Johannes Debler
@jwdebler.bsky.social
Molecular Biologist / part time Bioinformatician, Nanopore enthusiast, Sci-Fi fiend, Wingsuit pilot
Reposted by Johannes Debler
Registrations for the Stromlo Plant Pathogen Conference #StromPath25 are rolling in fast and the program is now full!
Exciting lineup from Japan, Korea, USA, UK, NZ + strong local crew. Join us in Canberra — rego open until Nov 13.
Program available here tinyurl.com/3e3tx9j2
Exciting lineup from Japan, Korea, USA, UK, NZ + strong local crew. Join us in Canberra — rego open until Nov 13.
Program available here tinyurl.com/3e3tx9j2
10th Stromlo Plant Pathology Conference | wheatbiosecurity
tinyurl.com
October 30, 2025 at 7:02 AM
Registrations for the Stromlo Plant Pathogen Conference #StromPath25 are rolling in fast and the program is now full!
Exciting lineup from Japan, Korea, USA, UK, NZ + strong local crew. Join us in Canberra — rego open until Nov 13.
Program available here tinyurl.com/3e3tx9j2
Exciting lineup from Japan, Korea, USA, UK, NZ + strong local crew. Join us in Canberra — rego open until Nov 13.
Program available here tinyurl.com/3e3tx9j2
Reposted by Johannes Debler
@tobybarilbio.bsky.social and I are very excited to release MycoMobilome! A very extensive effort to discover, QC and annotate TEs across the fungal kingdom.
👉 Ready-to-use for your own genome with a simple tutorial!
👉 Metadata about TEs discovered in your genome!
👉 Contribute and get recognition!
👉 Ready-to-use for your own genome with a simple tutorial!
👉 Metadata about TEs discovered in your genome!
👉 Contribute and get recognition!
1/ Ever needed to annotate TEs in a fungal genome, but didn't know where to start?
We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!
www.biorxiv.org/content/10.1...
We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!
www.biorxiv.org/content/10.1...
October 29, 2025 at 4:32 PM
@tobybarilbio.bsky.social and I are very excited to release MycoMobilome! A very extensive effort to discover, QC and annotate TEs across the fungal kingdom.
👉 Ready-to-use for your own genome with a simple tutorial!
👉 Metadata about TEs discovered in your genome!
👉 Contribute and get recognition!
👉 Ready-to-use for your own genome with a simple tutorial!
👉 Metadata about TEs discovered in your genome!
👉 Contribute and get recognition!
Well hello there "entity" in yet another species 😎
September 23, 2025 at 10:14 PM
Well hello there "entity" in yet another species 😎
@mcdonaldmeganc.bsky.social Meagon! I hear congratulations are in order! All the best 😊
September 19, 2025 at 2:35 PM
@mcdonaldmeganc.bsky.social Meagon! I hear congratulations are in order! All the best 😊
Reposted by Johannes Debler
Incredible session from Professor Peter Solomon. Engaging and highly relevant to Australia’s wheat and plant pathogen landscape.
#CBSMWA #CBSMWA2025
#CBSMWA #CBSMWA2025
September 19, 2025 at 4:07 AM
Incredible session from Professor Peter Solomon. Engaging and highly relevant to Australia’s wheat and plant pathogen landscape.
#CBSMWA #CBSMWA2025
#CBSMWA #CBSMWA2025
Dr. @jamespblloyd.bsky.social and @theccdm.bsky.social Dr. Liz Czislowski wrapping up the Biodiversity session at @cbsmwa.bsky.social with synthetic gene circuits for plants in space and novel nucleic acid based nanoparticle fungicides
September 19, 2025 at 8:13 AM
Dr. @jamespblloyd.bsky.social and @theccdm.bsky.social Dr. Liz Czislowski wrapping up the Biodiversity session at @cbsmwa.bsky.social with synthetic gene circuits for plants in space and novel nucleic acid based nanoparticle fungicides
Having fun at @cbsmwa.bsky.social presenting work on "The Entity", a circular genetic element we keep finding in unrelated fungal plant pathogens. #cbsmwa @theccdm.bsky.social
September 19, 2025 at 4:49 AM
Having fun at @cbsmwa.bsky.social presenting work on "The Entity", a circular genetic element we keep finding in unrelated fungal plant pathogens. #cbsmwa @theccdm.bsky.social
Come see Peter at #CBSMWA on Friday and at @theccdm.bsky.social on Thursday :-)
Excited to be Plenary Speaker at the Combined Biological Sciences Meeting in Western Australia on Sept 19 at UWA! I’ll share a novel plant immunity pathway + a few career reflections. Can’t wait to reconnect with WA friends + hear top biology from the west! cbsmwa.au @cbsmwa.bsky.social #CBSM2025
Combined Biological Sciences Meeting
cbsmwa.au
September 16, 2025 at 1:04 AM
Come see Peter at #CBSMWA on Friday and at @theccdm.bsky.social on Thursday :-)
Such a fun little conference!
September 4, 2025 at 9:13 PM
Such a fun little conference!
Reposted by Johannes Debler
Registrations are rolling in for the 2025 Stromlo Plant Pathology meeting in Canberra (Nov 27–28)! Secure your spot! Speakers: @yasukadota.bsky.social, Cecille Segonzac, @thamlab.bsky.social, @yichangsung.bsky.social, Tek Tay & @danielsyu.bsky.social. Register at tinyurl.com/3e3tx9j2
#strompath25
#strompath25
10th Stromlo Plant Pathology Conference | wheatbiosecurity
tinyurl.com
August 20, 2025 at 4:53 AM
Registrations are rolling in for the 2025 Stromlo Plant Pathology meeting in Canberra (Nov 27–28)! Secure your spot! Speakers: @yasukadota.bsky.social, Cecille Segonzac, @thamlab.bsky.social, @yichangsung.bsky.social, Tek Tay & @danielsyu.bsky.social. Register at tinyurl.com/3e3tx9j2
#strompath25
#strompath25
Reposted by Johannes Debler
Join us in our CBSM WA 2025 Biodiversity session with invited speaker Dr James PB Lloyd. His talk will focus on the threat of climate change to our global food security and the potential for programmable genetic systems as a solution.
August 19, 2025 at 3:51 AM
Join us in our CBSM WA 2025 Biodiversity session with invited speaker Dr James PB Lloyd. His talk will focus on the threat of climate change to our global food security and the potential for programmable genetic systems as a solution.
West Australians, come join us at CBSM 2025!
Are you working on biological science research and want the opportunity to share it at CBSM 2025?
Abstract submissions due this Friday! cbsmwa.au/conference/a...
Abstract submissions due this Friday! cbsmwa.au/conference/a...
July 30, 2025 at 9:46 AM
West Australians, come join us at CBSM 2025!
Reposted by Johannes Debler
At CBSM WA in 2024 we heard from renowned parasitologist Prof Shookofeh Shamsi. Her presentation explored how overlooking parasites can lead to incomplete conclusions about biodiversity. Prof. Shamsi's vision is to create a world where professionals and public are well-informed about parasites.
July 28, 2025 at 2:13 AM
At CBSM WA in 2024 we heard from renowned parasitologist Prof Shookofeh Shamsi. Her presentation explored how overlooking parasites can lead to incomplete conclusions about biodiversity. Prof. Shamsi's vision is to create a world where professionals and public are well-informed about parasites.
Reposted by Johannes Debler
The CBSM 2024 trade exhibit provided students and researchers the opportunity to create meaningful connections with industry and to discuss the latest and greatest technology available!
Make sure to check out the trade exhibit at the 2025 meeting!
Make sure to check out the trade exhibit at the 2025 meeting!
July 28, 2025 at 2:10 AM
The CBSM 2024 trade exhibit provided students and researchers the opportunity to create meaningful connections with industry and to discuss the latest and greatest technology available!
Make sure to check out the trade exhibit at the 2025 meeting!
Make sure to check out the trade exhibit at the 2025 meeting!
Reposted by Johannes Debler
#PlantScience colleagues, please think twice before working with the new Springer Nature Discover branded journals. And then don't.
New from The Strain Team:
🎊 Springer Nature Discovers MDPI 🎊
Springer Nature has spawned a copycat journal series called "Discover" mimicking #MDPI journal titles and citation behaviours. We even made a browser game to prove it (see 🔗).
Gross! 😀 1/n
#ResearchIntegrity #SciPub #AcademicSky
🎊 Springer Nature Discovers MDPI 🎊
Springer Nature has spawned a copycat journal series called "Discover" mimicking #MDPI journal titles and citation behaviours. We even made a browser game to prove it (see 🔗).
Gross! 😀 1/n
#ResearchIntegrity #SciPub #AcademicSky
Spinger Nature Discovers MDPI – The Strain on Scientific Publishing
Home page for the paper ‘The Strain on Scientific Publishing’ by Mark A Hanson, Dan Brockington, Paolo Crosetto and Pablo Gomez Barreiro
the-strain-on-scientific-publishing.github.io
June 10, 2025 at 7:55 AM
#PlantScience colleagues, please think twice before working with the new Springer Nature Discover branded journals. And then don't.
Reposted by Johannes Debler
I've never seen it so well put before.
May 23, 2025 at 12:02 AM
I've never seen it so well put before.
Slaps roof of PromethION "this bad boy can sequence sooo many genomes!" #nanoporeconf
May 21, 2025 at 1:47 PM
Slaps roof of PromethION "this bad boy can sequence sooo many genomes!" #nanoporeconf
Make it sequence! #nanoporeconf Jean-Luc inspecting the new Enterprise.... I mean minION Mk D 😊
May 21, 2025 at 12:16 PM
Make it sequence! #nanoporeconf Jean-Luc inspecting the new Enterprise.... I mean minION Mk D 😊
Reality outpacing Science Fiction in terms of compute power. I'm also a sucker for Star Trek references 🖖 #nanoporeconf
May 21, 2025 at 9:35 AM
Reality outpacing Science Fiction in terms of compute power. I'm also a sucker for Star Trek references 🖖 #nanoporeconf
Gave my seminar capping off my PhD journey and had a bunch of Easter eggs in it. Looks like Adam found them all 😎🤣 rstats.me/@adamhsparks...
Adam H. Sparks :rstats: (@adamhsparks@rstats.me)
@JWDebler@genomic.social presenting his Milestone 3 just Rickrolled the entire audience one slide at a time with a single word per side in the lower right footer. 🤣
rstats.me
May 18, 2025 at 11:29 PM
Gave my seminar capping off my PhD journey and had a bunch of Easter eggs in it. Looks like Adam found them all 😎🤣 rstats.me/@adamhsparks...
Reposted by Johannes Debler
longcallD is a new variant caller for genomic long reads. It jointly calls phased small and structural variants. Single binary, one command line for the whole process. Comparable accuracy to mainstream callers. Great work by Yan Gao. github.com/yangao07/lon...
GitHub - yangao07/longcallD: A local-haplotagging-based small and structural variant caller
A local-haplotagging-based small and structural variant caller - yangao07/longcallD
github.com
March 24, 2025 at 4:53 PM
longcallD is a new variant caller for genomic long reads. It jointly calls phased small and structural variants. Single binary, one command line for the whole process. Comparable accuracy to mainstream callers. Great work by Yan Gao. github.com/yangao07/lon...
Wow, writing scripts with Cursor is great! Been chatting with it for about two hours now to create a little side project that I'd never be able to otherwise. #vibecoding
March 15, 2025 at 1:26 PM
Wow, writing scripts with Cursor is great! Been chatting with it for about two hours now to create a little side project that I'd never be able to otherwise. #vibecoding