Devang Thakkar
@devangthakkar.com
I walk and I make stuff - wood | code | design
PhD Candidate, Computational Biology and Bioinformatics at Duke
Prev: BTech IIT Bombay
PhD Candidate, Computational Biology and Bioinformatics at Duke
Prev: BTech IIT Bombay
Short walk today (not by choice, there wasn't any more to walk in the north - red is today's walk) 4.8 miles, and the north is done! Still a walk in the NE corner, and a couple of walks in the NW, but we're getting there! #WalkDurham
October 18, 2023 at 3:12 AM
Short walk today (not by choice, there wasn't any more to walk in the north - red is today's walk) 4.8 miles, and the north is done! Still a walk in the NE corner, and a couple of walks in the NW, but we're getting there! #WalkDurham
Reposted by Devang Thakkar
All Heng Li formats are alike: efficient, well documented, necessary.
All non-Heng-Li formats are broken in their own special ways.
All non-Heng-Li formats are broken in their own special ways.
October 15, 2023 at 1:25 AM
All Heng Li formats are alike: efficient, well documented, necessary.
All non-Heng-Li formats are broken in their own special ways.
All non-Heng-Li formats are broken in their own special ways.
Still recovering from some stuffy nose but had to get out of the house. 6.8 miles in two hours at the northern boundary, followed by a hearty Torero's meal. Always a delight to see all the Halloween decorations up! #WalkDurham
www.devangthakkar.com/walkdurham
www.devangthakkar.com/walkdurham
October 16, 2023 at 12:41 AM
Still recovering from some stuffy nose but had to get out of the house. 6.8 miles in two hours at the northern boundary, followed by a hearty Torero's meal. Always a delight to see all the Halloween decorations up! #WalkDurham
www.devangthakkar.com/walkdurham
www.devangthakkar.com/walkdurham
Reposted by Devang Thakkar
We have a cool new tool (in rust!) for bulk sequencing-based quantification brewing (github.com/COMBINE-lab/...). It should work well for RNA-seq quantification, metagenomic abundance estimation & related problems. Will put up quickstart guide soon for those interested in testing. Feedback welcome!
GitHub - COMBINE-lab/piscem-infer
Contribute to COMBINE-lab/piscem-infer development by creating an account on GitHub.
github.com
September 30, 2023 at 3:45 PM
We have a cool new tool (in rust!) for bulk sequencing-based quantification brewing (github.com/COMBINE-lab/...). It should work well for RNA-seq quantification, metagenomic abundance estimation & related problems. Will put up quickstart guide soon for those interested in testing. Feedback welcome!
Needed to take my mind off of my committee meeting tomorrow so I took a short walk this evening - touched my northern boundary for the first time! I-85 really is loud, despite all the brick walls. #WalkDurham
October 2, 2023 at 12:56 AM
Needed to take my mind off of my committee meeting tomorrow so I took a short walk this evening - touched my northern boundary for the first time! I-85 really is loud, despite all the brick walls. #WalkDurham
Reposted by Devang Thakkar
Sneak peek of sandbox.bio v2 👀
Some of the new tools we will support: Freebayes, SeqKit, Lumpy, Kraken2, Jellyfish, Mummer, Kallisto, ViralMSA, Sniffles.
What other tools and tutorials would you like to see?
Some of the new tools we will support: Freebayes, SeqKit, Lumpy, Kraken2, Jellyfish, Mummer, Kallisto, ViralMSA, Sniffles.
What other tools and tutorials would you like to see?
September 15, 2023 at 6:25 PM
Sneak peek of sandbox.bio v2 👀
Some of the new tools we will support: Freebayes, SeqKit, Lumpy, Kraken2, Jellyfish, Mummer, Kallisto, ViralMSA, Sniffles.
What other tools and tutorials would you like to see?
Some of the new tools we will support: Freebayes, SeqKit, Lumpy, Kraken2, Jellyfish, Mummer, Kallisto, ViralMSA, Sniffles.
What other tools and tutorials would you like to see?
A promising long walk cut short by the weather - 7 miles, 2.5h nevertheless. Walked past CenterFest downtown, touched the easternmost boundary of Roxboro St, got caught in the rain (not a fan of that, but I do like piña coladas). Good start to the day! #WalkDurham
September 17, 2023 at 7:08 PM
A promising long walk cut short by the weather - 7 miles, 2.5h nevertheless. Walked past CenterFest downtown, touched the easternmost boundary of Roxboro St, got caught in the rain (not a fan of that, but I do like piña coladas). Good start to the day! #WalkDurham
Today's walk brought me to a 100K! I started this project exactly a year ago, and while I haven't kept up the pace I expected, I am glad (and a bit amazed) that I kept it up. A lot was covered - and a good bit left, but today we savor this. (red - this year, black - bounds) #WalkDurham
September 13, 2023 at 1:49 AM
Today's walk brought me to a 100K! I started this project exactly a year ago, and while I haven't kept up the pace I expected, I am glad (and a bit amazed) that I kept it up. A lot was covered - and a good bit left, but today we savor this. (red - this year, black - bounds) #WalkDurham
Porting my #WalkDurham activity from the other place (twitter.com/devangvang/s...)
Back after a bigger summer hiatus, 8.8 miles in Trinity Park. Pretty old houses, green streets, the petrichor reminded me of Mumbai, and of a bygone era. #WalkDurham
Back after a bigger summer hiatus, 8.8 miles in Trinity Park. Pretty old houses, green streets, the petrichor reminded me of Mumbai, and of a bygone era. #WalkDurham
September 13, 2023 at 1:47 AM
Porting my #WalkDurham activity from the other place (twitter.com/devangvang/s...)
Back after a bigger summer hiatus, 8.8 miles in Trinity Park. Pretty old houses, green streets, the petrichor reminded me of Mumbai, and of a bygone era. #WalkDurham
Back after a bigger summer hiatus, 8.8 miles in Trinity Park. Pretty old houses, green streets, the petrichor reminded me of Mumbai, and of a bygone era. #WalkDurham