F. Javier Rubio
@fjrubio.bsky.social
Lecturer at the Department of Statistical Science of UCL. All opinions my own. 🇲🇽🇬🇧
https://sites.google.com/site/fjavierrubio67/
#rstats #JuliaLang #Bayesian #Statistics #Biostatistics
https://sites.google.com/site/fjavierrubio67/
#rstats #JuliaLang #Bayesian #Statistics #Biostatistics
Reposted by F. Javier Rubio
How can we make cancer care in England both equitable and sustainable for the NHS? 🤔
Join researchers, patient advocates & experts for The Great Debate. This event is part of London Global Cancer Week, co-hosted ICON & the Institute of Cancer Policy @kingscollegelondon.bsky.social
👉 bit.ly/43eRxiY
Join researchers, patient advocates & experts for The Great Debate. This event is part of London Global Cancer Week, co-hosted ICON & the Institute of Cancer Policy @kingscollegelondon.bsky.social
👉 bit.ly/43eRxiY
The great debate: innovation, sustainability & equity in cancer care | LSHTM
The great debate: is delivering innovation compatible with sustainable and equitable cancer care?The current state of cancer care in England is a regular news feature, whether its long waiting
bit.ly
November 6, 2025 at 9:23 AM
How can we make cancer care in England both equitable and sustainable for the NHS? 🤔
Join researchers, patient advocates & experts for The Great Debate. This event is part of London Global Cancer Week, co-hosted ICON & the Institute of Cancer Policy @kingscollegelondon.bsky.social
👉 bit.ly/43eRxiY
Join researchers, patient advocates & experts for The Great Debate. This event is part of London Global Cancer Week, co-hosted ICON & the Institute of Cancer Policy @kingscollegelondon.bsky.social
👉 bit.ly/43eRxiY
Reposted by F. Javier Rubio
Journal submissions got you stressed? Daniela Witten of the University of Washington shares advice about editing and dealing with rejection when submitting papers to academic journals. magazine.amstat.org/...
November 6, 2025 at 7:00 PM
Journal submissions got you stressed? Daniela Witten of the University of Washington shares advice about editing and dealing with rejection when submitting papers to academic journals. magazine.amstat.org/...
Reposted by F. Javier Rubio
English Indices of Deprivation 2025 (IoD25) and Index of Multiple Deprivation (IMD25) are published today. This is an update in the series, following on from the 2019 #deprivation indices.
UK Government website:
www.gov.uk/government/s...
UK Government website:
www.gov.uk/government/s...
English indices of deprivation 2025
Statistics on relative deprivation in small areas in England. Further details are provided at the bottom of this page and in the FAQ document.
www.gov.uk
October 30, 2025 at 2:40 PM
English Indices of Deprivation 2025 (IoD25) and Index of Multiple Deprivation (IMD25) are published today. This is an update in the series, following on from the 2019 #deprivation indices.
UK Government website:
www.gov.uk/government/s...
UK Government website:
www.gov.uk/government/s...
📘 An interesting initial book release by David Rossell on variable and model selection:
👉 davidrusi.github.io/modelSelecti...
it provides accessible material for students learning the fundamentals of high-dimensional model selection, and it documents the R package modelSelection (formerly mombf).
👉 davidrusi.github.io/modelSelecti...
it provides accessible material for students learning the fundamentals of high-dimensional model selection, and it documents the R package modelSelection (formerly mombf).
High-dimensional model choice. A hands-on take
High-dimensional model selection with the modelSelection R package
davidrusi.github.io
October 23, 2025 at 7:59 AM
📘 An interesting initial book release by David Rossell on variable and model selection:
👉 davidrusi.github.io/modelSelecti...
it provides accessible material for students learning the fundamentals of high-dimensional model selection, and it documents the R package modelSelection (formerly mombf).
👉 davidrusi.github.io/modelSelecti...
it provides accessible material for students learning the fundamentals of high-dimensional model selection, and it documents the R package modelSelection (formerly mombf).
New paper with E.O. Ogundimu and our PhD student Adam Iqbal, just accepted in Bayesian Analysis
Bayesian Variable Selection Under Sample Selection and Model Misspecification
doi.org/10.1214/25-B...
R code and data can be found at:
github.com/adam-iqbal/b...
Bayesian Variable Selection Under Sample Selection and Model Misspecification
doi.org/10.1214/25-B...
R code and data can be found at:
github.com/adam-iqbal/b...
Bayesian Variable Selection Under Sample Selection and Model Misspecification
Sample selection bias arises when missingness in the outcome of interest correlates with the outcome itself, leading to non-randomly selected samples. A common approach to correct bias from sample selection is to use sample selection models that jointly model the selection mechanism and the outcome of interest. Formulating these models typically rely on exclusion restrictions (variables that are predictors of selection but not appearing in the outcome equation) to ensure identifiability of the parameters. However, the choice of exclusion restrictions often depends on heuristics or expert judgment, potentially leading to the inclusion of irrelevant variables or the omission of important ones. Additionally, distributional misspecification and omitted variable bias are frequent challenges in this framework. To formally address these issues, we propose a Bayesian variable selection (BVS) methodology that incorporates both local priors (LPs) and non-local priors (NLPs), enabling the identification of variables with predictive power for the outcome and selection processes. We develop computational tools to conduct BVS in sample selection models based on a Laplace approximation of the marginal likelihood, and characterize the resulting Bayes factor rates under model misspecification. We establish model selection consistency for both classes of priors, showing that the proposed methodology correctly identifies active variables for both the selection process and outcome process asymptotically. The priors are calibrated to account for the possibility of distributional misspecification and omitted variable bias. We present a simulation study and real-data applications to explore the finite-sample effects of model misspecification on BVS. We compare the performance of the proposed methodology against BVS based on spike-and-slab (SS) priors and the Adaptive LASSO (ALASSO), an adaptive weighting of the least absolute shrinkage and selection operator (LASSO).
doi.org
October 15, 2025 at 1:41 PM
New paper with E.O. Ogundimu and our PhD student Adam Iqbal, just accepted in Bayesian Analysis
Bayesian Variable Selection Under Sample Selection and Model Misspecification
doi.org/10.1214/25-B...
R code and data can be found at:
github.com/adam-iqbal/b...
Bayesian Variable Selection Under Sample Selection and Model Misspecification
doi.org/10.1214/25-B...
R code and data can be found at:
github.com/adam-iqbal/b...
New R package PTCMGH: The PTCMGH R package implements promotion time cure models with a general hazard structure. The package, along with a tutorial for simulating and fitting these models, can be found at:
github.com/FJRubio67/PT...
rpubs.com/FJRubio/PTCMGH
#rstats #survival
github.com/FJRubio67/PT...
rpubs.com/FJRubio/PTCMGH
#rstats #survival
GitHub - FJRubio67/PTCMGH: Promotion Time Cure Models with a General Hazard structure
Promotion Time Cure Models with a General Hazard structure - FJRubio67/PTCMGH
github.com
September 24, 2025 at 8:40 AM
New R package PTCMGH: The PTCMGH R package implements promotion time cure models with a general hazard structure. The package, along with a tutorial for simulating and fitting these models, can be found at:
github.com/FJRubio67/PT...
rpubs.com/FJRubio/PTCMGH
#rstats #survival
github.com/FJRubio67/PT...
rpubs.com/FJRubio/PTCMGH
#rstats #survival
Reposted by F. Javier Rubio
The new Bayesian Social Sciences section of @isba-bayesian.bsky.social has just been created: bss-isba.github.io. The committee is myself as chair, @robinryder.bsky.social, chair elect from 2027, @nialfriel.bsky.social, program chair, @monjalexander.bsky.social, Treasurer, EJWagenmakers, Secretary.
Home - BSS-ISBA
bss-isba.github.io
September 22, 2025 at 9:21 AM
The new Bayesian Social Sciences section of @isba-bayesian.bsky.social has just been created: bss-isba.github.io. The committee is myself as chair, @robinryder.bsky.social, chair elect from 2027, @nialfriel.bsky.social, program chair, @monjalexander.bsky.social, Treasurer, EJWagenmakers, Secretary.
Reposted by F. Javier Rubio
DifferentialEquations.jl is many things, and lots of people only use a small portion of it. Check out the JuliaCon 2025 workshop: introduces many aspects of the packages that the developers feel are underutilized and under-understood!
#julialang #sciml
www.youtube.com/watch?v=lSGF...
#julialang #sciml
www.youtube.com/watch?v=lSGF...
A Deep Dive Into DifferentialEquations.jl | JuliaCon Global 2025 | Rackauckas, Smith
YouTube video by The Julia Programming Language
www.youtube.com
September 19, 2025 at 8:06 AM
DifferentialEquations.jl is many things, and lots of people only use a small portion of it. Check out the JuliaCon 2025 workshop: introduces many aspects of the packages that the developers feel are underutilized and under-understood!
#julialang #sciml
www.youtube.com/watch?v=lSGF...
#julialang #sciml
www.youtube.com/watch?v=lSGF...
Reposted by F. Javier Rubio
Reposted by F. Javier Rubio
Handbook of Markov Chain Monte Carlo, 2nd Edition. Radu V. Craiu, Dootika Vats, Galin Jones, Steve Brooks, Andrew Gelman, Xiao-Li Meng (eds.) Chapman & Hall 2026, 680 Pages. www.routledge.com/Handbook-of-...
Handbook of Markov Chain Monte Carlo
This thoroughly revised and expanded second edition of the Handbook of Markov Chain Monte Carlo reflects the dramatic evolution of MCMC methods since the publication of the first edition. With the add...
www.routledge.com
September 13, 2025 at 5:39 AM
Handbook of Markov Chain Monte Carlo, 2nd Edition. Radu V. Craiu, Dootika Vats, Galin Jones, Steve Brooks, Andrew Gelman, Xiao-Li Meng (eds.) Chapman & Hall 2026, 680 Pages. www.routledge.com/Handbook-of-...
Reposted by F. Javier Rubio
The subsequent webinar will be on:
📅 November 5, 2025 (4:00 PM UTC | 11:00 AM EST | 5:00 PM CET)
“Model Uncertainty and Missing Data: An Objective Bayesian Perspective”
by G. García-Donato, M. Eugenia Castellanos, S. Cabras, A. Quirós, and A. Forte
doi.org/10.1214/25-B...
📅 November 5, 2025 (4:00 PM UTC | 11:00 AM EST | 5:00 PM CET)
“Model Uncertainty and Missing Data: An Objective Bayesian Perspective”
by G. García-Donato, M. Eugenia Castellanos, S. Cabras, A. Quirós, and A. Forte
doi.org/10.1214/25-B...
Model Uncertainty and Missing Data: An Objective Bayesian Perspective
The interplay between missing data and model uncertainty—two classic statistical problems—leads to primary questions that we formally address from an objective Bayesian perspective. For the general regression problem, we discuss the probabilistic justification of Rubin’s rules applied to the usual components of Bayesian variable selection, arguing that prior predictive marginals should be central to the pursued methodology. In the regression settings, we explore the conditions of prior distributions that make the missing data mechanism ignorable, provided that it is missing at random or completely at random. Moreover, when comparing multiple linear models, we provide a complete methodology for dealing with special cases, such as variable selection or uncertainty regarding model errors. In numerous simulation experiments, we demonstrate that our method outperforms or equals others, in consistently producing results close to those obtained using the full dataset. In general, the difference increases with the percentage of missing data and the correlation between the variables used for imputation. Finally, we summarize possible directions for future research.
doi.org
September 8, 2025 at 8:00 PM
The subsequent webinar will be on:
📅 November 5, 2025 (4:00 PM UTC | 11:00 AM EST | 5:00 PM CET)
“Model Uncertainty and Missing Data: An Objective Bayesian Perspective”
by G. García-Donato, M. Eugenia Castellanos, S. Cabras, A. Quirós, and A. Forte
doi.org/10.1214/25-B...
📅 November 5, 2025 (4:00 PM UTC | 11:00 AM EST | 5:00 PM CET)
“Model Uncertainty and Missing Data: An Objective Bayesian Perspective”
by G. García-Donato, M. Eugenia Castellanos, S. Cabras, A. Quirós, and A. Forte
doi.org/10.1214/25-B...
Reposted by F. Javier Rubio
The 𝐈𝐧𝐭𝐞𝐫𝐧𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐒𝐨𝐜𝐢𝐞𝐭𝐲 𝐟𝐨𝐫 𝐁𝐚𝐲𝐞𝐬𝐢𝐚𝐧 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬 (𝐈𝐒𝐁𝐀) was founded in 1992 to promote the development and application of Bayesian analysis.
𝘐𝘚𝘉𝘈 𝘱𝘳𝘰𝘷𝘪𝘥𝘦𝘴 𝘢𝘯 𝘪𝘯𝘵𝘦𝘳𝘯𝘢𝘵𝘪𝘰𝘯𝘢𝘭 𝘤𝘰𝘮𝘮𝘶𝘯𝘪𝘵𝘺 𝘧𝘰𝘳 𝘵𝘩𝘰𝘴𝘦 𝘪𝘯𝘵𝘦𝘳𝘦𝘴𝘵𝘦𝘥 𝘪𝘯 𝘉𝘢𝘺𝘦𝘴𝘪𝘢𝘯 𝘢𝘯𝘢𝘭𝘺𝘴𝘪𝘴 𝘢𝘯𝘥 𝘪𝘵𝘴 𝘢𝘱𝘱𝘭𝘪𝘤𝘢𝘵𝘪𝘰𝘯𝘴.
Find us across the web:
linktr.ee/ISBAbayesian
𝘐𝘚𝘉𝘈 𝘱𝘳𝘰𝘷𝘪𝘥𝘦𝘴 𝘢𝘯 𝘪𝘯𝘵𝘦𝘳𝘯𝘢𝘵𝘪𝘰𝘯𝘢𝘭 𝘤𝘰𝘮𝘮𝘶𝘯𝘪𝘵𝘺 𝘧𝘰𝘳 𝘵𝘩𝘰𝘴𝘦 𝘪𝘯𝘵𝘦𝘳𝘦𝘴𝘵𝘦𝘥 𝘪𝘯 𝘉𝘢𝘺𝘦𝘴𝘪𝘢𝘯 𝘢𝘯𝘢𝘭𝘺𝘴𝘪𝘴 𝘢𝘯𝘥 𝘪𝘵𝘴 𝘢𝘱𝘱𝘭𝘪𝘤𝘢𝘵𝘪𝘰𝘯𝘴.
Find us across the web:
linktr.ee/ISBAbayesian
International Society for Bayesian Analysis | The International Society for Bayesian Analysis (ISBA) was founded in 1992 to promote the development and application of Bayesian analysis.
bayesian.org
September 5, 2025 at 1:57 PM
The 𝐈𝐧𝐭𝐞𝐫𝐧𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐒𝐨𝐜𝐢𝐞𝐭𝐲 𝐟𝐨𝐫 𝐁𝐚𝐲𝐞𝐬𝐢𝐚𝐧 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬 (𝐈𝐒𝐁𝐀) was founded in 1992 to promote the development and application of Bayesian analysis.
𝘐𝘚𝘉𝘈 𝘱𝘳𝘰𝘷𝘪𝘥𝘦𝘴 𝘢𝘯 𝘪𝘯𝘵𝘦𝘳𝘯𝘢𝘵𝘪𝘰𝘯𝘢𝘭 𝘤𝘰𝘮𝘮𝘶𝘯𝘪𝘵𝘺 𝘧𝘰𝘳 𝘵𝘩𝘰𝘴𝘦 𝘪𝘯𝘵𝘦𝘳𝘦𝘴𝘵𝘦𝘥 𝘪𝘯 𝘉𝘢𝘺𝘦𝘴𝘪𝘢𝘯 𝘢𝘯𝘢𝘭𝘺𝘴𝘪𝘴 𝘢𝘯𝘥 𝘪𝘵𝘴 𝘢𝘱𝘱𝘭𝘪𝘤𝘢𝘵𝘪𝘰𝘯𝘴.
Find us across the web:
linktr.ee/ISBAbayesian
𝘐𝘚𝘉𝘈 𝘱𝘳𝘰𝘷𝘪𝘥𝘦𝘴 𝘢𝘯 𝘪𝘯𝘵𝘦𝘳𝘯𝘢𝘵𝘪𝘰𝘯𝘢𝘭 𝘤𝘰𝘮𝘮𝘶𝘯𝘪𝘵𝘺 𝘧𝘰𝘳 𝘵𝘩𝘰𝘴𝘦 𝘪𝘯𝘵𝘦𝘳𝘦𝘴𝘵𝘦𝘥 𝘪𝘯 𝘉𝘢𝘺𝘦𝘴𝘪𝘢𝘯 𝘢𝘯𝘢𝘭𝘺𝘴𝘪𝘴 𝘢𝘯𝘥 𝘪𝘵𝘴 𝘢𝘱𝘱𝘭𝘪𝘤𝘢𝘵𝘪𝘰𝘯𝘴.
Find us across the web:
linktr.ee/ISBAbayesian
New paper, with P. Basak, A.R. Linero, and C. Maringe, accepted in JASA A&CS
"Understanding Inequalities in Cancer Survival Using Bayesian Machine Learning"
doi.org/10.1080/0162...
#inequalities #cancer #survival #Bayesian #MachineLearning @icon-lshtm.bsky.social @statisticsucl.bsky.social
"Understanding Inequalities in Cancer Survival Using Bayesian Machine Learning"
doi.org/10.1080/0162...
#inequalities #cancer #survival #Bayesian #MachineLearning @icon-lshtm.bsky.social @statisticsucl.bsky.social
August 21, 2025 at 6:20 AM
New paper, with P. Basak, A.R. Linero, and C. Maringe, accepted in JASA A&CS
"Understanding Inequalities in Cancer Survival Using Bayesian Machine Learning"
doi.org/10.1080/0162...
#inequalities #cancer #survival #Bayesian #MachineLearning @icon-lshtm.bsky.social @statisticsucl.bsky.social
"Understanding Inequalities in Cancer Survival Using Bayesian Machine Learning"
doi.org/10.1080/0162...
#inequalities #cancer #survival #Bayesian #MachineLearning @icon-lshtm.bsky.social @statisticsucl.bsky.social
The effect of the shape (skewness) parameter in skew-symmetric models: Part II
rpubs.com/FJRubio/Disc...
Based on a recently proposed discrepancy measures, it shows that in certain models, such as the skew-normal, the influence of the shape parameter is negligible across a broad interval around 0.
rpubs.com/FJRubio/Disc...
Based on a recently proposed discrepancy measures, it shows that in certain models, such as the skew-normal, the influence of the shape parameter is negligible across a broad interval around 0.
RPubs - The effect of the shape (skewness) parameter in skew-symmetric models, Part II
rpubs.com
August 20, 2025 at 8:46 AM
The effect of the shape (skewness) parameter in skew-symmetric models: Part II
rpubs.com/FJRubio/Disc...
Based on a recently proposed discrepancy measures, it shows that in certain models, such as the skew-normal, the influence of the shape parameter is negligible across a broad interval around 0.
rpubs.com/FJRubio/Disc...
Based on a recently proposed discrepancy measures, it shows that in certain models, such as the skew-normal, the influence of the shape parameter is negligible across a broad interval around 0.
Reposted by F. Javier Rubio
Reminder that all three books I've co-authored are freely available online for non-commercial use (and the fourth will be, too)
All three books I've co-authored are freely available online for non-commercial use:
- #Bayesian Data Analysis, 3rd ed (aka BDA3) at stat.columbia.edu/~gelman/book/
- #Regression and Other Stories at avehtari.github.io/ROS-Examples/
- Active Statistics at avehtari.github.io/ActiveStatis...
- #Bayesian Data Analysis, 3rd ed (aka BDA3) at stat.columbia.edu/~gelman/book/
- #Regression and Other Stories at avehtari.github.io/ROS-Examples/
- Active Statistics at avehtari.github.io/ActiveStatis...
August 11, 2025 at 5:44 PM
Reminder that all three books I've co-authored are freely available online for non-commercial use (and the fourth will be, too)
Reposted by F. Javier Rubio
I've got 1 event in one group in which we know the risk of the outcome is very low.
This is creating enormous confidence intervals. Can I use firth penalization? Should I get more data? All ideas welcome
stats.stackexchange.com/questions/66...
This is creating enormous confidence intervals. Can I use firth penalization? Should I get more data? All ideas welcome
stats.stackexchange.com/questions/66...
Approaches for modelling survival time in groups with very low risk
I'm currently working on a study with a group of hematologists. Patients with PV (Polycythemia vera) have very low risk of future thromboembolism after diagnosis due to disease management. Patients
stats.stackexchange.com
August 7, 2025 at 2:06 AM
I've got 1 event in one group in which we know the risk of the outcome is very low.
This is creating enormous confidence intervals. Can I use firth penalization? Should I get more data? All ideas welcome
stats.stackexchange.com/questions/66...
This is creating enormous confidence intervals. Can I use firth penalization? Should I get more data? All ideas welcome
stats.stackexchange.com/questions/66...
Reposted by F. Javier Rubio
July 21, 2025 at 11:54 PM
New preprint with Fabrizio Leisen and our PhD student Zhanli Wu:
"Conformalized Regression for Bounded Outcomes"
arxiv.org/abs/2507.14023
#rstats #conformal #prediction
R code and data are also available at:
github.com/ZWU-001/CPBo...
"Conformalized Regression for Bounded Outcomes"
arxiv.org/abs/2507.14023
#rstats #conformal #prediction
R code and data are also available at:
github.com/ZWU-001/CPBo...
Conformalized Regression for Continuous Bounded Outcomes
Regression problems with bounded continuous outcomes frequently arise in real-world statistical and machine learning applications, such as the analysis of rates and proportions. A central challenge in...
arxiv.org
July 21, 2025 at 8:19 AM
New preprint with Fabrizio Leisen and our PhD student Zhanli Wu:
"Conformalized Regression for Bounded Outcomes"
arxiv.org/abs/2507.14023
#rstats #conformal #prediction
R code and data are also available at:
github.com/ZWU-001/CPBo...
"Conformalized Regression for Bounded Outcomes"
arxiv.org/abs/2507.14023
#rstats #conformal #prediction
R code and data are also available at:
github.com/ZWU-001/CPBo...
Reposted by F. Javier Rubio
🚨3 Departmental PhD Studentships have now become available. The deadline for applications will be 31 of July. Available for overseas and home students.
www.ucl.ac.uk/statistics/p...
www.ucl.ac.uk/statistics/p...
Research Studentships
www.ucl.ac.uk
July 11, 2025 at 9:13 AM
🚨3 Departmental PhD Studentships have now become available. The deadline for applications will be 31 of July. Available for overseas and home students.
www.ucl.ac.uk/statistics/p...
www.ucl.ac.uk/statistics/p...
The latest issue of the ISBA bulletin, containing a call for contributed discussions for two papers:
July 6, 2025 at 12:20 PM
The latest issue of the ISBA bulletin, containing a call for contributed discussions for two papers:
Reposted by F. Javier Rubio
June 12, 2025 at 8:28 PM
Call for discussion papers 2025: Innovative usages of natural experiments and causal inference in statistics and data science👇
rss.org.uk/news-publica...
rss.org.uk/news-publica...
Call for discussion papers 2025: Innovative usages of natural experiments and causal inference in st
rss.org.uk
June 3, 2025 at 11:19 AM
Call for discussion papers 2025: Innovative usages of natural experiments and causal inference in statistics and data science👇
rss.org.uk/news-publica...
rss.org.uk/news-publica...
Interesting to see cancer epidemiology papers in the top 10:
April 15, 2025 at 11:53 AM
Interesting to see cancer epidemiology papers in the top 10: