Matt Cannon
@mattvcannon1.bsky.social
Bioinformatics, genomics, single-cell sequencing, 3D printing and CAD
https://github.com/MVesuviusC
https://github.com/kidcancerlab
https://github.com/MVesuviusC
https://github.com/kidcancerlab
It always annoys me too much when spotify puts ads between brainstew and jaded...
October 29, 2025 at 1:43 PM
It always annoys me too much when spotify puts ads between brainstew and jaded...
🧵- I spent years underestimating the importance of self-promotion and networking.
I gave a talk last week about this. Who you know, and, more importantly, **who knows you**, is critical. More than just getting a job; it’s about publishing, getting grants, collaborations and getting invited to speak.
I gave a talk last week about this. Who you know, and, more importantly, **who knows you**, is critical. More than just getting a job; it’s about publishing, getting grants, collaborations and getting invited to speak.
October 15, 2025 at 1:53 AM
🧵- I spent years underestimating the importance of self-promotion and networking.
I gave a talk last week about this. Who you know, and, more importantly, **who knows you**, is critical. More than just getting a job; it’s about publishing, getting grants, collaborations and getting invited to speak.
I gave a talk last week about this. Who you know, and, more importantly, **who knows you**, is critical. More than just getting a job; it’s about publishing, getting grants, collaborations and getting invited to speak.
Reposted by Matt Cannon
5 minutes statistics: stephens999.github.io/fiveMinuteS...
October 14, 2025 at 1:45 PM
5 minutes statistics: stephens999.github.io/fiveMinuteS...
Reposted by Matt Cannon
Hi bioinformatics, genomics and CS friends! Please help me spread the word. I'm hiring a postdoc! Come work on cutting edge method development in algorithmic genomics with me and my group at @umdscience.bsky.social! 🖥️🧬
And it's posted! If you're interested and eligible, please consider applying through the UMD portal: umd.wd1.myworkdayjobs.com/en-US/UMCP/j....
If you're a PI working in algorithmic genomics (& you can recommend my lab to your top graduating students ;P), please let them know!
If you're a PI working in algorithmic genomics (& you can recommend my lab to your top graduating students ;P), please let them know!
October 10, 2025 at 1:02 PM
Hi bioinformatics, genomics and CS friends! Please help me spread the word. I'm hiring a postdoc! Come work on cutting edge method development in algorithmic genomics with me and my group at @umdscience.bsky.social! 🖥️🧬
This issue is something I've bumped up against myself:
"Only ~40% of studies provided readily usable processed count data that could be reliably mapped to GEO metadata, and fewer than 10% included author-provided celltype annotations"
Strict structure for scRNAseq GEO submissions is needed
"Only ~40% of studies provided readily usable processed count data that could be reliably mapped to GEO metadata, and fewer than 10% included author-provided celltype annotations"
Strict structure for scRNAseq GEO submissions is needed
Persistent hindrances to data re-use in single-cell genomics https://www.biorxiv.org/content/10.1101/2025.10.02.680150v1
October 3, 2025 at 2:45 PM
This issue is something I've bumped up against myself:
"Only ~40% of studies provided readily usable processed count data that could be reliably mapped to GEO metadata, and fewer than 10% included author-provided celltype annotations"
Strict structure for scRNAseq GEO submissions is needed
"Only ~40% of studies provided readily usable processed count data that could be reliably mapped to GEO metadata, and fewer than 10% included author-provided celltype annotations"
Strict structure for scRNAseq GEO submissions is needed
Reposted by Matt Cannon
Very proud to finally publish Giotto Suite after many years of hard work. It's a big milestone for our lab and will be a massive stepping stone for our ongoing projects and ideas. Take a look at giottosuite.com and feel free to share feedback and ideas for improvement.
October 2, 2025 at 2:02 PM
Very proud to finally publish Giotto Suite after many years of hard work. It's a big milestone for our lab and will be a massive stepping stone for our ongoing projects and ideas. Take a look at giottosuite.com and feel free to share feedback and ideas for improvement.
Reposted by Matt Cannon
September 25, 2025 at 9:50 PM
Paper from a good lab, though I'm a bit biased!
The UTRs of Leishmania donovani vary in length and are enriched in potential regulatory structures https://www.biorxiv.org/content/10.1101/2025.09.22.677690v1
September 22, 2025 at 12:36 PM
Paper from a good lab, though I'm a bit biased!
I put an intro to regex up that I'm using for an upcoming meeting. Putting it up here as well in case anyone wants to check it out: github.com/MVesuviusC/b...
bioinformatics_meeting/regex/regex.Rmd at main · MVesuviusC/bioinformatics_meeting
Contribute to MVesuviusC/bioinformatics_meeting development by creating an account on GitHub.
github.com
September 17, 2025 at 7:32 PM
I put an intro to regex up that I'm using for an upcoming meeting. Putting it up here as well in case anyone wants to check it out: github.com/MVesuviusC/b...
Reposted by Matt Cannon
I put together a talk on some general #coding and project management best-practice suggestions for #bioinformatics 🧬🖥️ for a meeting I'm hosting tomorrow. I thought I'd share in case others found it useful. Suggestions of other concepts I can add are welcome!
github.com/MVesuviusC/b...
github.com/MVesuviusC/b...
bioinformatics_meeting/coding_best_practice/coding_best_practices.qmd at main · MVesuviusC/bioinformatics_meeting
Contribute to MVesuviusC/bioinformatics_meeting development by creating an account on GitHub.
github.com
August 13, 2025 at 6:44 PM
I put together a talk on some general #coding and project management best-practice suggestions for #bioinformatics 🧬🖥️ for a meeting I'm hosting tomorrow. I thought I'd share in case others found it useful. Suggestions of other concepts I can add are welcome!
github.com/MVesuviusC/b...
github.com/MVesuviusC/b...
Reposted by Matt Cannon
📣📣 Do you remember the Human Genome Project? I used to maintain the NIH’s HGP archives. Now I don’t know what will happen to them www.statnews.com/2025/06/05/n...
Do you remember the Human Genome Project? I’m not sure the Trump administration wants you to
The NIH archives of the Human Genome Project could fall victim to Trump administration cuts, writes a former archivist.
www.statnews.com
June 6, 2025 at 7:17 AM
📣📣 Do you remember the Human Genome Project? I used to maintain the NIH’s HGP archives. Now I don’t know what will happen to them www.statnews.com/2025/06/05/n...
Reposted by Matt Cannon
My 6th grader is doing a survey for ethics class on the concepts of happiness and luck (or Glück for the German speakers). If you have a few minutes to submit your thoughts she’d appreciate it. docs.google.com/forms/d/1y2b...
May 27, 2025 at 6:03 AM
My 6th grader is doing a survey for ethics class on the concepts of happiness and luck (or Glück for the German speakers). If you have a few minutes to submit your thoughts she’d appreciate it. docs.google.com/forms/d/1y2b...
Reposted by Matt Cannon
The Kendall Lab is at #AACR25! Jack Kucinski is presenting in the Developmental Origins and Drivers of Pediatric Cancers poster session on Monday afternoon. Chinmay Sankhe and Delia Calderon are presenting at the Pediatric Cancer Models poster session on Tuesday morning. Hope to see you there!
April 26, 2025 at 7:16 PM
The Kendall Lab is at #AACR25! Jack Kucinski is presenting in the Developmental Origins and Drivers of Pediatric Cancers poster session on Monday afternoon. Chinmay Sankhe and Delia Calderon are presenting at the Pediatric Cancer Models poster session on Tuesday morning. Hope to see you there!
Just finished up the materials for a intro to R workshop I'm running for folks at work. Thought I would post the GitHub to the materials here as well in case it was of use to anyone else: github.com/MVesuviusC/R...
🧬 🖥️ #bioinformatics #genomics #tidyverse #R #rstats #programming #r4ds
🧬 🖥️ #bioinformatics #genomics #tidyverse #R #rstats #programming #r4ds
GitHub - MVesuviusC/R_workshop
Contribute to MVesuviusC/R_workshop development by creating an account on GitHub.
github.com
March 27, 2025 at 7:24 PM
Just finished up the materials for a intro to R workshop I'm running for folks at work. Thought I would post the GitHub to the materials here as well in case it was of use to anyone else: github.com/MVesuviusC/R...
🧬 🖥️ #bioinformatics #genomics #tidyverse #R #rstats #programming #r4ds
🧬 🖥️ #bioinformatics #genomics #tidyverse #R #rstats #programming #r4ds
Bash scripting is a very useful skill to have!
January 15, 2025 at 4:53 PM
Bash scripting is a very useful skill to have!
Reposted by Matt Cannon
I'm hiring! Currently accepting applications for center coordinator, bioinformatics engineer/scientist, and postdoctoral researcher. Please share with those that might be interested: genomeinformatics.github.io/jobs2024/
The NHGRI Center for Genomics and Data Science Research is hiring!
Join our team and contribute to the development of complete, personalized “telomere-to-telomere” (T2T) genome assemblies and the analysis of previously inaccessible regions of the genome! We are curre...
genomeinformatics.github.io
August 13, 2024 at 8:53 PM
I'm hiring! Currently accepting applications for center coordinator, bioinformatics engineer/scientist, and postdoctoral researcher. Please share with those that might be interested: genomeinformatics.github.io/jobs2024/