Alexander Petri
@alexanderjpetri.bsky.social
PHD student in Computational Mathematics @ Stockholm University, developing algorithms for long read sequencing data, github: https://github.com/aljpetri/
Reposted by Alexander Petri
Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler that I've been working on during my postdoc in the Heng Li lab (@lh3lh3.bsky.social).
myloasm-docs.github.io
myloasm-docs.github.io
myloasm - metagenomic assembly with (noisy) long reads
myloasm-docs.github.io
May 28, 2025 at 5:54 PM
Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler that I've been working on during my postdoc in the Heng Li lab (@lh3lh3.bsky.social).
myloasm-docs.github.io
myloasm-docs.github.io
Reposted by Alexander Petri
@alexanderjpetri.bsky.social's isONclust3 algorithm is now published doi.org/10.1093/bioi.... isONclust3 performs de novo clustering of long-read cDNA sequencing data. A key step in reference-free transcriptome analysis.
De novo clustering of large long-read transcriptome datasets with isONclust3
AbstractMotivation. Long-read sequencing techniques can sequence transcripts from end to end, greatly improving our ability to study the transcription proc
doi.org
May 8, 2025 at 1:04 PM
@alexanderjpetri.bsky.social's isONclust3 algorithm is now published doi.org/10.1093/bioi.... isONclust3 performs de novo clustering of long-read cDNA sequencing data. A key step in reference-free transcriptome analysis.
Reposted by Alexander Petri
🚀Exciting PhD Opportunity🚀
Are you passionate about:
🧬 Graph algorithms for real-world genome sequencing?
💻 Writing efficient, reusable code & libraries?
🌲 Exploring stunning Nordic nature?
This PhD position is for YOU! 🎓✨
📅 Apply by March 2
#PhD #ComputerScience #Bioinformatics #GraphAlgorithms
Are you passionate about:
🧬 Graph algorithms for real-world genome sequencing?
💻 Writing efficient, reusable code & libraries?
🌲 Exploring stunning Nordic nature?
This PhD position is for YOU! 🎓✨
📅 Apply by March 2
#PhD #ComputerScience #Bioinformatics #GraphAlgorithms
www.cs.helsinki.fi
February 6, 2025 at 3:12 PM
🚀Exciting PhD Opportunity🚀
Are you passionate about:
🧬 Graph algorithms for real-world genome sequencing?
💻 Writing efficient, reusable code & libraries?
🌲 Exploring stunning Nordic nature?
This PhD position is for YOU! 🎓✨
📅 Apply by March 2
#PhD #ComputerScience #Bioinformatics #GraphAlgorithms
Are you passionate about:
🧬 Graph algorithms for real-world genome sequencing?
💻 Writing efficient, reusable code & libraries?
🌲 Exploring stunning Nordic nature?
This PhD position is for YOU! 🎓✨
📅 Apply by March 2
#PhD #ComputerScience #Bioinformatics #GraphAlgorithms
Reposted by Alexander Petri
I made a starter pack for algorithmic genomics. It's certainly incomplete, but already has a ton of awesome peeps. Let me know if you know people I should add (with a focus on algorithms and data structures in genomics)
go.bsky.app/TRWCnZs
go.bsky.app/TRWCnZs
November 12, 2024 at 2:03 PM
I made a starter pack for algorithmic genomics. It's certainly incomplete, but already has a ton of awesome peeps. Let me know if you know people I should add (with a focus on algorithms and data structures in genomics)
go.bsky.app/TRWCnZs
go.bsky.app/TRWCnZs