Gautam Shirsekar
@coevolution.bsky.social
Plant pathologist | Genomics | Coevolution | Wild plant pathosystems | Weigelworld, Max Planck Institute for Biology | Asst. Prof. at the University of Tennessee, Knoxville (EPP)| www.coevolutionlab.org
@annaliisalaine.bsky.social
Does this look familiar to you? From Cherokee National Forest
Does this look familiar to you? From Cherokee National Forest
September 16, 2025 at 3:58 PM
@annaliisalaine.bsky.social
Does this look familiar to you? From Cherokee National Forest
Does this look familiar to you? From Cherokee National Forest
..... these alleles have arrived there following many ways and will continue their evolutionary journey in natural pathosystems. This research was intellectually stimulating and rewarding experience for all of us. Check it out in @cp-cellhostmicrobe.bsky.social latest issue........
August 14, 2025 at 9:13 PM
..... these alleles have arrived there following many ways and will continue their evolutionary journey in natural pathosystems. This research was intellectually stimulating and rewarding experience for all of us. Check it out in @cp-cellhostmicrobe.bsky.social latest issue........
May 12, 2025 at 10:08 PM
In the Smokies, on a wild grape hunt
May 5, 2025 at 1:04 AM
In the Smokies, on a wild grape hunt
4/6 We constructed a pangenome graph with #pggb
@erikg.bsky.social to crawl along the regions of the genomes where NLRs or pieces of NLRs are found at least in 1 accession UNTIL we found common (syntenic) anchors bordering those regions in all the accessions --> "NLR neighborhood"
@erikg.bsky.social to crawl along the regions of the genomes where NLRs or pieces of NLRs are found at least in 1 accession UNTIL we found common (syntenic) anchors bordering those regions in all the accessions --> "NLR neighborhood"
September 2, 2024 at 10:13 PM
4/6 We constructed a pangenome graph with #pggb
@erikg.bsky.social to crawl along the regions of the genomes where NLRs or pieces of NLRs are found at least in 1 accession UNTIL we found common (syntenic) anchors bordering those regions in all the accessions --> "NLR neighborhood"
@erikg.bsky.social to crawl along the regions of the genomes where NLRs or pieces of NLRs are found at least in 1 accession UNTIL we found common (syntenic) anchors bordering those regions in all the accessions --> "NLR neighborhood"
2/6 We assembled 17 diverse *A. thaliana* (Ath) genomes using @pacbio.bsky.social #CCS and annotated them using
#isoseq reads that were obtained by challenging these accessions with three different Hyaloperonospora arabidopsidis (Har) strains.
#isoseq reads that were obtained by challenging these accessions with three different Hyaloperonospora arabidopsidis (Har) strains.
September 2, 2024 at 10:10 PM
2/6 We assembled 17 diverse *A. thaliana* (Ath) genomes using @pacbio.bsky.social #CCS and annotated them using
#isoseq reads that were obtained by challenging these accessions with three different Hyaloperonospora arabidopsidis (Har) strains.
#isoseq reads that were obtained by challenging these accessions with three different Hyaloperonospora arabidopsidis (Har) strains.
Wild Flower Festival, Frozen Head State Park, #TN #statepark
#TNPS, Tennessee Native Plant Society #naturalist
#TNPS, Tennessee Native Plant Society #naturalist
April 15, 2024 at 12:48 AM
Wild Flower Festival, Frozen Head State Park, #TN #statepark
#TNPS, Tennessee Native Plant Society #naturalist
#TNPS, Tennessee Native Plant Society #naturalist
Wild Flower Festival, Frozen Head State Park, #TN #statepark
#TNPS, Tennessee Native Plant Society #naturalist
#TNPS, Tennessee Native Plant Society #naturalist
April 15, 2024 at 12:47 AM
Wild Flower Festival, Frozen Head State Park, #TN #statepark
#TNPS, Tennessee Native Plant Society #naturalist
#TNPS, Tennessee Native Plant Society #naturalist
Wild Flower Festival, Frozen Head State Park, #TN #statepark
#TNPS, Tennessee Native Plant Society #naturalist
#TNPS, Tennessee Native Plant Society #naturalist
April 15, 2024 at 12:46 AM
Wild Flower Festival, Frozen Head State Park, #TN #statepark
#TNPS, Tennessee Native Plant Society #naturalist
#TNPS, Tennessee Native Plant Society #naturalist