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amahury.bsky.social
Complexity Cat 🐱
@amahury.bsky.social
Exciting stuff on complexity, theoretical biology, artificial intelligence, linguistics, neuroscience and their intersections.

#complexitycat

complexitycat.org
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A group of renowned #ALife researchers recently published a paper exploring open questions on the relationship between life and self-reference.

As usual, part of the literature addressing these “unresolved problems” was ignored.../1🤓

#complexitycat 🐈‍⬛

amahury.github.io/posts/time-a...
Review Open Questions about Time and Self-reference in Living Systems
Today I am going to review a synthesis written by a group of renowned researchers of artificial life, who have omitted a couple of important contributions that close the gap with what they have called...
amahury.github.io
Reposted by Complexity Cat 🐱
𝗜𝘀 𝘁𝗵𝗲 𝗯𝗿𝗮𝗶𝗻 𝗮 𝗰𝗼𝗺𝗽𝗹𝗲𝘅 𝗻𝗲𝘁𝘄𝗼𝗿𝗸?
In a sense yes, but does network science help us understand the brain as a complex system? Intriguing paper.
If anything the paper has 800+ refs!
#neuroskyence #complexsystems
doi.org/10.1016/j.pl...
November 10, 2025 at 6:14 PM
Reposted by Complexity Cat 🐱
📅 Mark your calendar!

Join us next Monday, Nov 17 at 11 AM ET, for our next seminar with Dr. Violeta Calleja Solanas (Doñana Biological Station) on time-varying ecological interactions.

See you all there!✨
November 10, 2025 at 5:37 PM
Reposted by Complexity Cat 🐱
"Cognition all the way down". Great to see this fine new paper from @robertchisciure.bsky.social & @drmichaellevin.bsky.social out now in Synthese - introducing a new metric to quantify biological intelligence as search efficiency in multidimensional problem spaces link.springer.com/article/10.1...
November 10, 2025 at 2:46 PM
Reposted by Complexity Cat 🐱
New Preprint: "Scaling laws in biological thermal performances" with a great team led by José Ignacio Arroyo and Amahury J. Lopez-Diaz, including Alejandro Maass, Pablo Marquet, Geoffrey West, and Christopher P. Kempes www.biorxiv.org/content/10.1...
Scaling laws in biological thermal performances
Understanding the extent to which genetic correlations change in response to environmental factors, such as temperature, is a poorly explored question, despite the importance of understanding how diff...
www.biorxiv.org
November 10, 2025 at 5:19 PM
Reposted by Complexity Cat 🐱
Scaling laws in biological thermal performances
Scaling laws in biological thermal performances
José Ignacio Arroyo, Amahury J. Lopez-Diaz, Alejandro Maass, Carlos Gershenson, Pablo Marquet, Geoffrey West, Christopher P. Kempes Understanding the extent to which genetic correlations change in response to environmental factors, such as temperature, is a poorly explored question, despite the importance of understanding how different processes will change with climate warming. Despite correlations between thermal performance traits having been reported in the literature for a few taxa and performance tasks, such as population growth rate, a comprehensive global analysis of the entire tree of life and multiple performance tasks remains an open challenge. To advance in this open question, we compile a database of 1,300 thermal response curves, encompassing 38 variable types related to individuals’ performance (including per capita population growth rate, photosynthetic rate, among others) and 1,125 different species, ranging from viruses to mammals, encompassing all major lineages of the tree of life. Our analysis reveals that among all possible relationships between traits and optimal performance, four traits form a line with a high goodness-of-fit, while the remaining traits exhibit a polygonal pattern, either a triangle or a tetrahedron. We derive a thermodynamic framework that explains the relationships described by a curve or line (as opposed to a surface or polygon), highlighting the linear relationship between maximum and minimum temperatures, as well as between maximum and optimum temperatures. We also discuss other generic trait evolution models, which could account for the other significant sublinear relationships, as well as the more general model, Pareto optimality theory, which could account for relationships in the form of lines or polygons. Our theoretical framework and empirical evidence suggest that, based on a single data point (e.g., minimum temperature), all critical temperature limits and maximum performance boundaries can be predicted using the estimated parameter from this study. Our results reveal universal scaling relationships in thermal performance, which could be useful for predicting changes in performance under scenarios of climate warming. Read the full article at: www.biorxiv.org See Also: A database of biological thermal performances
sco.lt
November 10, 2025 at 4:59 PM
#complexitycat is releasing a new domain: now you can enjoy our content at complexitycat.org 😸

Don't forget to read our latest essay on self-reference and living systems. Soon we'll offer another review of a popular semantic information metric. Can you guess what it is?🫣
November 10, 2025 at 3:02 PM
Reposted by Complexity Cat 🐱
Are you a scientist?

Is your research cool?

Do people not adequately appreciate how cool your research is?

I'm looking for researchers to feature in Q&A-style interviews on my blog and would love to hear from (or about — embarrass your friends!) scientists interested in sharing their work. 🧪
November 10, 2025 at 11:37 AM
Reposted by Complexity Cat 🐱
📢The 9th edition of the Summer School “Digital Tools for Humanists” will be held in Pisa from May 25 to May 30 2026, both in presence and online: digitaltools.labcd.unipi.it
Registration fee: 500 Euros.
DEADLINE: 15/04/2026

(Photo by Andrae Ricketts on Unsplash)
November 9, 2025 at 6:29 PM
Reposted by Complexity Cat 🐱
By replying to Elise below, we could generate a nice thread.
Hey complexity and complexity-adjacent people:

What are some of your favorite pop-sci books? Are there any you've had your eye on but haven't had a chance to read yet?

They can be new or old. I'd just love to know what y'all are reading!
November 9, 2025 at 2:37 PM
Reposted by Complexity Cat 🐱
Hey complexity and complexity-adjacent people:

What are some of your favorite pop-sci books? Are there any you've had your eye on but haven't had a chance to read yet?

They can be new or old. I'd just love to know what y'all are reading!
November 9, 2025 at 10:12 AM
Reposted by Complexity Cat 🐱
Her sister wrote my favorite essay about her. She points out that RF would have been famous even if she'd never looked at DNA

www.thelancet.com/journals/lan...
Remembering my sister Rosalind Franklin
Rosalind Franklin died of ovarian cancer in 1958 aged 37 years. Sympathy and feminism have combined to give us her familiar image as a downtrodden woman scientist, brilliant but neglected, a heroine t...
www.thelancet.com
November 7, 2025 at 11:20 PM
Reposted by Complexity Cat 🐱
Pinball model of development and reprogramming. pmc.ncbi.nlm.nih.gov/articles/PMC...
November 8, 2025 at 7:53 PM
Reposted by Complexity Cat 🐱
"It's Artificial Imitation,
not Artificial Intelligence."

In what circumstances, if any, would that statement be reasonable?
November 7, 2025 at 11:00 PM
Reposted by Complexity Cat 🐱
Neurocomputational architecture for syntax/language
Neuroscience & Philosophy Salon video.

Great presentation by @elliot-murphy.bsky.social and discussion with @wmatchin.bsky.social and @sandervanbree.bsky.social
Bonus: Check the first 17 min or so on Large Language Models
youtu.be/K5wd7nHxzNw
Brain architecture for syntax and language by Elliot Murphy with William Matchin and Sander van Bree
YouTube video by Neuroscience & Philosophy Salon
youtu.be
November 7, 2025 at 6:44 PM
Reposted by Complexity Cat 🐱
Have you noticed? We have a new domain! You can now officially find our content at complexitycat.org!
Complexity Cat
Exciting stuff on complex systems, theoretical biology, artificial intelligence, linguistics, neuroscience and their intersections.
complexitycat.org
November 7, 2025 at 2:35 PM
Reposted by Complexity Cat 🐱
Self-reference drives any theory of metabolic closure: autopoiesis, autocatalytic sets, (M,R)-systems...

Yet a recent paper by famous #ALife people overlooks key voices: Pattee, Cariani, Hofmeyr, Korbak.

Let's stop reinventing the wheel! Read the latest #complexitycat essay!✍️
November 7, 2025 at 2:35 PM
Reposted by Complexity Cat 🐱
Number of works focused on autopoiesis and (M, R)-systems. Counts are based on the Web of Science. It would be interesting to see if the trend has changed from 2013 to 2024...

Source: repositorio.uchile.cl/handle/2250/...
November 6, 2025 at 7:08 PM
Reposted by Complexity Cat 🐱
A first gem of our workshop next week, by @andrewyuanlee.bsky.social!

In case of interest, you're cordially invited to join us!
👉 www.uni-bamberg.de/en/bamxi/res... #ConSci
November 7, 2025 at 2:17 PM
Self-reference drives any theory of metabolic closure: autopoiesis, autocatalytic sets, (M,R)-systems...

Yet a recent paper by famous #ALife people overlooks key voices: Pattee, Cariani, Hofmeyr, Korbak.

Let's stop reinventing the wheel! Read the latest #complexitycat essay!✍️
November 7, 2025 at 2:35 PM
Reposted by Complexity Cat 🐱
The countdown starts right now.⌛️

In one month we will be starting the 14th International Conference on Complex Networks and their Applications, #ComplexNetworks2025!

Haven't registered yet? Join us from December 9th to 11th in Binghamton, NY. 🇺🇸
#NetworkScience #ComplexSystems
November 7, 2025 at 12:52 PM
Reposted by Complexity Cat 🐱
Very nice upcoming workshop at the Center for Philosophical Psychology (University of Antwerp) on how radical embodiment unfolds in complex, “wild” real-world environments.

www.dialecticalsystems.eu/events/works...
November 7, 2025 at 9:16 AM
Reposted by Complexity Cat 🐱
new paper with @robertchisciure.bsky.social

link.springer.com/article/10.1...

"Cognition all the way down 2.0: neuroscience beyond neurons in the diverse intelligence era"

🧪
Cognition all the way down 2.0: neuroscience beyond neurons in the diverse intelligence era - Synthese
This paper formalizes biological intelligence as search efficiency in multi-scale problem spaces, aiming to resolve epistemic deadlocks in the basal “cognition wars” unfolding in the Diverse Intellige...
link.springer.com
November 7, 2025 at 12:31 AM
Reposted by Complexity Cat 🐱
Marx as a philosophical biologist?

Chris Shambaugh on young Marx's account of organismal agency, its relation to human life to the critique of capitalism.

www.dialecticalsystems.eu/publications...
November 6, 2025 at 7:35 AM
Number of works focused on autopoiesis and (M, R)-systems. Counts are based on the Web of Science. It would be interesting to see if the trend has changed from 2013 to 2024...

Source: repositorio.uchile.cl/handle/2250/...
November 6, 2025 at 7:08 PM
Reposted by Complexity Cat 🐱
Why do cultural skills (reading, maths) consistently activate the same brain regions across people? @standehaene.bsky.social and L. Cohen argue that culture doesn’t create new brain circuits: it invades evolutionarily ancient maps of the cortex. check this great paper www.cell.com/action/showP...
November 6, 2025 at 5:55 PM