Johann Confais
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johannconfais.bsky.social
Johann Confais
@johannconfais.bsky.social
690 followers 710 following 10 posts
Bioinformatics @urgi-inrae.bsky.social

Interested in #Genomics, #Evolution, #Transposons, Repeat annotation, #Pangenomic, #KnowledgeGraph

https://eng-urgi.versailles-grignon.hub.inrae.fr/about-us/team/johann-confais

join the TEhub : @tehub.bsky.social
Posts Replies Media Videos
Reposted by Johann Confais
urgi-inrae.bsky.social
Internship position open at INRAE-URGI for 2026, more details available here www.sfbi.fr/emplois/offr...
Optimisation de la classification automatique des éléments transposables par des approches d’IA | SFBI Société Française de Bioinformatique
Emploi en bioinformatique à None Stage Stage M2
www.sfbi.fr
October 29, 2025 at 9:37 AM
johannconfais.bsky.social
🚨 📢 PhD offer in a nice place with nice people.
ritarebollo.bsky.social Rita Rebollo @ritarebollo.bsky.social · Sep 16
Hi! We are looking for a PhD to work on the cross talk between transposable elements, insects and intracellular bacteria on the bioinformatics side. The PhD would be supervised by @mariefablet.bsky.social and myself along with @nicolasparisot.bsky.social Deadline December 2025! Please share! #tesky
September 24, 2025 at 1:59 PM
Reposted by Johann Confais
cornilleamand.bsky.social
JOIN US WEDNESDAY, Aug. 20, 2025, @eseb2025.bsky.social ! 🚪 Room 120–121 🕑 2:00–5:40 PM
🔥 Satellite Symposium 🔥 “Ecological Genomics of Coevolution”
Keynote speakers:
⭐ Ellen Leffer
⭐Joy Bergekson @bergelsonlab.bsky.social
💡 Young Researcher Talks on host–pathogen dynamics, symbiosis, adaptation!
August 18, 2025 at 6:33 AM
Reposted by Johann Confais
marienewan.bsky.social
Venez découvrir #REPET, un outil de détection, de classification et d'annotation d'éléments transposables en live avec Etienne Bardet en amphi E @jobim2025.bsky.social

@urgi-inrae.bsky.social

#JOBIM2025 #URGI #INRAE
July 10, 2025 at 10:11 AM
Reposted by Johann Confais
marienewan.bsky.social
Venez me voir au poster 2, pour découvrir l'URGI, une plateforme bio-informatique @urgi-inrae.bsky.social
@jobim2025.bsky.social
#JOBIM2025 #URGI #INRAE
July 10, 2025 at 9:40 AM
johannconfais.bsky.social
Vous êtes à #JOBIM2025 et vous avez manquez le poster de @marienewan.bsky.social sur la nouvelle version de #REPET ? Rassurez vous une demo est organisé aujourd'hui à midi en amphi E. Vous découvrirez toutes les évolutions mises en place pour vous faciliter l'annotation des #transposons
July 10, 2025 at 6:04 AM
Reposted by Johann Confais
bioinfomics.bsky.social
Notre plateforme de Jouy recrute pour contribuer au développement de Siduri, l'entrepôt de données de Ferments du Futur !
inrae-migale.bsky.social INRAE Migale @inrae-migale.bsky.social · May 20
Un poste de contractuel (jusqu'à 7 ans possible) en développement de système d'information est ouvert au sein de notre équipe, dans le cadre du Grand Défi Ferments du Futur.
📅Candidature jusqu'au 20/06
Plus d'infos sur jobs.inrae.fr/ot-25893
Ingénieur-e en développement de systèmes d’information
Votre mission, les objectifs qui vous serons fixés et les activités qui en découlent s’inscrivent principalement dans le cadre du projet Grand Défi Ferments du Futur, dont la durée prévisionnelle est ...
jobs.inrae.fr
May 20, 2025 at 5:06 PM
Reposted by Johann Confais
inrae-maiage.bsky.social
Trainings of the “Cycle bioinformatique par la pratique” 2025

Tidyverse : documents.migale.inrae.fr/posts/traini...

Python : documents.migale.inrae.fr/posts/traini...
May 6, 2025 at 9:12 AM
Reposted by Johann Confais
dfam.bsky.social
Today we released Dfam 3.9 with many new community submissions and the result of a thorough curation and update of the Drosophila Melanogaster library. www.dfam.org (release notes: www.dfam.org/releases/Dfa...)
Dfam
Open database of transposable elements and repetitive DNA families
www.dfam.org
March 10, 2025 at 9:03 PM
Reposted by Johann Confais
biorxiv-bioinfo.bsky.social
GrAnnoT, a tool for effecient and reliable annotation transfer through pangenome graph https://www.biorxiv.org/content/10.1101/2025.02.26.640337v1
March 3, 2025 at 3:48 AM
johannconfais.bsky.social
A great opportunity in a nice place 👇
urgi-inrae.bsky.social URGI @urgi-inrae.bsky.social · Feb 21
🚨📢 We are hiring a postdoc position at URGI in bioinformatics genomics. All details are available here urgi.versailles.inrae.fr/About-us/New...
Postdoc position - URGI
Content Management System
urgi.versailles.inrae.fr
February 21, 2025 at 10:40 PM
Reposted by Johann Confais
inrae-migale.bsky.social
Besoin de vous former à #Python ? Notre cycle de formation "Bioinformatique par la pratique" propose ce module introductif à Jouy-en-Josas sur 2 jours (31 mars, 1er avril).
📝 Inscriptions et programme sur documents.migale.inrae.fr/trainings.html
February 13, 2025 at 9:34 PM
Reposted by Johann Confais
ritarebollo.bsky.social
A couple of months ago I tried the @peercommunityin.bsky.social publishing system & I can only recommend it (pun intended). Please see below to change how we publish science 1/n
January 31, 2025 at 10:36 AM
Reposted by Johann Confais
ccilelorrain.bsky.social
Dive into the massive genomes of plant pathogenic rust fungi! 🌿🍄
Our study reveals how ancestral & recent bursts of transposition have shaped these remarkable genomes.
👏 Congrats to @Emma______C on her 1st PhD paper!
🙌 @SebbyRust, Emmanuelle Morin

www.biorxiv.org/content/10.1...
www.biorxiv.org
January 14, 2025 at 3:56 PM
Reposted by Johann Confais
clementgoubert.bsky.social
The great @johannconfais.bsky.social on a reference-free approach (panREPET) to annotate #Transposons in #pangenomes 🧬
January 14, 2025 at 7:24 PM
Reposted by Johann Confais
urgi-inrae.bsky.social
Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach
January 14, 2025 at 7:41 PM
johannconfais.bsky.social
REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32
forgemia.inra.fr/urgi-anagen/...
January 13, 2025 at 8:59 PM
johannconfais.bsky.social
Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes
#PAG32
github.com/cgroza/Graff...
January 13, 2025 at 2:14 AM
Reposted by Johann Confais
nico971.bsky.social
@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element
January 12, 2025 at 11:28 PM
Reposted by Johann Confais
clementgoubert.bsky.social
#PAG32 I'd bet that every genome studied at PAG has a least 1 #Transposon, if not thousands! Find us on Sunday for an exciting session on #mobileDNA!
January 10, 2025 at 10:06 PM
Reposted by Johann Confais
urgi-inrae.bsky.social
Great presentation from Michael Alaux in #BrAPI session #PAG2025, how the french community use BrAPI to share data between several tools
January 12, 2025 at 12:24 AM
johannconfais.bsky.social
Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32

urgi.versailles.inra.fr/repetdb/begi...
January 11, 2025 at 9:45 PM
Reposted by Johann Confais
amazeld.bsky.social
We are opening a call for applications 2025 – Creation of new junior research groups at the Institut Pasteur in Paris @pasteur.fr all details on our web site : research.pasteur.fr/en/call/call...
Call for applications 2025 – Creation of new research groups at the Institut Pasteur | Research - Institut Pasteur
research.pasteur.fr
December 8, 2024 at 3:04 PM
Reposted by Johann Confais
toheitka.bsky.social
Scraping who is on the platform working on #TransposableElements or other types of #RepetitiveDNA

Have fun!

go.bsky.app/7t5GQAP
November 10, 2024 at 10:47 PM
Reposted by Johann Confais
nico971.bsky.social
Et c est reparti, 2e journée de l atelier pangénomique
@inrae-france.bsky.social
à Versailles du SaPI PanAnnot #CATI_GREP
#CATI_BARIC @johannconfais.bsky.social
On discute des outils de pangénomique et de leur impact sur nos thématiques de travail.
July 4, 2024 at 7:41 AM