Comunidad de Desarrolladores de Software en Bioinformática
@cdsbmexico.bsky.social
🇲🇽 #RMB node: Community of Bioinformatics Software Developers #rstats @Bioconductor.bsky.social #bioinformatics
Admins @lcolladotor.bsky.social @areyesq.bsky.social @nnb_unam
Admins @lcolladotor.bsky.social @areyesq.bsky.social @nnb_unam
Pinned
We run weeklong workshops about #RStats and @bioconductor.bsky.social 1-2 times per year with our #RMB and #NNB-UNAM partners
The rest of the year we repost content from our community members. Find them here ⬇️
#RStatsES
go.bsky.app/5bWBN5V
The rest of the year we repost content from our community members. Find them here ⬇️
#RStatsES
go.bsky.app/5bWBN5V
Cynthia @cynthiasc.bsky.social pasó de alumna de un curso de la CDSB a trabajar con uno de nuestros co-fundadores por 3 años en EEUU. Ahora Cynthia está de regreso en México 🇲🇽 y disponible para dar cursos, colaborar, proyectos como consultora, y mucho más
lcolladotor.github.io/es/authors/c...
lcolladotor.github.io/es/authors/c...
December 18, 2025 at 3:00 PM
Cynthia @cynthiasc.bsky.social pasó de alumna de un curso de la CDSB a trabajar con uno de nuestros co-fundadores por 3 años en EEUU. Ahora Cynthia está de regreso en México 🇲🇽 y disponible para dar cursos, colaborar, proyectos como consultora, y mucho más
lcolladotor.github.io/es/authors/c...
lcolladotor.github.io/es/authors/c...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Hot take: ggplot2 is better than any plotting option available in Python-- but I discuss a couple options in Python at an R Stats Club session @libdrstats.bsky.social linked below. I personally use plotnine, since it's essentially a port of ggplot2 for Python.
youtu.be/xK9UNcOfjnI
youtu.be/xK9UNcOfjnI
[2025-07-18] Plots in Python with seaborn and plotnine
YouTube video by Leonardo Collado Torres
youtu.be
November 13, 2025 at 3:02 PM
Hot take: ggplot2 is better than any plotting option available in Python-- but I discuss a couple options in Python at an R Stats Club session @libdrstats.bsky.social linked below. I personally use plotnine, since it's essentially a port of ggplot2 for Python.
youtu.be/xK9UNcOfjnI
youtu.be/xK9UNcOfjnI
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Happy to share that our paper characterizing PrL dynamics during sustained attention is finally out. This work was a collaboration between the @martinowk.bsky.social and Greg Carr groups at @lieberinstitute.bsky.social . www.nature.com/articles/s41...
#Calicumimaging #miniscopes #rCPT #PrL
#Calicumimaging #miniscopes #rCPT #PrL
Patterns of neural activity in prelimbic cortex neurons correlate with attentional behavior in the rodent continuous performance test - Translational Psychiatry
Translational Psychiatry - Patterns of neural activity in prelimbic cortex neurons correlate with attentional behavior in the rodent continuous performance test
www.nature.com
November 7, 2025 at 6:42 PM
Happy to share that our paper characterizing PrL dynamics during sustained attention is finally out. This work was a collaboration between the @martinowk.bsky.social and Greg Carr groups at @lieberinstitute.bsky.social . www.nature.com/articles/s41...
#Calicumimaging #miniscopes #rCPT #PrL
#Calicumimaging #miniscopes #rCPT #PrL
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
I just completed my first radio 📻 interview ^_^
You'll be able to listen to it next Friday or so at www.iheart.com/podcast/269-.... Thanks Clau from iHeartRadio Miami's "Estamos Contigo" podcast for reaching out!
I'll be talking in Spanish about our recent #HabenulaLIBD 📜
bsky.app/profile/lcol...
You'll be able to listen to it next Friday or so at www.iheart.com/podcast/269-.... Thanks Clau from iHeartRadio Miami's "Estamos Contigo" podcast for reaching out!
I'll be talking in Spanish about our recent #HabenulaLIBD 📜
bsky.app/profile/lcol...
November 7, 2025 at 3:58 PM
I just completed my first radio 📻 interview ^_^
You'll be able to listen to it next Friday or so at www.iheart.com/podcast/269-.... Thanks Clau from iHeartRadio Miami's "Estamos Contigo" podcast for reaching out!
I'll be talking in Spanish about our recent #HabenulaLIBD 📜
bsky.app/profile/lcol...
You'll be able to listen to it next Friday or so at www.iheart.com/podcast/269-.... Thanks Clau from iHeartRadio Miami's "Estamos Contigo" podcast for reaching out!
I'll be talking in Spanish about our recent #HabenulaLIBD 📜
bsky.app/profile/lcol...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Para preparamos para los carteles Alberto Issac Aguilar Hernández de la UAEM nos plática de como diferenciar entre tipos de dinámicas determinists y estocásticas
#RedMexBioMate
#RedMexBioMate
November 5, 2025 at 9:17 PM
Para preparamos para los carteles Alberto Issac Aguilar Hernández de la UAEM nos plática de como diferenciar entre tipos de dinámicas determinists y estocásticas
#RedMexBioMate
#RedMexBioMate
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Acá va en español 🇲🇽
--- o ---
"¡Estamos orgullosos de anunciar que nuestro artículo ‘Análisis Transcriptómico de la Habénula Humana en Esquizofrenia’ es el artículo de portada de la edición de noviembre del American Journal of Psychiatry!" 🧠 #HabenulaLIBD #snRNAseq #Habénula doi.org/10.1176/appi...
--- o ---
"¡Estamos orgullosos de anunciar que nuestro artículo ‘Análisis Transcriptómico de la Habénula Humana en Esquizofrenia’ es el artículo de portada de la edición de noviembre del American Journal of Psychiatry!" 🧠 #HabenulaLIBD #snRNAseq #Habénula doi.org/10.1176/appi...
November 5, 2025 at 11:47 PM
Acá va en español 🇲🇽
--- o ---
"¡Estamos orgullosos de anunciar que nuestro artículo ‘Análisis Transcriptómico de la Habénula Humana en Esquizofrenia’ es el artículo de portada de la edición de noviembre del American Journal of Psychiatry!" 🧠 #HabenulaLIBD #snRNAseq #Habénula doi.org/10.1176/appi...
--- o ---
"¡Estamos orgullosos de anunciar que nuestro artículo ‘Análisis Transcriptómico de la Habénula Humana en Esquizofrenia’ es el artículo de portada de la edición de noviembre del American Journal of Psychiatry!" 🧠 #HabenulaLIBD #snRNAseq #Habénula doi.org/10.1176/appi...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Excited to share that the second project from my time at @lieberinstitute.bsky.social with @lcolladotor.bsky.social is now published! This was such a rewarding collaboration to be part of. 💡🧠
Huge congrats to @lahuuki.bsky.social and all co-authors!
Huge congrats to @lahuuki.bsky.social and all co-authors!
Proud to announce our paper ‘Transcriptomic Analysis of the Human Habenula in Schizophrenia’ from @lieberinstitute.bsky.social is the cover article for the November issue of the American Journal of Psychiatry! 🧠 #HabenulaLIBD #snRNAseq #Habenula doi.org/10.1176/appi...
Transcriptomic Analysis of the Human Habenula in Schizophrenia | American Journal of Psychiatry
Objective: The objective of this study was to define the molecular neuroanatomy of the human habenula (Hb) and identify transcriptomic differences between brains of individuals with schizophrenia and ...
doi.org
November 5, 2025 at 4:58 PM
Excited to share that the second project from my time at @lieberinstitute.bsky.social with @lcolladotor.bsky.social is now published! This was such a rewarding collaboration to be part of. 💡🧠
Huge congrats to @lahuuki.bsky.social and all co-authors!
Huge congrats to @lahuuki.bsky.social and all co-authors!
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
¡Hola! 👋 Avances en nuestra investigación sobre la habenula humana, clave en motivación y estrés.
Usamos single-cell, epigenomics y spatial data para estudiarla.
Presentado en el 2025 Epigenomics Sciences Symposium (JHU). 🧠✨
#SingleCell #Epigenomics #LIBD
Usamos single-cell, epigenomics y spatial data para estudiarla.
Presentado en el 2025 Epigenomics Sciences Symposium (JHU). 🧠✨
#SingleCell #Epigenomics #LIBD
May 5, 2025 at 3:30 AM
¡Hola! 👋 Avances en nuestra investigación sobre la habenula humana, clave en motivación y estrés.
Usamos single-cell, epigenomics y spatial data para estudiarla.
Presentado en el 2025 Epigenomics Sciences Symposium (JHU). 🧠✨
#SingleCell #Epigenomics #LIBD
Usamos single-cell, epigenomics y spatial data para estudiarla.
Presentado en el 2025 Epigenomics Sciences Symposium (JHU). 🧠✨
#SingleCell #Epigenomics #LIBD
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
We have a new preprint out! Led by brilliant PhD student @estefvazquez.bsky.social. here we investigate through transcriptomics and proteomics the microenvironment of ulcerated #acral #melanoma 👇🏾
The microenvironment of ulcerated acral melanoma is characterised by an inflammatory milieu and an enhanced humoral immune response https://www.medrxiv.org/content/10.1101/2025.05.05.25325616v1
May 8, 2025 at 6:34 AM
We have a new preprint out! Led by brilliant PhD student @estefvazquez.bsky.social. here we investigate through transcriptomics and proteomics the microenvironment of ulcerated #acral #melanoma 👇🏾
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Our New perspective explores breakthroughs & challenges in regulatory & systems genomics: from cis-regulatory code & 3D chromatin to spatial omics & AI models.
🔗 doi.org/10.1093/bioa...
#Genomics #Bioinformatics #RegulatoryGenomics
🔗 doi.org/10.1093/bioa...
#Genomics #Bioinformatics #RegulatoryGenomics
Perspective on recent developments and challenges in regulatory and systems genomics
Abstract. Predicting how genetic variation affects phenotypic outcomes at the organismal, cellular, and molecular levels requires deciphering the cis-regul
doi.org
May 13, 2025 at 4:59 PM
Our New perspective explores breakthroughs & challenges in regulatory & systems genomics: from cis-regulatory code & 3D chromatin to spatial omics & AI models.
🔗 doi.org/10.1093/bioa...
#Genomics #Bioinformatics #RegulatoryGenomics
🔗 doi.org/10.1093/bioa...
#Genomics #Bioinformatics #RegulatoryGenomics
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
HVTN 25th Anniversary:
The journey to an HIV vaccine 💪🏼
Full movie of this incredible 25yr effort 👇🏼
www.helpendhiv.org/25-anniversa...
The journey to an HIV vaccine 💪🏼
Full movie of this incredible 25yr effort 👇🏼
www.helpendhiv.org/25-anniversa...
25 Anniversary - HelpEndHIV
https://vimeo.com/1080978050
www.helpendhiv.org
May 16, 2025 at 4:57 PM
HVTN 25th Anniversary:
The journey to an HIV vaccine 💪🏼
Full movie of this incredible 25yr effort 👇🏼
www.helpendhiv.org/25-anniversa...
The journey to an HIV vaccine 💪🏼
Full movie of this incredible 25yr effort 👇🏼
www.helpendhiv.org/25-anniversa...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Massive DNA sequencing effort reveals how colonization shaped Brazil’s genetic diversity. My new story in @science.org. www.science.org/content/arti...
Massive DNA sequencing effort reveals how colonization shaped Brazil’s genetic diversity
New study identifies thousands of new variants related to diseases
www.science.org
May 16, 2025 at 6:18 PM
Massive DNA sequencing effort reveals how colonization shaped Brazil’s genetic diversity. My new story in @science.org. www.science.org/content/arti...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Today, I joined the @bioinfoedsummit.bsky.social, discussing: #Bioinformatics in 🇲🇽: Addressing Challenges in Education for Tomorrow’s Scientists
🔑 takeaways: focus on data integration + interpretation, strengthen local + international networks & create jobs outside of academia. 🙏 for the invite!
🔑 takeaways: focus on data integration + interpretation, strengthen local + international networks & create jobs outside of academia. 🙏 for the invite!
May 23, 2025 at 12:23 AM
Today, I joined the @bioinfoedsummit.bsky.social, discussing: #Bioinformatics in 🇲🇽: Addressing Challenges in Education for Tomorrow’s Scientists
🔑 takeaways: focus on data integration + interpretation, strengthen local + international networks & create jobs outside of academia. 🙏 for the invite!
🔑 takeaways: focus on data integration + interpretation, strengthen local + international networks & create jobs outside of academia. 🙏 for the invite!
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
This paper was an exciting culmination of a lots of exploration with #deconvolution ! Check-out my blog post on this work for the TL;DR version: lahuuki.github.io/posts/2025-0...
Deconvolution Benchmark: TL;DR – Louise A. Huuki-Myers
A high level overview of the Deconvolution Benchmark project, now published in Genome Biology!
lahuuki.github.io
April 11, 2025 at 2:35 PM
This paper was an exciting culmination of a lots of exploration with #deconvolution ! Check-out my blog post on this work for the TL;DR version: lahuuki.github.io/posts/2025-0...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
We also propose and evaluate a new method for selecting cell type specific #markergenes for deconvolution: #MeanRatio implemented in #DeconvoBuddies
@bioconductor.bsky.social #rstats
🛠️ research.libd.org/DeconvoBuddi...
@bioconductor.bsky.social #rstats
🛠️ research.libd.org/DeconvoBuddi...
April 11, 2025 at 2:35 PM
We also propose and evaluate a new method for selecting cell type specific #markergenes for deconvolution: #MeanRatio implemented in #DeconvoBuddies
@bioconductor.bsky.social #rstats
🛠️ research.libd.org/DeconvoBuddi...
@bioconductor.bsky.social #rstats
🛠️ research.libd.org/DeconvoBuddi...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Hey #deconvolution fans! 👀 We’ve got an exciting new publication for you: a benchmark of 6 popular deconvolution methods on a multimodal human brain #DLPFC dataset 🧠🧬
Now out in Genome Biology: doi.org/10.1186/s130...
@lieberinstitute.bsky.social @jhubiostat.bsky.social
Now out in Genome Biology: doi.org/10.1186/s130...
@lieberinstitute.bsky.social @jhubiostat.bsky.social
Benchmark of cellular deconvolution methods using a multi-assay dataset from postmortem human prefrontal cortex - Genome Biology
Cellular deconvolution of bulk RNA-sequencing data using single cell/nuclei RNA-seq reference data is an important strategy for estimating cell type composition in heterogeneous tissues, such as the h...
doi.org
April 11, 2025 at 2:35 PM
Hey #deconvolution fans! 👀 We’ve got an exciting new publication for you: a benchmark of 6 popular deconvolution methods on a multimodal human brain #DLPFC dataset 🧠🧬
Now out in Genome Biology: doi.org/10.1186/s130...
@lieberinstitute.bsky.social @jhubiostat.bsky.social
Now out in Genome Biology: doi.org/10.1186/s130...
@lieberinstitute.bsky.social @jhubiostat.bsky.social
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
If you’re looking to gain hands-on training in the basics of mass spectrometry and proteomics bioinformatics, then this course is for you! Make sure you’ve submitted your application by 6 April: www.ebi.ac.uk/training/eve...
Some financial assistance is available - see the course website.
🧪🧶🧬🖥️
Some financial assistance is available - see the course website.
🧪🧶🧬🖥️
March 27, 2025 at 10:43 AM
If you’re looking to gain hands-on training in the basics of mass spectrometry and proteomics bioinformatics, then this course is for you! Make sure you’ve submitted your application by 6 April: www.ebi.ac.uk/training/eve...
Some financial assistance is available - see the course website.
🧪🧶🧬🖥️
Some financial assistance is available - see the course website.
🧪🧶🧬🖥️
¿Quieres que te paguen y te entrenen para desarrollar un paquete 📦 de #RStats por un año?
¿Quieres ser mentor?
Manda tu solicitud antes del 30 de abril. Es para gente de Latino América
ropensci.org/blog/2025/03...
¿Quieres ser mentor?
Manda tu solicitud antes del 30 de abril. Es para gente de Latino América
ropensci.org/blog/2025/03...
March 27, 2025 at 12:22 PM
¿Quieres que te paguen y te entrenen para desarrollar un paquete 📦 de #RStats por un año?
¿Quieres ser mentor?
Manda tu solicitud antes del 30 de abril. Es para gente de Latino América
ropensci.org/blog/2025/03...
¿Quieres ser mentor?
Manda tu solicitud antes del 30 de abril. Es para gente de Latino América
ropensci.org/blog/2025/03...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Hello Again #Bluesky Im officially over with the #DeadBlueBird. Ready to engage with all of you and all things Viral #LoveVirology🦠
February 21, 2025 at 4:10 AM
Hello Again #Bluesky Im officially over with the #DeadBlueBird. Ready to engage with all of you and all things Viral #LoveVirology🦠
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Come join us in Hinxton 🇬🇧 in June! We will be talking all omics about metabolic disease and cancer! 🤓📝
🌟 Contribute to therapeutic advances to treat metabolic disease
If you're working with #omics tools and technologies to gain deeper insights into #MetabolicDisease, we'd love you to present at #MetabolicMultiomics25
Submit your abstract by 18 March⏰
🗣️Join a stellar speaker line-up
📎bit.ly/3DF6vET
If you're working with #omics tools and technologies to gain deeper insights into #MetabolicDisease, we'd love you to present at #MetabolicMultiomics25
Submit your abstract by 18 March⏰
🗣️Join a stellar speaker line-up
📎bit.ly/3DF6vET
February 28, 2025 at 3:05 PM
Come join us in Hinxton 🇬🇧 in June! We will be talking all omics about metabolic disease and cancer! 🤓📝
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Happy to share some of my PhD results at UNAM CCG
! #Ambystoma #Chytridiomycosis #Amphibian #skinmicrobiome #Botrytiscinerea #genomemining #antifungal #axolotl
link.springer.com/article/10.1...
! #Ambystoma #Chytridiomycosis #Amphibian #skinmicrobiome #Botrytiscinerea #genomemining #antifungal #axolotl
link.springer.com/article/10.1...
Amphibian skin bacteria contain a wide repertoire of genes linked to their antifungal capacities - World Journal of Microbiology and Biotechnology
Emerging diseases caused by fungi are a serious threat to wildlife biodiversity. The widespread fungal pathogen Batrachochytrium dendrobatidis (Bd) has caused dramatic amphibian population declines an...
link.springer.com
February 28, 2025 at 5:39 PM
Happy to share some of my PhD results at UNAM CCG
! #Ambystoma #Chytridiomycosis #Amphibian #skinmicrobiome #Botrytiscinerea #genomemining #antifungal #axolotl
link.springer.com/article/10.1...
! #Ambystoma #Chytridiomycosis #Amphibian #skinmicrobiome #Botrytiscinerea #genomemining #antifungal #axolotl
link.springer.com/article/10.1...
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
👉 Sharing a talk of the molecular neuroanatomical map of the human prefrontal cortex. This study integrates Visium Spatial data with snRNA-seq to map cell types and interactions across spatial domains. Le
Watch here: youtu.be/EhP5-mhw29w
Slides on video
Explore: research.libd.org/spatialDLPFC/
Watch here: youtu.be/EhP5-mhw29w
Slides on video
Explore: research.libd.org/spatialDLPFC/
spatialDLPFC
research.libd.org
March 5, 2025 at 2:50 PM
👉 Sharing a talk of the molecular neuroanatomical map of the human prefrontal cortex. This study integrates Visium Spatial data with snRNA-seq to map cell types and interactions across spatial domains. Le
Watch here: youtu.be/EhP5-mhw29w
Slides on video
Explore: research.libd.org/spatialDLPFC/
Watch here: youtu.be/EhP5-mhw29w
Slides on video
Explore: research.libd.org/spatialDLPFC/
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Our Diversity is our strength! #StandUpFor Science-Seattle
March 7, 2025 at 10:17 PM
Our Diversity is our strength! #StandUpFor Science-Seattle
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
New blog post: "Teaching #omics #methods to #LCG-UNAM students"
Thanks for inviting me @vaalarias.bsky.social and Dr Constance Auvynet ^_^
Blog post is available in both English and Spanish 🇲🇽
#genomics #scRNAseq #Visium #spatialomics @10xgenomics.bsky.social
lcolladotor.github.io/2025/03/07/t...
Thanks for inviting me @vaalarias.bsky.social and Dr Constance Auvynet ^_^
Blog post is available in both English and Spanish 🇲🇽
#genomics #scRNAseq #Visium #spatialomics @10xgenomics.bsky.social
lcolladotor.github.io/2025/03/07/t...
Teaching omics methods to LCG-UNAM students | L. Collado-Torres
Notes from a second semester introductory class to the world of omics research techniques at LCG-UNAM. That is, my undergrad alma mater. Thank you for the invitation! Valentina Arias Ojeda is as teach...
lcolladotor.github.io
March 7, 2025 at 10:49 PM
New blog post: "Teaching #omics #methods to #LCG-UNAM students"
Thanks for inviting me @vaalarias.bsky.social and Dr Constance Auvynet ^_^
Blog post is available in both English and Spanish 🇲🇽
#genomics #scRNAseq #Visium #spatialomics @10xgenomics.bsky.social
lcolladotor.github.io/2025/03/07/t...
Thanks for inviting me @vaalarias.bsky.social and Dr Constance Auvynet ^_^
Blog post is available in both English and Spanish 🇲🇽
#genomics #scRNAseq #Visium #spatialomics @10xgenomics.bsky.social
lcolladotor.github.io/2025/03/07/t...