Elisabeth Bobkova
@bobez.bsky.social
PostDoc at Erb Lab, science policy enthusiast, scientific illustrator, metalhead. Yay to using ML, physics and molecular biology to engineer new synbio systems
Reposted by Elisabeth Bobkova
🚨 Fully funded PhD positions in #microbiology!
Join IMPRS Principles of Microbial Life in Marburg,Germany
🌱 Interdisciplinary research
🧬 World-class mentoring
🧪 State-of-the-art research infrastructure
🗓️ Apply until Jan 31, 2026
🔗 imprs-marburg.mpg.de/3197/JOIN-US
#PhDposition #WomenInSTEM
Join IMPRS Principles of Microbial Life in Marburg,Germany
🌱 Interdisciplinary research
🧬 World-class mentoring
🧪 State-of-the-art research infrastructure
🗓️ Apply until Jan 31, 2026
🔗 imprs-marburg.mpg.de/3197/JOIN-US
#PhDposition #WomenInSTEM
December 1, 2025 at 9:01 AM
🚨 Fully funded PhD positions in #microbiology!
Join IMPRS Principles of Microbial Life in Marburg,Germany
🌱 Interdisciplinary research
🧬 World-class mentoring
🧪 State-of-the-art research infrastructure
🗓️ Apply until Jan 31, 2026
🔗 imprs-marburg.mpg.de/3197/JOIN-US
#PhDposition #WomenInSTEM
Join IMPRS Principles of Microbial Life in Marburg,Germany
🌱 Interdisciplinary research
🧬 World-class mentoring
🧪 State-of-the-art research infrastructure
🗓️ Apply until Jan 31, 2026
🔗 imprs-marburg.mpg.de/3197/JOIN-US
#PhDposition #WomenInSTEM
Reposted by Elisabeth Bobkova
Very excited to finally share my PhD paper, about advancing #chloroplast #synbio through high-throughput plastome engineering of #Chlamydomonas.
Huge thanks to the whole team!
www.nature.com/articles/s41...
Huge thanks to the whole team!
www.nature.com/articles/s41...
November 3, 2025 at 4:26 PM
Very excited to finally share my PhD paper, about advancing #chloroplast #synbio through high-throughput plastome engineering of #Chlamydomonas.
Huge thanks to the whole team!
www.nature.com/articles/s41...
Huge thanks to the whole team!
www.nature.com/articles/s41...
Reposted by Elisabeth Bobkova
With this, the last bit of my PhD at @embl.org is finally out!
We developed salad (sparse all-atom denoising), a family of blazing fast protein structure diffusion models.
Paper: nature.com/articles/s42256-…
Code: github.com/mjendrusch/salad
Data: zenodo.org/records/14711580
1/🧵
We developed salad (sparse all-atom denoising), a family of blazing fast protein structure diffusion models.
Paper: nature.com/articles/s42256-…
Code: github.com/mjendrusch/salad
Data: zenodo.org/records/14711580
1/🧵
‘Salad’ – a new AI model from EMBL scientists – offers major improvements in synthetic protein design.
Salad is significantly faster than comparable methods, and designing proteins that don't exist in nature can have applications in many scientific fields.
www.nature.com/articles/s42...
Salad is significantly faster than comparable methods, and designing proteins that don't exist in nature can have applications in many scientific fields.
www.nature.com/articles/s42...
September 24, 2025 at 12:27 PM
With this, the last bit of my PhD at @embl.org is finally out!
We developed salad (sparse all-atom denoising), a family of blazing fast protein structure diffusion models.
Paper: nature.com/articles/s42256-…
Code: github.com/mjendrusch/salad
Data: zenodo.org/records/14711580
1/🧵
We developed salad (sparse all-atom denoising), a family of blazing fast protein structure diffusion models.
Paper: nature.com/articles/s42256-…
Code: github.com/mjendrusch/salad
Data: zenodo.org/records/14711580
1/🧵
Just submitted my PhD thesis. Feeling kinda empty now...
September 3, 2025 at 2:08 PM
Just submitted my PhD thesis. Feeling kinda empty now...
Reposted by Elisabeth Bobkova
Reposted by Elisabeth Bobkova
Excited to share a main project from my PhD, out now in
@naturecomms.bsky.social! 📝
We've designed and brought to life the “CORE cycle” – a new-to-nature pathway that provides a novel route for biological CO2 capture 🦠🌱
nature.com/articles/s41...
Take a look! Thread below... 🧵
@naturecomms.bsky.social! 📝
We've designed and brought to life the “CORE cycle” – a new-to-nature pathway that provides a novel route for biological CO2 capture 🦠🌱
nature.com/articles/s41...
Take a look! Thread below... 🧵
April 4, 2025 at 10:03 AM
Excited to share a main project from my PhD, out now in
@naturecomms.bsky.social! 📝
We've designed and brought to life the “CORE cycle” – a new-to-nature pathway that provides a novel route for biological CO2 capture 🦠🌱
nature.com/articles/s41...
Take a look! Thread below... 🧵
@naturecomms.bsky.social! 📝
We've designed and brought to life the “CORE cycle” – a new-to-nature pathway that provides a novel route for biological CO2 capture 🦠🌱
nature.com/articles/s41...
Take a look! Thread below... 🧵
Thrilled to have been part of the 76th Mosbacher Kolloquium! Huge thanks to @gbmev.bsky.social for organizing such an engaging conference! @anastasiagtz.bsky.so and I were excited to share our insights on differential transport across membranes, and we're truly honored to receive the poster award!
March 24, 2025 at 11:15 AM
Thrilled to have been part of the 76th Mosbacher Kolloquium! Huge thanks to @gbmev.bsky.social for organizing such an engaging conference! @anastasiagtz.bsky.so and I were excited to share our insights on differential transport across membranes, and we're truly honored to receive the poster award!
Reposted by Elisabeth Bobkova
Really happy to share that our work on constructing six glyoxylate / glycolate sensors covering a three order of magnitude concentration range is out now in Nature Communications ! 🔥
Read below to see how we developed the sensors and what they are good for 🥳.
www.nature.com/articles/s41...
Read below to see how we developed the sensors and what they are good for 🥳.
www.nature.com/articles/s41...
Computation-aided designs enable developing auxotrophic metabolic sensors for wide-range glyoxylate and glycolate detection - Nature Communications
Auxotrophic metabolic sensors (AMS) are vital for bioengineering but are often time-consuming to develop. Here, the authors present a workflow for designing versatile AMS, demonstrating their use for ...
www.nature.com
March 4, 2025 at 6:03 PM
Really happy to share that our work on constructing six glyoxylate / glycolate sensors covering a three order of magnitude concentration range is out now in Nature Communications ! 🔥
Read below to see how we developed the sensors and what they are good for 🥳.
www.nature.com/articles/s41...
Read below to see how we developed the sensors and what they are good for 🥳.
www.nature.com/articles/s41...
Reposted by Elisabeth Bobkova
Super excited to see my main PhD project finally out in @naturemicrobiol.bsky.social www.nature.com/articles/s41.... We show for the first time that a synthetic and engineered pathway can indeed exceed nature at one-carbon fixation.
One-carbon fixation via the synthetic reductive glycine pathway exceeds yield of the Calvin cycle - Nature Microbiology
An engineered one-carbon-fixation pathway increases biomass yields of Cupriavidus necator compared with the Calvin cycle and can support future, sustainable bio-based production.
www.nature.com
February 27, 2025 at 10:34 AM
Super excited to see my main PhD project finally out in @naturemicrobiol.bsky.social www.nature.com/articles/s41.... We show for the first time that a synthetic and engineered pathway can indeed exceed nature at one-carbon fixation.
Reposted by Elisabeth Bobkova
New protein ML preprint from my PhD project.
We describe salad (sparse all-atom denoising), a family of efficient protein structure diffusion models and show that it works well on a bunch of protein design task previously described in the literature.
Preprint: www.biorxiv.org/content/10.1...
(1/N)
We describe salad (sparse all-atom denoising), a family of efficient protein structure diffusion models and show that it works well on a bunch of protein design task previously described in the literature.
Preprint: www.biorxiv.org/content/10.1...
(1/N)
February 6, 2025 at 1:07 PM
New protein ML preprint from my PhD project.
We describe salad (sparse all-atom denoising), a family of efficient protein structure diffusion models and show that it works well on a bunch of protein design task previously described in the literature.
Preprint: www.biorxiv.org/content/10.1...
(1/N)
We describe salad (sparse all-atom denoising), a family of efficient protein structure diffusion models and show that it works well on a bunch of protein design task previously described in the literature.
Preprint: www.biorxiv.org/content/10.1...
(1/N)