Gisela Gabernet
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ggabernet.bsky.social
Gisela Gabernet
@ggabernet.bsky.social
Computational Immunologist @Yale School of Medicine
Join us for the Immcantation Users meeting this Thursday, featuring interesting talks on scientific projects including BCR and TCR data analysis using Immcantation! It's not too late to register ✍️
🧬Immcantation.org user or interested in #AIRRseq analysis to study infection, vaccination, clonal lineages & more? Join the 2026 Immcantation Users Group Meeting! 📅 Jan 22, 2026 ⏰ 10AM–1:30PM ET 💻 Free & Virtual
👉 Info: immcantation.github.io/users-meetin...
@immcantation.bsky.social #immunosky
January 20, 2026 at 7:22 PM
Do you want to share your research using Immcantation? Abstract submission for the Immcantation Users Meeting 2026 is now open until October 1st!
🚨 Immcantation.org user or interested in #Bcell repertoire analysis?
🗓️ Join the FREE virtual 2026 Immcantation Users Group Meeting
📅 Jan 22, 2026 | ⏰ 10AM–1:30PM ET
📢 Abstracts due Oct 1, 2025
🔗 immcantation.github.io/users-meeting/2026

#AIRRseq #Immcantation
September 9, 2025 at 1:34 PM
Interested in analyzing BCR / TCR single-cell or bulk datasets? Join the hands-on training on using nf-core/airrflow, a Nextflow pipeline to process start-to-finish AIRRseq data using the Immcantation framework.

🕑 June 12th 10-11:30 ET
💻 Virtual
💸 It's free!

Registration: nf-co.re/events/2025/...
May 28, 2025 at 1:21 AM
At #AAI2025 and interested in high-throughput BCR/TCR single cell and bulk data analysis? Come talk to me at poster #408 from 14:15 to 15:30! I’ll be presenting nf-core/airrflow, a Nextflow workflow using the Immcantation framework @immcantation.bsky.social @nf-co.re
May 4, 2025 at 5:16 PM
Reposted by Gisela Gabernet
Do you analyze large BCR and TCR sequencing datasets?

Answer our survey for improving nf-core/airrflow, a Nextflow pipeline to analyze bulk and single-cell AIRRseq data (doi.org/10.1371/jour...). We’re interested in your opinion on useful new features!

yalesurvey.ca1.qualtrics.com/jfe/form/SV_...
nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework
Author summary We have created nf-core/airrflow, a workflow to help researchers study the immune system in healthy and disease states, such as infections, autoimmunity, and cancer. The adaptive immune...
doi.org
March 31, 2025 at 2:41 PM
Reposted by Gisela Gabernet
Persistence of spike protein at the skull-meninges-brain axis may contribute to the neurological sequelae of COVID-19

Some unrest and abuse about this paper- Parts of the pre-print have been abused previously. What does it show?

www.cell.com/cell-ho...
1/10
November 30, 2024 at 9:03 AM
Reposted by Gisela Gabernet
Doing good science is 90% finding a science buddy to constantly talk to about the project.
November 9, 2024 at 10:53 PM
Reposted by Gisela Gabernet
Inspired by @rodrahimi.bsky.social 's noble efforts linking immunologists together over here, let's try and get more specifically TCR/BCR/AIRR/repertoire chat going with this starter park
go.bsky.app/Gi2dcGd
Drop me a beep to get added or suggest others!
November 18, 2024 at 5:21 AM