Daniel Osorio
@dcosorioh.bsky.social
🇨🇴 Colombian | Single-Cell Transcriptomics | Gene Regulatory Networks | Data Mining | dosorio.github.io
Reposted by Daniel Osorio
Until now, patient-specific regulatory networks have mostly been studied in individual cancer types. In our latest BioRxiv pre-print, we took this to the next level, performing a large-scale, pan-cancer network analysis of patient-specific regulatory landscapes: www.biorxiv.org/content/10.1...
October 7, 2025 at 1:42 PM
Until now, patient-specific regulatory networks have mostly been studied in individual cancer types. In our latest BioRxiv pre-print, we took this to the next level, performing a large-scale, pan-cancer network analysis of patient-specific regulatory landscapes: www.biorxiv.org/content/10.1...
Reposted by Daniel Osorio
Happy to share the Biodiversity Cell Atlas white paper, out today in @nature.com. We look at the possibilities, challenges, and potential impacts of molecularly mapping cells across the tree of life.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
September 24, 2025 at 3:12 PM
Happy to share the Biodiversity Cell Atlas white paper, out today in @nature.com. We look at the possibilities, challenges, and potential impacts of molecularly mapping cells across the tree of life.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Daniel Osorio
Very excited to announce that the single cell/nuc. RNA/ATAC/multi-ome resource from ENCODE4 is now officially public. This includes raw data, processed data, annotations and pseudobulk products. Covers many human & mouse tissues. 1/
www.encodeproject.org/single-cell/...
www.encodeproject.org/single-cell/...
Single cell – ENCODEHomo sapiens clickable body map
www.encodeproject.org
January 7, 2025 at 9:29 PM
Very excited to announce that the single cell/nuc. RNA/ATAC/multi-ome resource from ENCODE4 is now officially public. This includes raw data, processed data, annotations and pseudobulk products. Covers many human & mouse tissues. 1/
www.encodeproject.org/single-cell/...
www.encodeproject.org/single-cell/...
Reposted by Daniel Osorio
We want to make JASPAR even better for our users!
Please share your experience and ideas to help us enhance the database by taking a quick survey at nettskjema.no/a/467839.
Your insights make a difference! Thank you so much for your participation.
Please share your experience and ideas to help us enhance the database by taking a quick survey at nettskjema.no/a/467839.
Your insights make a difference! Thank you so much for your participation.
December 4, 2024 at 3:54 PM
We want to make JASPAR even better for our users!
Please share your experience and ideas to help us enhance the database by taking a quick survey at nettskjema.no/a/467839.
Your insights make a difference! Thank you so much for your participation.
Please share your experience and ideas to help us enhance the database by taking a quick survey at nettskjema.no/a/467839.
Your insights make a difference! Thank you so much for your participation.
15 versions of 10x Genomics Cell Ranger, 15 different results—Consistency in single-cell analysis is still a work in progress biorxiv.org/cgi/content/...
Impacts of Cell Ranger versions on Chromium gene expression data
In droplet-based Chromium single cell gene expression data by the 10x Genomics platform, cell barcode calling by Cell Ranger (CR) is a standard pipeline. However, no systematic evaluation of the impac...
biorxiv.org
November 18, 2024 at 7:32 PM
15 versions of 10x Genomics Cell Ranger, 15 different results—Consistency in single-cell analysis is still a work in progress biorxiv.org/cgi/content/...