Ayomikun Kade
kadeayomikun.bsky.social
Ayomikun Kade
@kadeayomikun.bsky.social
A PhD student at Freya Harrison’s lab in the School of Life Sciences, University of Warwick, UK
Reposted by Ayomikun Kade
#PhDone! Congratulations to Dr @tosinorababa.bsky.social, who passed his viva today 🎉
November 13, 2025 at 6:36 PM
Reposted by Ayomikun Kade
Low doses of tEDTA kill P. aeruginosa in models of chronic wound and CF lung #biofilm, but not in a model of endotracheal tube colonisation: preprint from a project led by @tosinorababa.bsky.social and implemented by a crack team of PhD students! #MicroSky www.biorxiv.org/content/10.1...
Low concentrations of tetrasodium EDTA cause significant killing of biofilm-associated P. aeruginosa in high validity models of chronic wound and CF lung infections but not in a model of endotracheal tube colonisation
Pseudomonas aeruginosa is a pathogen notorious for its antimicrobial resistance and is currently classified as a high-priority pathogen for which new drugs are needed. Tetrasodium EDTA (tEDTA) is one of the new antimicrobial compounds that have been shown to have good antibacterial and antibiofilm efficacy against P. aeruginosa. Due to the diversity and highly drug-tolerant nature of P. aeruginosa biofilms in different infection environments, it is important to carry out pre-clinical testing of new antibiofilm agents against this pathogen in media and models that accurately mimic diverse infection environments. In this study, we used different high validity media and biofilm models that mimic chronic wounds, endotracheal tubes, and cystic fibrosis lung infections to assess the efficacy of tEDTA against P. aeruginosa biofilms. We report that different infection environments influence the susceptibility of both planktonic and biofilm forms of P. aeruginosa to tEDTA. The highest tolerance to tEDTA was observed in the media and biofilm model that mimics the endotracheal tube environment. In conclusion, we show that although different infection environments influence the efficacy of tEDTA against P. aeruginosa biofilms, it has good potential for use as an alternative antimicrobial in treating P. aeruginosa-associated biofilm infections. ### Competing Interest Statement The authors have declared no competing interest.
www.biorxiv.org
November 10, 2025 at 10:21 AM
Reposted by Ayomikun Kade
Lovely work by @c-cornbill.bsky.social @kadeayomikun.bsky.social @nreddy.bsky.social @microbescience.bsky.social @tosinorababa.bsky.social, pooling their skills with lung, wound and endotracheal tube models to explore the potential of tetrasodium EDTA in different infection contexts #MicroSky
November 10, 2025 at 10:27 AM
Reposted by Ayomikun Kade
Combining antibiotics remains a promising approach to treat patients and to prevent the emergence of antimicrobial resistance – new COMMENT out now.

Read it here: rdcu.be/efaKQ

www.nature.com/articles/s41...
Combining antibiotics to tackle antimicrobial resistance
Nature Microbiology - Combining antibiotics remains a promising approach to treat patients and to prevent the emergence of antimicrobial resistance
rdcu.be
March 26, 2025 at 12:39 PM
Reposted by Ayomikun Kade
Infamous paper that popularized unproven COVID-19 treatment finally retracted

Study on hydroxychloroquine by Didier Raoult and colleagues gets pulled on ethical and scientific grounds
@cathleenogrady.bsky.social reports.

www.science.org/content/arti...
Infamous paper that popularized unproven COVID-19 treatment finally retracted
Study on hydroxychloroquine by Didier Raoult and colleagues gets pulled on ethical and scientific grounds
www.science.org
December 17, 2024 at 8:41 PM
Reposted by Ayomikun Kade
#Retraction by @plos.bsky.social
Reported to the journal in October 2015, but apparently the journal only recently contacted the authors, and now the data from this 2013 paper is no longer available.
So sad it took so long to contact the authors.
#ImageForensics
November 25, 2024 at 12:45 AM
Reposted by Ayomikun Kade
Was a pleasure writing this with @whiteleylab, excited to share it with the biofilm community!
rdcu.be/dQf4Z
Towards improved biofilm models
Nature Reviews Microbiology - In this Perspective, Rumbaugh and Whiteley explore the advantages and limitations of current medical biofilm models and outline a framework for quantitatively...
rdcu.be
August 7, 2024 at 11:34 PM
Reposted by Ayomikun Kade
our ancestors accomplished more, with less, against worse. stay locked in.
November 19, 2024 at 1:25 PM
Reposted by Ayomikun Kade
Here are some free/open-source sites for the preparation of scientific illustrations, including icon libraries: bioicons.com, scidraw.io, bioart.niaid.nih.gov, inkscape.org, biogdp.com, reactome.org/icon-lib
November 17, 2024 at 4:04 PM
Reposted by Ayomikun Kade
A review on "Bacterial Organelles in Iron Physiology" from Hualiang Pi et al.

Joe Neilands (a siderophore pioneer) once stated that Fe was too important for bacteria to export. Bacteria DO export Fe, but they can also store it in organelles.
#MicroSky

onlinelibrary.wiley.com/doi/10.1111/...
Bacterial Organelles in Iron Physiology
A proposed model of iron trafficking during ferrosome formation.
onlinelibrary.wiley.com
November 18, 2024 at 12:13 AM
Reposted by Ayomikun Kade
“If you’re below 45 years, no matter how ill, it is impossible for you to score high enough to be given priority scores on the list” - an exploration of systematic bias in the UK’s liver matching algorithm www.aisnakeoil.com/p/does-the-u...
Does the UK’s liver transplant matching algorithm systematically exclude younger patients?
Seemingly minor technical decisions can have life-or-death effects
www.aisnakeoil.com
November 17, 2024 at 9:14 AM
Reposted by Ayomikun Kade
Believe your eyes! Look at these beautiful figures of a ~70 year period in the US. Watch cases of measles, mumps, rubella, polio, pertussis, smallpox, hepatitis plummet with safe & effective immunizations! 🏆

#VaccinesWork #GetVaccinated #MedEd
#MedTwitter #MedSky

graphics.wsj.com/infectious-d...
Battling Infectious Diseases in the 20th Century: The Impact of Vaccines
The number of infected people, measured over 70-some years and across all 50 states and the District of Columbia, generally declined after vaccines were introduced.
graphics.wsj.com
November 16, 2024 at 3:01 PM
Reposted by Ayomikun Kade
In September the world lost one of the great biologists of our time: Joe Gall. He bridged the transition from the histology era of cell biology to our molecular present, contributing a remarkable set of insights in his 9 decades 1/n 🧪
rupress.org/jcb/article-...
November 16, 2024 at 1:28 PM
Reposted by Ayomikun Kade
SO EXCITED to share our recent work on dietary zinc deficiency worsening Acinetobacter baumannii pneumonia, out today with @natureportfolio.bsky.social!! Surprisingly, this is due at least in part to the allergic-type cytokine IL-13. SharedIt link: rdcu.be/d0h4h Eat your zinc rich foods! 🦪🫘🧀🥩🥜
Dietary zinc deficiency promotes Acinetobacter baumannii lung infection via IL-13 in mice
Nature Microbiology - Increased IL-13 drives increased bacterial dissemination and mortality following Acinetobacter baumannii lung infection of zinc-deficient mice and can be countered by...
rdcu.be
November 15, 2024 at 4:46 PM
Reposted by Ayomikun Kade
I am a terrible supervisor! @kadeayomikun.bsky.social is here too, he’s comparing biofilms grown in different infection models #MicroSky
November 15, 2024 at 7:04 PM
Reposted by Ayomikun Kade
Out in Nature Microbiology, we predicted phage-bacteria interactions in E. coli species using only genomic information.

Adsorption, not defense systems, is the main driver at this scale (relevant for a phage therapy context), leading to tailored cocktails!

www.nature.com/articles/s41...
🧵👇
Prediction of strain level phage–host interactions across the Escherichia genus using only genomic information - Nature Microbiology
Phage–host interactions are computationally predicted using only genomic information, highlighting future research directions and enabling generation of custom phage cocktails.
www.nature.com
November 5, 2024 at 10:08 AM
Reposted by Ayomikun Kade
My interview podcast on my research and how #bacteriophages can be used for treatment of human MDR infections.

open.spotify.com/episode/0UPr...
Bacteriophages, Biofilms, Biofouling and MDROs with Special Guest Phage Researcher and Scientist Atif Khan
You Make Me Sick! · Episode
open.spotify.com
November 11, 2024 at 10:07 AM
Reposted by Ayomikun Kade
'Tis the season ... of UK research fellowship interviews! Here are some tips & tricks to help you prepare - featuring a list of 100(!) common Q&A questions elisagranato.com/how-to-apply...
How to apply for a (UK) postdoc fellowship - Elisa Granato
How to apply for a (UK) postdoc fellowship Disclaimer: this guide was written based on my experience applying for (and being awarded) a BBSRC Discovery Fellowship in 2020/2021. Some of this might appl...
elisagranato.com
November 14, 2024 at 10:52 AM
Reposted by Ayomikun Kade
We’ve just published a comprehensive list of bioinformatics resources. Thanks to @kateduncan.bsky.social and @andytruman4.bsky.social for compiling this list: actinobase.org/index.php?ti...
Bioinformatics - ActinoBase
actinobase.org
November 14, 2024 at 11:34 AM