Ruben Dries
@rndries.bsky.social
Spatial biology | Software engineering | Giotto Suite | Oncology Research | Cancer Disparities
www.drieslab.com
www.giottosuite.com
www.drieslab.com
www.giottosuite.com
Reposted by Ruben Dries
Sharing a new biorxiv paper that I helped out on. We compiled osteosarcoma #SingleCell RNAseq data from humans, canines, mouse and PDX models - both primary and mets. We found interesting tumor subpopulations. Should be a very useful resource to study OS!
🧬 🖥️
www.linkedin.com/posts/yogibu...
🧬 🖥️
www.linkedin.com/posts/yogibu...
#osteosarcoma #singlecell #spatialtranscriptomics #tumormicroenvironment #comparativeoncology #bioinformatics #cancerresearch | Yogesh Budhathoki
🎉 First-author preprint now available on bioRxiv! 🎉
I’m excited to share our latest work, presenting an integrative single-cell and spatial transcriptomic analysis of osteosarcoma, mapping cellular ec...
www.linkedin.com
January 16, 2026 at 9:09 PM
Sharing a new biorxiv paper that I helped out on. We compiled osteosarcoma #SingleCell RNAseq data from humans, canines, mouse and PDX models - both primary and mets. We found interesting tumor subpopulations. Should be a very useful resource to study OS!
🧬 🖥️
www.linkedin.com/posts/yogibu...
🧬 🖥️
www.linkedin.com/posts/yogibu...
Reposted by Ruben Dries
Giotto Suite provides a comprehensive, flexible and scalable platform for technology-agnostic spatial omics analysis using R. @rndries.bsky.social
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystem - Nature Methods
Giotto Suite provides a comprehensive, flexible and scalable platform for technology-agnostic spatial omics analysis using R.
www.nature.com
October 3, 2025 at 12:44 PM
Giotto Suite provides a comprehensive, flexible and scalable platform for technology-agnostic spatial omics analysis using R. @rndries.bsky.social
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Very proud to finally publish Giotto Suite after many years of hard work. It's a big milestone for our lab and will be a massive stepping stone for our ongoing projects and ideas. Take a look at giottosuite.com and feel free to share feedback and ideas for improvement.
October 2, 2025 at 2:02 PM
Very proud to finally publish Giotto Suite after many years of hard work. It's a big milestone for our lab and will be a massive stepping stone for our ongoing projects and ideas. Take a look at giottosuite.com and feel free to share feedback and ideas for improvement.
Reposted by Ruben Dries
KODAMA goes spatial.
doi.org/10.1101/2025...
#spatialtranscriptomics #visium #visiumhd #seurat #giotto
doi.org/10.1101/2025...
#spatialtranscriptomics #visium #visiumhd #seurat #giotto
June 2, 2025 at 8:22 PM
KODAMA goes spatial.
doi.org/10.1101/2025...
#spatialtranscriptomics #visium #visiumhd #seurat #giotto
doi.org/10.1101/2025...
#spatialtranscriptomics #visium #visiumhd #seurat #giotto
And the method of the year is .... Spatial Proteomics www.nature.com/articles/s41...
Method of the Year 2024: spatial proteomics - Nature Methods
Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in health and disease.
www.nature.com
December 6, 2024 at 8:31 PM
And the method of the year is .... Spatial Proteomics www.nature.com/articles/s41...
Reposted by Ruben Dries
Whole-brain spatial transcriptional analysis at cellular resolution
Incredible study - 3D single cell imaging of the entire mouse brain - also on the cover of this week's #Science
🧪🔬🤯
www.science.org/doi/10.1126/...
Incredible study - 3D single cell imaging of the entire mouse brain - also on the cover of this week's #Science
🧪🔬🤯
www.science.org/doi/10.1126/...
November 22, 2024 at 4:16 PM
Whole-brain spatial transcriptional analysis at cellular resolution
Incredible study - 3D single cell imaging of the entire mouse brain - also on the cover of this week's #Science
🧪🔬🤯
www.science.org/doi/10.1126/...
Incredible study - 3D single cell imaging of the entire mouse brain - also on the cover of this week's #Science
🧪🔬🤯
www.science.org/doi/10.1126/...
Reposted by Ruben Dries
Starter a Spatial Tissue Profling/Omics/Biology Startup package. Will be updating often.
Please stop by again soon!
go.bsky.app/7a9Frz9
Please stop by again soon!
go.bsky.app/7a9Frz9
November 24, 2024 at 2:53 PM
Starter a Spatial Tissue Profling/Omics/Biology Startup package. Will be updating often.
Please stop by again soon!
go.bsky.app/7a9Frz9
Please stop by again soon!
go.bsky.app/7a9Frz9