1-32B (a closed data model) in reasoning benchmarks. Congrats to Negin and the whole Open Thoughts team.

github.com/open-thought...
February 12, 2025 at 8:11 PM
Reposted by Giannis Daras
o3 can't multiply beyond a few digits...

But I think multiplication, addition, maze solving and easy-to-hard generalization is actually solvable on standard transformers...

with recursive self-improvement

Below is the acc of a tiny model teaching itself how to add and multiply
February 13, 2025 at 1:33 PM
Well deserved!
I'm delighted to note that our paper InDI has been selected as one of two Outstanding Paper awardees by the Transactions on Machine Learning @tmlr-pub.bsky.social

We sincerely thank the expert reviewers, Action Editors, the Outstanding Paper Committee, and the Editors for this honor

1/3
December 20, 2024 at 2:20 PM
Reposted by Giannis Daras
Did Gauss invent the Gaussian?

- Laplace wrote down the integral first in 1783
- Gauss then described it in 1809 in the context of least-sq. for astronomical measurements
- Pearson & Fisher framed it as ‘normal’ density only in 1910

* Best part is: Gauss gave Laplace credit!
December 14, 2024 at 6:22 AM
Reposted by Giannis Daras
“There is nothing quite so useless, as doing with great efficiency, something that should not be done at all.”
December 4, 2024 at 7:12 AM
Reposted by Giannis Daras
“To write well is to think clearly.”
November 27, 2024 at 7:19 AM
Please reply to your ICLR rebuttals 🙏
November 24, 2024 at 3:49 PM