Dr. Caleb Stoltzfus
@cstoltzfus.com
Optics | Microscopy | Physics | Image Analysis | Anything with lasers and data science
This workflow is very nice for organoids, where you want to take your time to pick and choose which organoids you re-image at sub-cellular resolution.
March 21, 2025 at 4:10 PM
This workflow is very nice for organoids, where you want to take your time to pick and choose which organoids you re-image at sub-cellular resolution.
I like the 3Di from Alpenglow Biosciences. It makes it easy to load 10 brains to scans at a time and has simultaneous high and low resolution imaging paths. www.alpenglowbiosciences.com/aurora-3d-sp... Disclaimer: they sign my paychecks
3D Tissue Imaging — Alpenglow Biosciences
Alpenglow is pioneering a new frontier in digital 3D spatial biology, integrating proprietary 3D imaging technology with cloud computing and AI-powered analysis. This high-throughput, digital approach...
www.alpenglowbiosciences.com
December 6, 2024 at 8:36 PM
I like the 3Di from Alpenglow Biosciences. It makes it easy to load 10 brains to scans at a time and has simultaneous high and low resolution imaging paths. www.alpenglowbiosciences.com/aurora-3d-sp... Disclaimer: they sign my paychecks
I teach a lot less on the industry side now, but I still rely on resources from ecology for helping new engineers/data scientists with spatial analysis. We use mostly python, CytoMAP, and a little R. Every once in a while we use Aivia as well.
November 29, 2024 at 4:18 PM
I teach a lot less on the industry side now, but I still rely on resources from ecology for helping new engineers/data scientists with spatial analysis. We use mostly python, CytoMAP, and a little R. Every once in a while we use Aivia as well.
For commercial software we use Aivia or Imaris, which both have free versions if you are only rendering the images. We use Napari for viewing data when we are doing custom analysis in python. The image analysis forum, forum.image.sc, is a great resource for getting started
Image.sc Forum
Scientific Community Image Forum is a discussion forum for scientific image software sponsored by the Center for Open Bioimage Analysis (COBA).
forum.image.sc
November 27, 2024 at 5:08 PM
For commercial software we use Aivia or Imaris, which both have free versions if you are only rendering the images. We use Napari for viewing data when we are doing custom analysis in python. The image analysis forum, forum.image.sc, is a great resource for getting started
Very cool work! I really like the videos showing off the segmentation
November 27, 2024 at 4:46 PM
Very cool work! I really like the videos showing off the segmentation