Yuki Yamashita
@ydymst.bsky.social
1st year PhD student @Hiroshima Univ.
I'm interested in the morphology, development, and evolution of bryophytes.
I'm interested in the morphology, development, and evolution of bryophytes.
I listened to a seminar related to this work. Membrane topology inversion is very interesting.
doi.org/10.1126/scie...
doi.org/10.1126/scie...
Membrane topology inversion of GGCX mediates cytoplasmic carboxylation for antiviral defense
Mitochondrial antiviral signaling protein (MAVS) is an adaptor involved in antiviral immunity, but its regulation is not fully understood. We identified carboxylation of MAVS by vitamin K (VK)–depende...
doi.org
October 16, 2025 at 6:07 AM
I listened to a seminar related to this work. Membrane topology inversion is very interesting.
doi.org/10.1126/scie...
doi.org/10.1126/scie...
Bryophytes hold a larger gene family space than vascular plants | Dong et al. (2025) Nature Plants rdcu.be/eKcyO
This is definitely interesting and important to bryophyte research. I feel this way, but I haven't finished reading it yet. I have no idea when I will finish reading this paper. 😅
This is definitely interesting and important to bryophyte research. I feel this way, but I haven't finished reading it yet. I have no idea when I will finish reading this paper. 😅
Bryophytes hold a larger gene family space than vascular plants
Nature Genetics - A super-pangenome analysis incorporating 123 newly sequenced bryophyte genomes reveals that bryophytes exhibit a larger number of unique and lineage-specific gene families than...
rdcu.be
October 9, 2025 at 4:05 PM
Bryophytes hold a larger gene family space than vascular plants | Dong et al. (2025) Nature Plants rdcu.be/eKcyO
This is definitely interesting and important to bryophyte research. I feel this way, but I haven't finished reading it yet. I have no idea when I will finish reading this paper. 😅
This is definitely interesting and important to bryophyte research. I feel this way, but I haven't finished reading it yet. I have no idea when I will finish reading this paper. 😅
Wow! Bookmark has been introduced! Amazing!
September 22, 2025 at 6:11 PM
Wow! Bookmark has been introduced! Amazing!
How wonderful bryophytes are!
September 5, 2025 at 2:31 PM
How wonderful bryophytes are!
Chromosome level assembly and annotation of Cuscuta campestris Yunck. (“field dodder”), a model parasitic plant | Cerda-Herrera (2025) G3 doi.org/10.1093/g3jo...
Chromosome level assembly and annotation of Cuscuta campestris Yunck. (“field dodder”), a model parasitic plant
Abstract. We present the first chromosome-level genome assembly and annotation for the genus Cuscuta, a twining and leafless parasitic plant of the morning
doi.org
August 22, 2025 at 1:51 AM
Chromosome level assembly and annotation of Cuscuta campestris Yunck. (“field dodder”), a model parasitic plant | Cerda-Herrera (2025) G3 doi.org/10.1093/g3jo...
Reposted by Yuki Yamashita
Announcement of a chromosome-level assembly and annotation of #parasiticplant Cuscuta campestris
Horizontal Gene Transfer: Latest results from PubMed
Chromosome level assembly and annotation of Cuscuta campestris Yunck. ("field dodder"), a model parasitic plant
#NCBI #PubMed #HGT
Chromosome level assembly and annotation of Cuscuta campestris Yunck. ("field dodder"), a model parasitic plant
#NCBI #PubMed #HGT
Chromosome level assembly and annotation of Cuscuta campestris Yunck. ("field dodder"), a model parasitic plant - PubMed
We present the first chromosome-level genome assembly and annotation for the genus Cuscuta, a twining and leafless parasitic plant of the morning glory family (Convolvulaceae). C. campestris, the study species, is a widely studied model parasite, due in part to its worldwide occurrence as a weed of …
pubmed.ncbi.nlm.nih.gov
August 21, 2025 at 2:09 PM
Announcement of a chromosome-level assembly and annotation of #parasiticplant Cuscuta campestris
To gall researchers, the two papers of my previous supervisor have been out! I am very happy to somewhat contribute one of them. Please check it out!
Parasitic-Plant Parasite Rewires Flowering Pathways to Induce Stem-Derived Galls | Udandarao et al. (2025) Plant Direct doi.org/10.1002/pld3...
Parasitic-Plant Parasite Rewires Flowering Pathways to Induce Stem-Derived Galls | Udandarao et al. (2025) Plant Direct doi.org/10.1002/pld3...
Parasitic‐Plant Parasite Rewires Flowering Pathways to Induce Stem‐Derived Galls
Gall-inducing insects manipulate host plant development, redirecting cellular fate and physiological processes to form novel structures. This phenomenon is even more intriguing when the host itself i...
doi.org
August 21, 2025 at 12:51 PM
To gall researchers, the two papers of my previous supervisor have been out! I am very happy to somewhat contribute one of them. Please check it out!
Parasitic-Plant Parasite Rewires Flowering Pathways to Induce Stem-Derived Galls | Udandarao et al. (2025) Plant Direct doi.org/10.1002/pld3...
Parasitic-Plant Parasite Rewires Flowering Pathways to Induce Stem-Derived Galls | Udandarao et al. (2025) Plant Direct doi.org/10.1002/pld3...
Reposted by Yuki Yamashita
To promote the collection, I’ve launched a designer clothing line where synthetic biology meets aesthetics.
I will give out 100 free limited edition shirts to the first who retweet and order with their handle in the name! Available here → nickdesnoyer.com 🧵(6/7)
I will give out 100 free limited edition shirts to the first who retweet and order with their handle in the name! Available here → nickdesnoyer.com 🧵(6/7)
August 11, 2025 at 6:54 PM
To promote the collection, I’ve launched a designer clothing line where synthetic biology meets aesthetics.
I will give out 100 free limited edition shirts to the first who retweet and order with their handle in the name! Available here → nickdesnoyer.com 🧵(6/7)
I will give out 100 free limited edition shirts to the first who retweet and order with their handle in the name! Available here → nickdesnoyer.com 🧵(6/7)
I went to Mt. Norikura at northern Japanese alps last weekend for TA works. The environment was very unique and many plants I’ve never seen were there. Going back to the base, I saw the dynamic changes of the vegetation from alpine zone to subalpine zone. It was a good experience for me.
August 10, 2025 at 6:25 AM
I went to Mt. Norikura at northern Japanese alps last weekend for TA works. The environment was very unique and many plants I’ve never seen were there. Going back to the base, I saw the dynamic changes of the vegetation from alpine zone to subalpine zone. It was a good experience for me.
Three-dimensional anatomy and dorsoventral asymmetry of the mature Marchantia polymorpha meristem develops from a symmetrical gemma meristem | Spencer et al. (2024) Development doi.org/10.1242/dev....
Three-dimensional anatomy and dorsoventral asymmetry of the mature Marchantia polymorpha meristem develops from a symmetrical gemma meristem
Summary: The anatomy, symmetry and gene expression of the Marchantia polymorpha meristem changes during its lifespan, providing a foundational framework for identifying previously unreported mechanism...
doi.org
July 1, 2025 at 3:57 PM
Three-dimensional anatomy and dorsoventral asymmetry of the mature Marchantia polymorpha meristem develops from a symmetrical gemma meristem | Spencer et al. (2024) Development doi.org/10.1242/dev....
Naming is caring. Nat. Plants 11, 1091–1092 (2025). doi.org/10.1038/s414...
Naming is caring - Nature Plants
We can now carry in our pockets applications that accurately identify the plants around us. These are interesting tools for researchers, but they also help everyone to appreciate the diversity of the ...
doi.org
June 22, 2025 at 4:54 PM
Naming is caring. Nat. Plants 11, 1091–1092 (2025). doi.org/10.1038/s414...
Reproducibly oriented cell divisions pattern the prothallus to set up dorsoventrality and de novo meristem formation in Marchantia polymorpha | Wallner and Dolan (2023) Current Biology www.cell.com/current-biol...
Reproducibly oriented cell divisions pattern the prothallus to set up dorsoventrality and de novo meristem formation in Marchantia polymorpha
Wallner and Dolan describe the cell division patterns that form the flat Marchantia
prothallus from a single-celled spore. A meristem with an apical stem cell develops
on the prothallus to initiate in...
www.cell.com
June 22, 2025 at 10:48 AM
Reproducibly oriented cell divisions pattern the prothallus to set up dorsoventrality and de novo meristem formation in Marchantia polymorpha | Wallner and Dolan (2023) Current Biology www.cell.com/current-biol...
車軸藻クレブソルミディウムのゲノムから見た植物の陸上化 | 堀, 太田 (2016) BSJ Review bsj.or.jp/jpn/general/...
bsj.or.jp
June 11, 2025 at 10:06 AM
車軸藻クレブソルミディウムのゲノムから見た植物の陸上化 | 堀, 太田 (2016) BSJ Review bsj.or.jp/jpn/general/...
植物の上陸作戦＝シャジクモの辿った道 | 坂下 BSJ Review (2010)
bsj.or.jp/jpn/general/...
bsj.or.jp/jpn/general/...
bsj.or.jp
June 11, 2025 at 10:03 AM
植物の上陸作戦＝シャジクモの辿った道 | 坂下 BSJ Review (2010)
bsj.or.jp/jpn/general/...
bsj.or.jp/jpn/general/...
In-insect synthesis of oxygen-doped molecular nanocarbons | Science www.science.org/doi/10.1126/...
This research is super interesting! An insect is like a function.
Insect(an organic compound) = a new organic compound
This research is super interesting! An insect is like a function.
Insect(an organic compound) = a new organic compound
In-insect synthesis of oxygen-doped molecular nanocarbons
Many functional molecules and materials have been produced with organic chemistry or with in vitro enzymatic approaches. Individual organisms, such as insects, have the potential to serve as natural r...
www.science.org
June 6, 2025 at 5:04 PM
In-insect synthesis of oxygen-doped molecular nanocarbons | Science www.science.org/doi/10.1126/...
This research is super interesting! An insect is like a function.
Insect(an organic compound) = a new organic compound
This research is super interesting! An insect is like a function.
Insect(an organic compound) = a new organic compound
This review is educational to see the field of plant cell biology, especially cell division, the growth and the fate. doi.org/10.1093/plce...
Cycling in a crowd: Coordination of plant cell division, growth, and cell fate
Plant cell cycle and division are linked to specific cell fates and respond to growth-related cues, such as metabolic state, cell size, cell shape, and mec
doi.org
May 6, 2025 at 2:02 PM
This review is educational to see the field of plant cell biology, especially cell division, the growth and the fate. doi.org/10.1093/plce...
I found Anthoceros agrestis at my university! Tiny horns!
April 10, 2025 at 2:46 PM
I found Anthoceros agrestis at my university! Tiny horns!
This reading helps us to think about how we manage and drive our research. www.nature.com/articles/s41...
Openness guides discovery - Nature Biotechnology
Nature Biotechnology - Openness guides discovery
www.nature.com
April 7, 2025 at 7:12 AM
This reading helps us to think about how we manage and drive our research. www.nature.com/articles/s41...
Finally, I start my PhD research at Hiroshima University supervised by Dr. Shimamura! Bon voyage 🚀🚀🚀
April 1, 2025 at 2:33 PM
Finally, I start my PhD research at Hiroshima University supervised by Dr. Shimamura! Bon voyage 🚀🚀🚀
Reposted by Yuki Yamashita
Dear US colleagues,
In response to the Trump administration, my university @univ-amu.fr is setting up a new program dedicated to welcoming American scientists wishing to pursue their work in France.
There are several M$ in the budget.
www.univ-amu.fr/en/public/ac...
In response to the Trump administration, my university @univ-amu.fr is setting up a new program dedicated to welcoming American scientists wishing to pursue their work in France.
There are several M$ in the budget.
www.univ-amu.fr/en/public/ac...
Safe Place For Science: Aix Marseille Université ready to welcome American scientists | Aix Marseille Université
In a context where some scientists in the United States may feel threatened or hindered in their research, our university is announcing the launch of the Safe Place For Science program, dedicated to w...
www.univ-amu.fr
March 7, 2025 at 1:32 PM
Dear US colleagues,
In response to the Trump administration, my university @univ-amu.fr is setting up a new program dedicated to welcoming American scientists wishing to pursue their work in France.
There are several M$ in the budget.
www.univ-amu.fr/en/public/ac...
In response to the Trump administration, my university @univ-amu.fr is setting up a new program dedicated to welcoming American scientists wishing to pursue their work in France.
There are several M$ in the budget.
www.univ-amu.fr/en/public/ac...
Reposted by Yuki Yamashita
Dear French and Japanese colleagues, mark your calendars!
We are organising the bilateral France-Japan "Frontiers in Plant Biology" symposium.
Date: November 19-21, 2025
Location: Strasbourg
More information soon!
#plantscience
We are organising the bilateral France-Japan "Frontiers in Plant Biology" symposium.
Date: November 19-21, 2025
Location: Strasbourg
More information soon!
#plantscience
January 6, 2025 at 12:45 PM
Dear French and Japanese colleagues, mark your calendars!
We are organising the bilateral France-Japan "Frontiers in Plant Biology" symposium.
Date: November 19-21, 2025
Location: Strasbourg
More information soon!
#plantscience
We are organising the bilateral France-Japan "Frontiers in Plant Biology" symposium.
Date: November 19-21, 2025
Location: Strasbourg
More information soon!
#plantscience
Ma amie est au Japon! Bienvenue dans mon pays! 🇯🇵
December 12, 2024 at 12:58 PM
Ma amie est au Japon! Bienvenue dans mon pays! 🇯🇵