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cdsbmexico.bsky.social
Comunidad de Desarrolladores de Software en Bioinformática
@cdsbmexico.bsky.social
🇲🇽 #RMB node: Community of Bioinformatics Software Developers #rstats @Bioconductor.bsky.social #bioinformatics

Admins @lcolladotor.bsky.social @areyesq.bsky.social @nnb_unam
Pinned
We run weeklong workshops about #RStats and @bioconductor.bsky.social 1-2 times per year with our #RMB and #NNB-UNAM partners

The rest of the year we repost content from our community members. Find them here ⬇️

#RStatsES

go.bsky.app/5bWBN5V
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
lcolladotor.github.io/rnaseq_LCG-U... is looking ready for next week!

We'll have the most guest presenters ever this year with @meli-mq99.bsky.social @gabrielramirezv.bsky.social @mariagtac.bsky.social & @daiannaglez.bsky.social 🙌🏽

See you soon at LCG-UNAM! 🇲🇽

#RStats @bioconductor.bsky.social
February 3, 2026 at 5:21 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Last Friday, Irving Jair García López became the latest PhD graduate of the #RegRNALab. His work focused on characterising lncRNAs in response to light stress in Arabidopsis 🌓🌱 and was jointly advised by Stewart Gillmor.

Huge congratulations Dr García López!!! 🎉🎓
December 11, 2025 at 8:16 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
The #RegRNALab is now LEAF certified! LEAF, is an internationally recognised green lab accreditation that aims to build a culture of sustainable practice in laboratories around the 🌎♻️ We are currently just 🥉 but we have our eyes on🥇! Props to Billi Ilkovski & the whole team for getting this done!
December 11, 2025 at 8:22 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
I’m happy to share a preprint I contributed to, analyzing the evolutionary “fingerprints” of protein-coding genes in RNA viruses. Surface-exposed proteins from enveloped viruses show patterns consistent with relaxed purifying selection rather than adaptive evolution.
Evolutionary fingerprinting of protein-coding genes in RNA viruses https://www.biorxiv.org/content/10.64898/2025.12.05.692645v1
December 26, 2025 at 9:47 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Are you working on ancient plant DNA? 🌿

We are organising a symposium on Ancient plant genomics at #SMBE2026 in beautiful Copenhagen 🇩🇰

Join Nathan Wales, Shuya Zhang, Marcela Sandoval Velasco, me, and our fantastic speaker Logan Kistler from the Smithsonian Institution.

Help us spread the word!
January 6, 2026 at 7:18 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
I’ve just published {typeR}, a small R package that lets you simulate live typing. It prints code
To install:
devtools::install_github("fgazzelloni/typeR")

If you teach or demo R, I’d love your feedback on how it works for you. #rstats #rpackages
January 20, 2026 at 6:32 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Buscamos personas interesad@s en estudiar la biodiversidad de eucariontes con métodos basados en DNA ambiental #eDNA.
Consulta la convocatoria de maestría en ECOSUR (México): www.ecosur.mx/posgrado/con...
Para más información contacta a Dra. Eugenia Zarza: eugenia.zarza@ecosur.mx 🧪🌎🧬🐟🐜🪲🪱🍄🐭
January 21, 2026 at 10:13 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
So...a week ago I finally got my PhD (with honours 🥳).
It has been a wild ride & I'm so happy to finish it with such great commentaries & congratulations.
I'm beyond grateful for all that I've learnt so far & the people I've met.
And overall I'm SO excited for what's next to come 💜
January 22, 2026 at 12:46 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
New preprint led by Ellie Tong! Using phages targeting the inner core of LPS in PAO1, we found that when bacteria evolved resistance to one phage via genomic deletions, they became vulnerable to another revealing a resistance trade-off. #Microbiology #PhageTherapy
www.biorxiv.org/content/10.6...
www.biorxiv.org
January 22, 2026 at 10:18 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
New paper out! Gut microbiota in Mexican adolescents is shaped by BMI, diet, and socioeconomic status.
Obesity was linked to lower microbial diversity and higher Bacteroidetes and sugar-rich diets, and lower SES were associated with potential pathogens.
onlinelibrary.wiley.com/doi/10.1002/...
Gut Microbiota Composition in Adolescents From Mexico City, Associations With Nutritional and Socioeconomic Factors: Results From a Pilot Study
This study analyzed the gut microbiota composition of 95 adolescents and its relationship with body mass index, dietary habits, and socioeconomic status using 16S rRNA sequencing (V3-V4). The dominan...
onlinelibrary.wiley.com
January 23, 2026 at 2:48 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
I re-edited this 2020 video using Adobe Premier Pro's features for removing filler words, pauses, and text-based editing. In total it went down from 20:53 min to 12:41. I hope that you get to (re-)enjoy it ^_^.

@jennybryan.bsky.social

#RStats #reprex #reproducibility #JHPCE

youtu.be/LfUFxHFhXTE
[2020-04-03] How to ask for R help by creating a small reproducible example (edited on 2026-01-27)
YouTube video by Leonardo Collado Torres
youtu.be
January 27, 2026 at 5:00 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
[2025-10-16] What Makes a Good Data Visualization?

Here's a teaser video of @christinezhang.bsky.social's guest lecture for the "140.776 Statistical Computing" 💻 course that I instructed this year at @johnshopkinssph.bsky.social

Watch Christine's full guest lecture for free at youtu.be/SeLucCb05Dk
December 5, 2025 at 6:33 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
very sad news. Peer Bork was one of the leaders of our field, a wonderful scientist, and he's much too young to be gone. www.embl.org/news/embl-an...
In remembrance of Peer Bork  | EMBL
EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.
www.embl.org
January 16, 2026 at 6:33 PM
Cynthia @cynthiasc.bsky.social pasó de alumna de un curso de la CDSB a trabajar con uno de nuestros co-fundadores por 3 años en EEUU. Ahora Cynthia está de regreso en México 🇲🇽 y disponible para dar cursos, colaborar, proyectos como consultora, y mucho más

lcolladotor.github.io/es/authors/c...
December 18, 2025 at 3:00 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Hot take: ggplot2 is better than any plotting option available in Python-- but I discuss a couple options in Python at an R Stats Club session @libdrstats.bsky.social linked below. I personally use plotnine, since it's essentially a port of ggplot2 for Python.

youtu.be/xK9UNcOfjnI
[2025-07-18] Plots in Python with seaborn and plotnine
YouTube video by Leonardo Collado Torres
youtu.be
November 13, 2025 at 3:02 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Happy to share that our paper characterizing PrL dynamics during sustained attention is finally out. This work was a collaboration between the @martinowk.bsky.social and Greg Carr groups at @lieberinstitute.bsky.social . www.nature.com/articles/s41...

#Calicumimaging #miniscopes #rCPT #PrL
Patterns of neural activity in prelimbic cortex neurons correlate with attentional behavior in the rodent continuous performance test - Translational Psychiatry
Translational Psychiatry - Patterns of neural activity in prelimbic cortex neurons correlate with attentional behavior in the rodent continuous performance test
www.nature.com
November 7, 2025 at 6:42 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
I just completed my first radio 📻 interview ^_^

You'll be able to listen to it next Friday or so at www.iheart.com/podcast/269-.... Thanks Clau from iHeartRadio Miami's "Estamos Contigo" podcast for reaching out!

I'll be talking in Spanish about our recent #HabenulaLIBD 📜

bsky.app/profile/lcol...
November 7, 2025 at 3:58 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Para preparamos para los carteles Alberto Issac Aguilar Hernández de la UAEM nos plática de como diferenciar entre tipos de dinámicas determinists y estocásticas

#RedMexBioMate
November 5, 2025 at 9:17 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Acá va en español 🇲🇽
--- o ---

"¡Estamos orgullosos de anunciar que nuestro artículo ‘Análisis Transcriptómico de la Habénula Humana en Esquizofrenia’ es el artículo de portada de la edición de noviembre del American Journal of Psychiatry!" 🧠 #HabenulaLIBD #snRNAseq #Habénula doi.org/10.1176/appi...
November 5, 2025 at 11:47 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Excited to share that the second project from my time at @lieberinstitute.bsky.social with @lcolladotor.bsky.social is now published! This was such a rewarding collaboration to be part of. 💡🧠
Huge congrats to @lahuuki.bsky.social and all co-authors!
November 5, 2025 at 4:58 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
¡Hola! 👋 Avances en nuestra investigación sobre la habenula humana, clave en motivación y estrés.
Usamos single-cell, epigenomics y spatial data para estudiarla.
Presentado en el 2025 Epigenomics Sciences Symposium (JHU). 🧠✨
#SingleCell #Epigenomics #LIBD
May 5, 2025 at 3:30 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
We have a new preprint out! Led by brilliant PhD student @estefvazquez.bsky.social. here we investigate through transcriptomics and proteomics the microenvironment of ulcerated #acral #melanoma 👇🏾
The microenvironment of ulcerated acral melanoma is characterised by an inflammatory milieu and an enhanced humoral immune response https://www.medrxiv.org/content/10.1101/2025.05.05.25325616v1
May 8, 2025 at 6:34 AM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Our New perspective explores breakthroughs & challenges in regulatory & systems genomics: from cis-regulatory code & 3D chromatin to spatial omics & AI models.
🔗 doi.org/10.1093/bioa...
#Genomics #Bioinformatics #RegulatoryGenomics
Perspective on recent developments and challenges in regulatory and systems genomics
Abstract. Predicting how genetic variation affects phenotypic outcomes at the organismal, cellular, and molecular levels requires deciphering the cis-regul
doi.org
May 13, 2025 at 4:59 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
HVTN 25th Anniversary:
The journey to an HIV vaccine 💪🏼

Full movie of this incredible 25yr effort 👇🏼

www.helpendhiv.org/25-anniversa...
25 Anniversary - HelpEndHIV
https://vimeo.com/1080978050
www.helpendhiv.org
May 16, 2025 at 4:57 PM
Reposted by Comunidad de Desarrolladores de Software en Bioinformática
Massive DNA sequencing effort reveals how colonization shaped Brazil’s genetic diversity. My new story in @science.org. www.science.org/content/arti...
Massive DNA sequencing effort reveals how colonization shaped Brazil’s genetic diversity
New study identifies thousands of new variants related to diseases
www.science.org
May 16, 2025 at 6:18 PM