Learn more about Mahlon's journey: bit.ly/3NoKX4g
Learn more about Mahlon's journey: bit.ly/3NoKX4g
Come to #Boston this July to shape the next chapter and have your voice heard.
Abstract deadline: Apr 1, 2026.
single-cell.net/proteomics/s...
Come to #Boston this July to shape the next chapter and have your voice heard.
Abstract deadline: Apr 1, 2026.
single-cell.net/proteomics/s...
ionopticks.com/2026/01/09/f...
ionopticks.com/2026/01/09/f...
youtu.be/L5W-lV1K_xQ?...
youtu.be/L5W-lV1K_xQ?...
Using single-cell proteomics, we discovered protein (and functional) symmetry breaking in mammalian embryos long before major transcriptome differences are detectable.
cell.com/cell/fulltex...
Using single-cell proteomics, we discovered protein (and functional) symmetry breaking in mammalian embryos long before major transcriptome differences are detectable.
cell.com/cell/fulltex...
It illuminates the frontiers of biomedical research.
Together with the Zernicka-Goetz lab, we show that fertilization triggers proteomic asymmetry in mammalian zygotes, giving rise to alpha vs. beta 2-cell blastomeres with distinct developmental potential.
cell.com/cell/fulltex...
It illuminates the frontiers of biomedical research.
⬛️ Their abundance strongly declines in AD patients.
=> This decline parallels a reduction in 20S substrate proteins and leads to abnormal protein accumulation in AD.
biorxiv.org/content/10.1...
⬛️ Their abundance strongly declines in AD patients.
=> This decline parallels a reduction in 20S substrate proteins and leads to abnormal protein accumulation in AD.
biorxiv.org/content/10.1...
Workshop participation is free with in-person conference registration but requires an advanced registration. To facilitate interactions and hands-on experience, participation is limited.
The 9th Single Cell Proteomics Conference (#SCP2026) will take place in #Boston, July 2026.
The Single Cell Proteomics Conference focuses on providing opportunities for scientific discussions, interactions and community development.
single-cell.net/proteomics/s...
Workshop participation is free with in-person conference registration but requires an advanced registration. To facilitate interactions and hands-on experience, participation is limited.
youtu.be/YFfeJqHC3tM
youtu.be/YFfeJqHC3tM
timePlex, PSMtags, and JMod can all support increased throughput for 𝑖𝑛 𝑣𝑖𝑣𝑜 metabolic pulse experiments, and thus make dynamic protein analysis more scalable.
Quote
Mass spec offers a solution.
⬛️ It enables omics scale quantification of the rates of macromolecule synthesis and degradation in a living organism.
blog.slavovlab.net/2025/11/19/i...
timePlex, PSMtags, and JMod can all support increased throughput for 𝑖𝑛 𝑣𝑖𝑣𝑜 metabolic pulse experiments, and thus make dynamic protein analysis more scalable.
Quote
⬛️ Their abundance strongly declines in AD patients.
=> This decline parallels a reduction in 20S substrate proteins and leads to abnormal protein accumulation in AD.
www.biorxiv.org/content/10.1...
www.youtube.com/watch?v=WUU1...
www.youtube.com/watch?v=WUU1...
Protein functions change due to sequence variants and diverse modifications regulating their activities.
𝐓𝐨 𝐬𝐞𝐞 𝐛𝐢𝐨𝐥𝐨𝐠𝐲 (𝐚𝐧𝐝 𝐝𝐢𝐬𝐞𝐚𝐬𝐞) 𝐜𝐥𝐞𝐚𝐫𝐥𝐲, 𝐰𝐞 𝐧𝐞𝐞𝐝 𝐩𝐫𝐨𝐭𝐞𝐨𝐟𝐨𝐫𝐦-𝐥𝐞𝐯𝐞𝐥 𝐪𝐮𝐚𝐧𝐭𝐢𝐟𝐢𝐜𝐚𝐭𝐢𝐨𝐧 𝐚𝐭 𝐬𝐜𝐚𝐥𝐞.
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Peptides from some proteoforms correlate better to epitope-based measurements (Olink) than others.
The measurements differ because they reflect different proteoforms !
Protein functions change due to sequence variants and diverse modifications regulating their activities.
𝐓𝐨 𝐬𝐞𝐞 𝐛𝐢𝐨𝐥𝐨𝐠𝐲 (𝐚𝐧𝐝 𝐝𝐢𝐬𝐞𝐚𝐬𝐞) 𝐜𝐥𝐞𝐚𝐫𝐥𝐲, 𝐰𝐞 𝐧𝐞𝐞𝐝 𝐩𝐫𝐨𝐭𝐞𝐨𝐟𝐨𝐫𝐦-𝐥𝐞𝐯𝐞𝐥 𝐪𝐮𝐚𝐧𝐭𝐢𝐟𝐢𝐜𝐚𝐭𝐢𝐨𝐧 𝐚𝐭 𝐬𝐜𝐚𝐥𝐞.
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Our team, led by Jason Derks, enabled combinatorial-scaling of mass spec proteomics throughput by developing multiplexing in the time domain, timePlex.
1/n
Our team, led by Jason Derks, enabled combinatorial-scaling of mass spec proteomics throughput by developing multiplexing in the time domain, timePlex.
1/n
youtu.be/UD8uSIfg7WY
youtu.be/UD8uSIfg7WY
www.youtube.com/watch?v=2rLB...
www.youtube.com/watch?v=2rLB...
www.youtube.com/watch?v=plK4...
www.youtube.com/watch?v=plK4...
Watch on YouTube: www.youtube.com/watch?v=jA2I...
Watch on YouTube: www.youtube.com/watch?v=jA2I...
Further, measuring and modeling protein degradation is key to biological interpretations.
pubs.acs.org/doi/10.1021/...
Further, measuring and modeling protein degradation is key to biological interpretations.
pubs.acs.org/doi/10.1021/...
We began with a broad perspective:
◾️ A century of remarkable progress! Proteomics drove conceptual discoveries and medical treatments.
Listen to what's next!
Proteomics: The arc of progress
youtu.be/Sc2QLXb84XI?...
We began with a broad perspective:
◾️ A century of remarkable progress! Proteomics drove conceptual discoveries and medical treatments.
Listen to what's next!
Proteomics: The arc of progress
youtu.be/Sc2QLXb84XI?...
Read more: e11.bio/blog/prism
Over the next few weeks, we will post some throwback videos from the presentations. Let's start with opening remarks by PTI's Director, @slavov-n.bsky.social:
youtu.be/Sc2QLXb84XI
Over the next few weeks, we will post some throwback videos from the presentations. Let's start with opening remarks by PTI's Director, @slavov-n.bsky.social:
youtu.be/Sc2QLXb84XI
When developing AI models, we emphasize careful validation & rigorous benchmarking.
AI excels at supervised learning, and well annotated datasets can help unlock new AI capabilities.
🔗 www.nature.com/articles/s42...
OA 🔗 rdcu.be/eI4JW
When developing AI models, we emphasize careful validation & rigorous benchmarking.
I will present:
1⃣ New technology from @parallelsq.bsky.social:
parallelsq.org/blog/proteom...
2⃣ New biology from @slavovlab.bsky.social
biorxiv.org/content/10.1...
I will present:
1⃣ New technology from @parallelsq.bsky.social:
parallelsq.org/blog/proteom...
2⃣ New biology from @slavovlab.bsky.social
biorxiv.org/content/10.1...