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amahury.bsky.social
Complexity Cat 🐱
@amahury.bsky.social
Exciting stuff on complexity, theoretical biology, artificial intelligence, linguistics, neuroscience and their intersections.

#complexitycat

complexitycat.org
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A group of renowned #ALife researchers recently published a paper exploring open questions on the relationship between life and self-reference.

As usual, part of the literature addressing these “unresolved problems” was ignored.../1🤓

#complexitycat 🐈‍⬛

amahury.github.io/posts/time-a...
Review Open Questions about Time and Self-reference in Living Systems
Today I am going to review a synthesis written by a group of renowned researchers of artificial life, who have omitted a couple of important contributions that close the gap with what they have called...
amahury.github.io
Reposted by Complexity Cat 🐱
40 years after The Dialectical Biologist, Richard Lewontin’s legacy still challenges how we think about life

A new report revisits his intertwining of philosophy, biology, and Marxism—and how organisms are subjects of their own evolution

www.dialecticalsystems.eu/contribution...
November 13, 2025 at 11:26 AM
Reposted by Complexity Cat 🐱
A group of renowned #ALife researchers recently published a paper exploring open questions on the relationship between life and self-reference.

As usual, part of the literature addressing these “unresolved problems” was ignored.../1🤓

#complexitycat 🐈‍⬛

amahury.github.io/posts/time-a...
Review Open Questions about Time and Self-reference in Living Systems
Today I am going to review a synthesis written by a group of renowned researchers of artificial life, who have omitted a couple of important contributions that close the gap with what they have called...
amahury.github.io
October 31, 2025 at 1:55 PM
Reposted by Complexity Cat 🐱
Please join us for this exciting new conference on the emergence, function and evolution of biological collectives - unpacking the wonderful world of self-organization: www.embl.org/about/info/c...
Collectivity in living systems: emergence, function, and evolution
www.embl.org
November 8, 2025 at 7:42 AM
Reposted by Complexity Cat 🐱
Cool!! I'll check it out. But, "thinking vs. obeying physics" - the standard paradigm says our thinking is obeying physics too, right? One question is: how much of more advanced "thinking" is also least action dynamics on more complex virtual spaces constructed by more advanced cognitive systems.
November 12, 2025 at 12:56 PM
Reposted by Complexity Cat 🐱
Cambridge – Tübingen PhD Fellowships in Machine Learning

Application deadline: November 17

#PhD #ML #MPI #Intelligence #AI ./16

www.complexitycat.org/posts/Cambri...
Cambridge – Tübingen PhD Fellowships in Machine Learning
Prof. Miri Zilka is recruiting a joint PhD student with Moritz Hardt for the fall 2026 intake!
www.complexitycat.org
November 10, 2025 at 2:26 PM
Reposted by Complexity Cat 🐱
Google DeepMind | Research Scientist in Machine Learning Optimization

Application open on a rolling basis

#job #AI #ML #Optimization #DeepMind #AGI ./15

www.complexitycat.org/posts/DeepMi...
Google DeepMind Research Scientist in Machine Learning Optimization
Research Scientists at Google DeepMind lead our efforts in developing novel algorithmic architecture towards the end goal of solving and building Artificial General Intelligence.
www.complexitycat.org
November 10, 2025 at 2:22 PM
Reposted by Complexity Cat 🐱
Reposted by Complexity Cat 🐱
Reposted by Complexity Cat 🐱
The brain is a dense, thorny network of neurons, which come in many flavors and whose behaviors are controlled by a menagerie of molecules released on precise timescales. It is staggeringly more complex than an AI algorithm. www.quantamagazine.org/ai-is-nothin...
November 12, 2025 at 4:46 PM
Reposted by Complexity Cat 🐱
How “intelligent” is a slime mold? When it solves mazes, it might not be thinking:it’s obeying physics. Our new paper with
@jordiplam.bsky.social shows how it follows a least action principle,letting physics do the job arxiv.org/pdf/2511.08531
@drmichaellevin.bsky.social @docteur-drey.bsky.social
November 12, 2025 at 4:17 AM
Reposted by Complexity Cat 🐱
Come join us in July 2026 for the 14th European Conference on Mathematical & Theoretical Biology in Graz, Austria!

Registration opens now: ecmtb2026.org

#ECMTB’26
@smbmathbiology.bsky.social
European Conference on Mathematical & Theoretical Biology 2026
ECMTB is coming to Graz, Austria in July 2026. Registration and Call for Contributions are open!
ecmtb2026.org
November 11, 2025 at 6:47 PM
Reposted by Complexity Cat 🐱
New chapter co-authored with William Bechtel on the notion of heterarchy #philbio

"Autonomy and Heterarchy: Organizing Control in Biological Organisms"

link.springer.com/chapter/10.1...
Autonomy and Heterarchy: Organizing Control in Biological Organisms
In order to maintain themselves as systems far from equilibrium with their environment, organisms must control the operation of numerous production mechanisms. Control involves mechanisms that make or...
link.springer.com
November 11, 2025 at 11:41 AM
Reposted by Complexity Cat 🐱
#complexitycat is releasing a new domain: now you can enjoy our content at complexitycat.org 😸

Don't forget to read our latest essay on self-reference and living systems. Soon we'll offer another review of a popular semantic information metric. Can you guess what it is?🫣
November 10, 2025 at 3:02 PM
Reposted by Complexity Cat 🐱
𝗜𝘀 𝘁𝗵𝗲 𝗯𝗿𝗮𝗶𝗻 𝗮 𝗰𝗼𝗺𝗽𝗹𝗲𝘅 𝗻𝗲𝘁𝘄𝗼𝗿𝗸?
In a sense yes, but does network science help us understand the brain as a complex system? Intriguing paper.
If anything the paper has 800+ refs!
#neuroskyence #complexsystems
doi.org/10.1016/j.pl...
November 10, 2025 at 6:14 PM
Reposted by Complexity Cat 🐱
📅 Mark your calendar!

Join us next Monday, Nov 17 at 11 AM ET, for our next seminar with Dr. Violeta Calleja Solanas (Doñana Biological Station) on time-varying ecological interactions.

See you all there!✨
November 10, 2025 at 5:37 PM
Reposted by Complexity Cat 🐱
"Cognition all the way down". Great to see this fine new paper from @robertchisciure.bsky.social & @drmichaellevin.bsky.social out now in Synthese - introducing a new metric to quantify biological intelligence as search efficiency in multidimensional problem spaces link.springer.com/article/10.1...
November 10, 2025 at 2:46 PM
Reposted by Complexity Cat 🐱
New Preprint: "Scaling laws in biological thermal performances" with a great team led by José Ignacio Arroyo and Amahury J. Lopez-Diaz, including Alejandro Maass, Pablo Marquet, Geoffrey West, and Christopher P. Kempes www.biorxiv.org/content/10.1...
Scaling laws in biological thermal performances
Understanding the extent to which genetic correlations change in response to environmental factors, such as temperature, is a poorly explored question, despite the importance of understanding how diff...
www.biorxiv.org
November 10, 2025 at 5:19 PM
Reposted by Complexity Cat 🐱
Scaling laws in biological thermal performances
Scaling laws in biological thermal performances
José Ignacio Arroyo, Amahury J. Lopez-Diaz, Alejandro Maass, Carlos Gershenson, Pablo Marquet, Geoffrey West, Christopher P. Kempes Understanding the extent to which genetic correlations change in response to environmental factors, such as temperature, is a poorly explored question, despite the importance of understanding how different processes will change with climate warming. Despite correlations between thermal performance traits having been reported in the literature for a few taxa and performance tasks, such as population growth rate, a comprehensive global analysis of the entire tree of life and multiple performance tasks remains an open challenge. To advance in this open question, we compile a database of 1,300 thermal response curves, encompassing 38 variable types related to individuals’ performance (including per capita population growth rate, photosynthetic rate, among others) and 1,125 different species, ranging from viruses to mammals, encompassing all major lineages of the tree of life. Our analysis reveals that among all possible relationships between traits and optimal performance, four traits form a line with a high goodness-of-fit, while the remaining traits exhibit a polygonal pattern, either a triangle or a tetrahedron. We derive a thermodynamic framework that explains the relationships described by a curve or line (as opposed to a surface or polygon), highlighting the linear relationship between maximum and minimum temperatures, as well as between maximum and optimum temperatures. We also discuss other generic trait evolution models, which could account for the other significant sublinear relationships, as well as the more general model, Pareto optimality theory, which could account for relationships in the form of lines or polygons. Our theoretical framework and empirical evidence suggest that, based on a single data point (e.g., minimum temperature), all critical temperature limits and maximum performance boundaries can be predicted using the estimated parameter from this study. Our results reveal universal scaling relationships in thermal performance, which could be useful for predicting changes in performance under scenarios of climate warming. Read the full article at: www.biorxiv.org See Also: A database of biological thermal performances
sco.lt
November 10, 2025 at 4:59 PM
#complexitycat is releasing a new domain: now you can enjoy our content at complexitycat.org 😸

Don't forget to read our latest essay on self-reference and living systems. Soon we'll offer another review of a popular semantic information metric. Can you guess what it is?🫣
November 10, 2025 at 3:02 PM
Reposted by Complexity Cat 🐱
Are you a scientist?

Is your research cool?

Do people not adequately appreciate how cool your research is?

I'm looking for researchers to feature in Q&A-style interviews on my blog and would love to hear from (or about — embarrass your friends!) scientists interested in sharing their work. 🧪
November 10, 2025 at 11:37 AM
Reposted by Complexity Cat 🐱
📢The 9th edition of the Summer School “Digital Tools for Humanists” will be held in Pisa from May 25 to May 30 2026, both in presence and online: digitaltools.labcd.unipi.it
Registration fee: 500 Euros.
DEADLINE: 15/04/2026

(Photo by Andrae Ricketts on Unsplash)
November 9, 2025 at 6:29 PM
Reposted by Complexity Cat 🐱
By replying to Elise below, we could generate a nice thread.
Hey complexity and complexity-adjacent people:

What are some of your favorite pop-sci books? Are there any you've had your eye on but haven't had a chance to read yet?

They can be new or old. I'd just love to know what y'all are reading!
November 9, 2025 at 2:37 PM
Reposted by Complexity Cat 🐱
Hey complexity and complexity-adjacent people:

What are some of your favorite pop-sci books? Are there any you've had your eye on but haven't had a chance to read yet?

They can be new or old. I'd just love to know what y'all are reading!
November 9, 2025 at 10:12 AM
Reposted by Complexity Cat 🐱
Her sister wrote my favorite essay about her. She points out that RF would have been famous even if she'd never looked at DNA

www.thelancet.com/journals/lan...
Remembering my sister Rosalind Franklin
Rosalind Franklin died of ovarian cancer in 1958 aged 37 years. Sympathy and feminism have combined to give us her familiar image as a downtrodden woman scientist, brilliant but neglected, a heroine t...
www.thelancet.com
November 7, 2025 at 11:20 PM
Reposted by Complexity Cat 🐱
Pinball model of development and reprogramming. pmc.ncbi.nlm.nih.gov/articles/PMC...
November 8, 2025 at 7:53 PM