Carson Stacy
@clstacy.bsky.social
Bioinformatics | Pangenomics | Chronically Curious. PhD candidate in Cell & Molecular Biology. M.S. Statistics and Analytics. UARK.
Opinions my own.
Opinions my own.
Reposted by Carson Stacy
Research @UArkansas identifies diet driven differences in how canary immune systems respond to infection while revealing how a protein diet primes the birds to resist infection @uarkansas.bsky.social @sauerscientist.bsky.social @clstacy.bsky.social
news.uark.edu/articles/786...
news.uark.edu/articles/786...
Study Finds High Protein Diet Improves Birds' Ability to Tolerate Infection
Research identifies diet-driven differences in how canary immune systems respond to infection while revealing how a protein diet primes the birds to resist infection.
news.uark.edu
June 25, 2025 at 2:10 PM
Research @UArkansas identifies diet driven differences in how canary immune systems respond to infection while revealing how a protein diet primes the birds to resist infection @uarkansas.bsky.social @sauerscientist.bsky.social @clstacy.bsky.social
news.uark.edu/articles/786...
news.uark.edu/articles/786...
Does anyone have insights into what is causing the recent downward trend in “t test” in PubMed citations? #stats
Source: esperr.github.io/pubmed-by-year
Source: esperr.github.io/pubmed-by-year
April 19, 2025 at 6:54 PM
Does anyone have insights into what is causing the recent downward trend in “t test” in PubMed citations? #stats
Source: esperr.github.io/pubmed-by-year
Source: esperr.github.io/pubmed-by-year
Reposted by Carson Stacy
Just as important as teaching how to use statistical tools in #science is teaching students why those tools work. Every #PhD graduate who uses #statistics in their field should be able to satisfactorily answer questions like the one below.
#edusky #academicChatter #statsky #phdchat #STEM
#edusky #academicChatter #statsky #phdchat #STEM
January 2, 2025 at 10:50 PM
Just as important as teaching how to use statistical tools in #science is teaching students why those tools work. Every #PhD graduate who uses #statistics in their field should be able to satisfactorily answer questions like the one below.
#edusky #academicChatter #statsky #phdchat #STEM
#edusky #academicChatter #statsky #phdchat #STEM
🧵 1/4 Have you ever wonder how a flavor in food gets labeled “natural” or “artificial”? It seems like an easy question: comes from nature? natural. Made in a lab? Artificial. Sounds good to me, but let’s dig deeper…
February 28, 2025 at 2:54 AM
🧵 1/4 Have you ever wonder how a flavor in food gets labeled “natural” or “artificial”? It seems like an easy question: comes from nature? natural. Made in a lab? Artificial. Sounds good to me, but let’s dig deeper…
I know plenty of folks in my grad school program who are self taught users of R for their research.
This open source course on R looks like a resource worth checking out: cs50.harvard.edu/r/2024/
This open source course on R looks like a resource worth checking out: cs50.harvard.edu/r/2024/
CS50's Introduction to Programming with R
An introduction to programming using a language called R.
cs50.harvard.edu
December 30, 2024 at 4:20 AM
I know plenty of folks in my grad school program who are self taught users of R for their research.
This open source course on R looks like a resource worth checking out: cs50.harvard.edu/r/2024/
This open source course on R looks like a resource worth checking out: cs50.harvard.edu/r/2024/
Reposted by Carson Stacy
SAVE THE DATES!!! Great news: useR 2025 will take place at Duke University, in Durham, NC, USA, August 8-10! More details to announced shortly, so stay tuned via duke-university-ocmd.read.axioshq.com/signup/user_...
www.linkedin.com/posts/user-c...
www.linkedin.com/posts/user-c...
useR! - The R User Conference on LinkedIn: #rstats #datascience #coding #rlanguage #statistics #computing #opensource…
SAVE THE DATES!!! Great news: useR 2025 will take place at Duke University, in Durham, NC, USA, August 8-10!
More details to announced shortly, so stay tuned…
www.linkedin.com
December 29, 2024 at 11:35 PM
SAVE THE DATES!!! Great news: useR 2025 will take place at Duke University, in Durham, NC, USA, August 8-10! More details to announced shortly, so stay tuned via duke-university-ocmd.read.axioshq.com/signup/user_...
www.linkedin.com/posts/user-c...
www.linkedin.com/posts/user-c...
I’m extra grateful for the grateful R package’s cite_packages function. 🧪 Such a nice resource for easily making science more reproducible: pakillo.github.io/grateful/
What package brings you joy this holiday season? 📦
What package brings you joy this holiday season? 📦
Facilitate Citation of R Packages
Facilitates the citation of R packages used in analysis projects. Scans project for packages used, gets their citations, and produces a document with citations in the preferred bibliography format, re...
pakillo.github.io
December 20, 2024 at 5:16 PM
I’m extra grateful for the grateful R package’s cite_packages function. 🧪 Such a nice resource for easily making science more reproducible: pakillo.github.io/grateful/
What package brings you joy this holiday season? 📦
What package brings you joy this holiday season? 📦
Reposted by Carson Stacy
@jkpritch.bsky.social
Looks fascinating.
Is there a bluesky thread about this somewhere?
"We find that GWAS prioritize genes near trait-specific variants, while burden tests prioritize trait-specific genes."
Looks fascinating.
Is there a bluesky thread about this somewhere?
"We find that GWAS prioritize genes near trait-specific variants, while burden tests prioritize trait-specific genes."
Specificity, length, and luck: How genes are prioritized by rare and common variant association studies https://www.biorxiv.org/content/10.1101/2024.12.12.628073v1
December 16, 2024 at 11:24 AM
@jkpritch.bsky.social
Looks fascinating.
Is there a bluesky thread about this somewhere?
"We find that GWAS prioritize genes near trait-specific variants, while burden tests prioritize trait-specific genes."
Looks fascinating.
Is there a bluesky thread about this somewhere?
"We find that GWAS prioritize genes near trait-specific variants, while burden tests prioritize trait-specific genes."
Delighted to share a hobby project I’ve been working on: learning the Sinhala alphabet 🇱🇰
I made a free simple web-based letter learning game for myself, and want to share for others to enjoy!
clstacy.github.io/sinhala/
#LanguageLearning #Sinhala #SriLanka
I made a free simple web-based letter learning game for myself, and want to share for others to enjoy!
clstacy.github.io/sinhala/
#LanguageLearning #Sinhala #SriLanka
December 15, 2024 at 10:58 PM
Delighted to share a hobby project I’ve been working on: learning the Sinhala alphabet 🇱🇰
I made a free simple web-based letter learning game for myself, and want to share for others to enjoy!
clstacy.github.io/sinhala/
#LanguageLearning #Sinhala #SriLanka
I made a free simple web-based letter learning game for myself, and want to share for others to enjoy!
clstacy.github.io/sinhala/
#LanguageLearning #Sinhala #SriLanka
Reposted by Carson Stacy
Delighted to share new work from our lab:
MultiPerturb-seq 🎛️ ❌ ↕️
Over the last few years, we've been combining CRISPR screens with multimodal readouts of gene expression (RNA) and chromatin accessibility (DNA). In this study, we bring those together within the same cells.
MultiPerturb-seq 🎛️ ❌ ↕️
Over the last few years, we've been combining CRISPR screens with multimodal readouts of gene expression (RNA) and chromatin accessibility (DNA). In this study, we bring those together within the same cells.
Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling go.nature.com/4hXER5O
Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling - Nature Biotechnology
MultiPerturb-seq profiles gene expression and chromatin accessibility in single-cell pooled CRISPR screen.
go.nature.com
November 26, 2024 at 1:42 PM
Delighted to share new work from our lab:
MultiPerturb-seq 🎛️ ❌ ↕️
Over the last few years, we've been combining CRISPR screens with multimodal readouts of gene expression (RNA) and chromatin accessibility (DNA). In this study, we bring those together within the same cells.
MultiPerturb-seq 🎛️ ❌ ↕️
Over the last few years, we've been combining CRISPR screens with multimodal readouts of gene expression (RNA) and chromatin accessibility (DNA). In this study, we bring those together within the same cells.