Brad Weiler, Ph.D.
@bradweilerdives.bsky.social
Postdoc @miamirosenstiel.bsky.social and NOAA AOML Coral Program 🪸 | PhD from @delCampoLab | Coral Holobiont Function and Composition through Health and Disease 🔬🦠🧬
Pinned
🚨New Preprint Alert🚨 P. strigosa, a reef-building coral shows tightly regulated transcriptional control over natural diel cycles. #CoralReefs #Symbiosky #bioinformatics #marinemicrobes #protistsonsky www.biorxiv.org/content/10.1...
Reposted by Brad Weiler, Ph.D.
1. Postdoc in plant-fungal interactions: jobsite.sheffield.ac.uk/job/Research...
2. Postdoc in molecular plant-microbe interactions: jobsite.sheffield.ac.uk/job/Research...
3. Research technician: jobsite.sheffield.ac.uk/job/Technici...
(Pls share!)
2. Postdoc in molecular plant-microbe interactions: jobsite.sheffield.ac.uk/job/Research...
3. Research technician: jobsite.sheffield.ac.uk/job/Technici...
(Pls share!)
Research Associate: Plant-fungal interactions
Research Associate: Plant-fungal interactions
jobsite.sheffield.ac.uk
November 8, 2025 at 1:00 PM
1. Postdoc in plant-fungal interactions: jobsite.sheffield.ac.uk/job/Research...
2. Postdoc in molecular plant-microbe interactions: jobsite.sheffield.ac.uk/job/Research...
3. Research technician: jobsite.sheffield.ac.uk/job/Technici...
(Pls share!)
2. Postdoc in molecular plant-microbe interactions: jobsite.sheffield.ac.uk/job/Research...
3. Research technician: jobsite.sheffield.ac.uk/job/Technici...
(Pls share!)
Reposted by Brad Weiler, Ph.D.
Oligonucleotide design meets big data:
We present oligoN-design, a simple, reproducible and versatile open-source tool to design specific primers and probes directly from large environmental DNA datasets.
🔗 DOI: doi.org/10.1101/2025...
👉 github.com/MiguelMSandi...
We present oligoN-design, a simple, reproducible and versatile open-source tool to design specific primers and probes directly from large environmental DNA datasets.
🔗 DOI: doi.org/10.1101/2025...
👉 github.com/MiguelMSandi...
November 7, 2025 at 12:54 PM
Oligonucleotide design meets big data:
We present oligoN-design, a simple, reproducible and versatile open-source tool to design specific primers and probes directly from large environmental DNA datasets.
🔗 DOI: doi.org/10.1101/2025...
👉 github.com/MiguelMSandi...
We present oligoN-design, a simple, reproducible and versatile open-source tool to design specific primers and probes directly from large environmental DNA datasets.
🔗 DOI: doi.org/10.1101/2025...
👉 github.com/MiguelMSandi...
Reposted by Brad Weiler, Ph.D.
9 days till registration closes!
bsky.app/profile/jlst...
bsky.app/profile/jlst...
The full list of workshop instructors is available here.
Registration closes November 15 🥳🥳
bsky.app/profile/jlst...
Registration closes November 15 🥳🥳
bsky.app/profile/jlst...
November 6, 2025 at 9:32 PM
9 days till registration closes!
bsky.app/profile/jlst...
bsky.app/profile/jlst...
Reposted by Brad Weiler, Ph.D.
Do you teach #rstats? Do your students complain about how lame and old-fashioned dplyr is? Don't worry: I have the solution for you: github.com/hadley/genzp....
genzplyr is dplyr, but bussin fr fr no cap.
genzplyr is dplyr, but bussin fr fr no cap.
GitHub - hadley/genzplyr: dplyr but make it bussin fr fr no cap
dplyr but make it bussin fr fr no cap. Contribute to hadley/genzplyr development by creating an account on GitHub.
github.com
November 6, 2025 at 11:25 PM
Do you teach #rstats? Do your students complain about how lame and old-fashioned dplyr is? Don't worry: I have the solution for you: github.com/hadley/genzp....
genzplyr is dplyr, but bussin fr fr no cap.
genzplyr is dplyr, but bussin fr fr no cap.
Reposted by Brad Weiler, Ph.D.
So happy to share this! Bacteriocins were first discovered over 100 years ago, but what do they actually do? We look at >1000 bacteriocin plasmids and find links to virulence and antimicrobial resistance, and frequent bacteriocin sharing in Enterobacteriaceae.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Bacterial warfare is associated with virulence and antimicrobial resistance - Nature Communications
Bacteria employ a range of competition systems that deliver toxins to inhibit competing strains. This study shows that these systems are particularly important for the ecology of virulent and antibiot...
www.nature.com
November 5, 2025 at 7:32 AM
So happy to share this! Bacteriocins were first discovered over 100 years ago, but what do they actually do? We look at >1000 bacteriocin plasmids and find links to virulence and antimicrobial resistance, and frequent bacteriocin sharing in Enterobacteriaceae.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Brad Weiler, Ph.D.
Our lab has published a couple of major papers in the past few months, which I would like to highlight in this thread! 🧵
October 23, 2025 at 6:10 AM
Our lab has published a couple of major papers in the past few months, which I would like to highlight in this thread! 🧵
Reposted by Brad Weiler, Ph.D.
Quest for Orthologs 8 meeting report/review: where AI, protein structure, isoforms & domains meet orthology. We review recent developments in the field, with applications from environmental genomics to agriculture. Many authors, led by @irenejulca.bsky.social. Open access: doi.org/10.1007/s002...
Quest for Orthologs in the era of Data Deluge and AI: Challenges and Innovations in Orthology Prediction and Data Integration - Journal of Molecular Evolution
The rapid advancement of DNA sequencing technologies and computational algorithms has led to an unprecedented surge in genomic data, driven by several large-scale sequencing projects worldwide. Orthol...
doi.org
October 23, 2025 at 6:22 AM
Quest for Orthologs 8 meeting report/review: where AI, protein structure, isoforms & domains meet orthology. We review recent developments in the field, with applications from environmental genomics to agriculture. Many authors, led by @irenejulca.bsky.social. Open access: doi.org/10.1007/s002...
Reposted by Brad Weiler, Ph.D.
Hi folks! Is anyone recruiting masters students that pay a livable stipend? I have an excellent senior who is an incredible researcher and seeking a position. She is top notch and really interested in mechanistic questions- currently working on Aiptasia, Astrangia and Nematostella.
October 21, 2025 at 1:23 PM
Hi folks! Is anyone recruiting masters students that pay a livable stipend? I have an excellent senior who is an incredible researcher and seeking a position. She is top notch and really interested in mechanistic questions- currently working on Aiptasia, Astrangia and Nematostella.
Reposted by Brad Weiler, Ph.D.
We are happy to share our latest work in @nature.com . We study the genomic and cellular basis of facultative symbiosis in Oculina patagonica - a Mediterranean coral remarkable for its ability to survive long periods without algal symbionts. Led by Shani Levy and @xgrau.bsky.social
rdcu.be/eLbaZ
rdcu.be/eLbaZ
October 15, 2025 at 7:58 PM
We are happy to share our latest work in @nature.com . We study the genomic and cellular basis of facultative symbiosis in Oculina patagonica - a Mediterranean coral remarkable for its ability to survive long periods without algal symbionts. Led by Shani Levy and @xgrau.bsky.social
rdcu.be/eLbaZ
rdcu.be/eLbaZ
Reposted by Brad Weiler, Ph.D.
Reminder, we’re hiring 2 PhD students for next year!! I’m extending the deadline to Nov 1, but please get your app in soon if you’re interested in joining us! More info is on our webpage. 🦠🦑
Please share with ECRs you know as well and check out our other open positio. (Postdoc!)
Please share with ECRs you know as well and check out our other open positio. (Postdoc!)
🚨🚨We’re hiring graduate students!🚨🚨
We are hiring 1-2 PhD students to start sometime in 2026 (Fall start dates preferred). Opportunities to work on a diversity of eco-evo-immuno and symbiosis projects!
Deadline Oct 15! Please share broadly!
Info here: tinyurl.com/y2abjsem
We are hiring 1-2 PhD students to start sometime in 2026 (Fall start dates preferred). Opportunities to work on a diversity of eco-evo-immuno and symbiosis projects!
Deadline Oct 15! Please share broadly!
Info here: tinyurl.com/y2abjsem
opportunities – Symbiommunity Lab
tinyurl.com
October 14, 2025 at 10:46 PM
Reminder, we’re hiring 2 PhD students for next year!! I’m extending the deadline to Nov 1, but please get your app in soon if you’re interested in joining us! More info is on our webpage. 🦠🦑
Please share with ECRs you know as well and check out our other open positio. (Postdoc!)
Please share with ECRs you know as well and check out our other open positio. (Postdoc!)
Reposted by Brad Weiler, Ph.D.
Planning a field-based DNA detection protocol for a parasite. Anyone have any recommendations for one or two step DNA extraction protocols that might be compatible in conditions with limited equipment? #science
October 12, 2025 at 11:10 PM
Planning a field-based DNA detection protocol for a parasite. Anyone have any recommendations for one or two step DNA extraction protocols that might be compatible in conditions with limited equipment? #science
Reposted by Brad Weiler, Ph.D.
🪸🧪 We’re hiring! Join our ERC-funded group at the @hifmb.de in Oldenburg, Germany to explore the cellular origins of photosymbiosis:
𝟏 𝐏𝐨𝐬𝐭𝐝𝐨𝐜 + 𝟐 𝐏𝐡𝐃𝐬 𝐩𝐨𝐬𝐢𝐭𝐢𝐨𝐧𝐬.
Deadlines: Oct 29 & Nov 5. Links below.
Questions: nils.raedecker@hifmb.de
#Photosymbiosis #HIFMB #ERC #AcademicJobs
𝟏 𝐏𝐨𝐬𝐭𝐝𝐨𝐜 + 𝟐 𝐏𝐡𝐃𝐬 𝐩𝐨𝐬𝐢𝐭𝐢𝐨𝐧𝐬.
Deadlines: Oct 29 & Nov 5. Links below.
Questions: nils.raedecker@hifmb.de
#Photosymbiosis #HIFMB #ERC #AcademicJobs
October 6, 2025 at 12:27 PM
🪸🧪 We’re hiring! Join our ERC-funded group at the @hifmb.de in Oldenburg, Germany to explore the cellular origins of photosymbiosis:
𝟏 𝐏𝐨𝐬𝐭𝐝𝐨𝐜 + 𝟐 𝐏𝐡𝐃𝐬 𝐩𝐨𝐬𝐢𝐭𝐢𝐨𝐧𝐬.
Deadlines: Oct 29 & Nov 5. Links below.
Questions: nils.raedecker@hifmb.de
#Photosymbiosis #HIFMB #ERC #AcademicJobs
𝟏 𝐏𝐨𝐬𝐭𝐝𝐨𝐜 + 𝟐 𝐏𝐡𝐃𝐬 𝐩𝐨𝐬𝐢𝐭𝐢𝐨𝐧𝐬.
Deadlines: Oct 29 & Nov 5. Links below.
Questions: nils.raedecker@hifmb.de
#Photosymbiosis #HIFMB #ERC #AcademicJobs
Reposted by Brad Weiler, Ph.D.
We examined Oxford Nanopore 16S amplicon sequencing as a tool for recovering marine microbial communities and we are pleased with the results! Check out our preprint 🌎🧪🧬🌊🖥️🦠https://www.biorxiv.org/content/10.1101/2025.09.20.676612v2.abstract
Evaluation of full-length 16S rRNA amplicon sequencing using Oxford Nanopore Technologies for diversity surveys of understudied microbiomes
1. The use of long-read sequencing using portable Oxford Nanopore Technologies (ONT) is becoming increasingly popular in the study of host-associated microbiomes. However, its application has not yet...
www.biorxiv.org
October 7, 2025 at 1:15 AM
We examined Oxford Nanopore 16S amplicon sequencing as a tool for recovering marine microbial communities and we are pleased with the results! Check out our preprint 🌎🧪🧬🌊🖥️🦠https://www.biorxiv.org/content/10.1101/2025.09.20.676612v2.abstract
Reposted by Brad Weiler, Ph.D.
My group at NOAA/Miami is hiring a postdoc to lead a marine eDNA biodiversity effort (Bio-GO-SHIP). You'll develop and deploy high-throughput metabarcoding assays for ocean DNA. Help make foundational contributions to global marine biodiversity monitoring! t.co/p53s7E0YiL
https://explore.msujobs.msstate.edu/cw/en-us/job/509519
t.co
September 8, 2025 at 3:54 PM
My group at NOAA/Miami is hiring a postdoc to lead a marine eDNA biodiversity effort (Bio-GO-SHIP). You'll develop and deploy high-throughput metabarcoding assays for ocean DNA. Help make foundational contributions to global marine biodiversity monitoring! t.co/p53s7E0YiL
Reposted by Brad Weiler, Ph.D.
We're hiring for several positions (a post-bac researcher in #transcriptomics, a #phage #postdoc, a senior researcher (broad topics) and a graduate student to work on #ciliates) - find info here: www.marine.usf.edu/genomics/app...
Apply - Genomics
www.marine.usf.edu
October 2, 2025 at 5:29 PM
We're hiring for several positions (a post-bac researcher in #transcriptomics, a #phage #postdoc, a senior researcher (broad topics) and a graduate student to work on #ciliates) - find info here: www.marine.usf.edu/genomics/app...
Reposted by Brad Weiler, Ph.D.
🪸 New paper alert 🧬
We developed a highly accurate diagnostic tool that classifies between two #coral diseases: white plague and stony coral tissue loss disease. This model accurately classified in situ collected diseased samples, supporting its use as a diagnostic tool.
rdcu.be/eCNic
We developed a highly accurate diagnostic tool that classifies between two #coral diseases: white plague and stony coral tissue loss disease. This model accurately classified in situ collected diseased samples, supporting its use as a diagnostic tool.
rdcu.be/eCNic
Leveraging machine learning to classify and characterize gene expression patterns in two coral diseases
rdcu.be
August 29, 2025 at 10:19 PM
🪸 New paper alert 🧬
We developed a highly accurate diagnostic tool that classifies between two #coral diseases: white plague and stony coral tissue loss disease. This model accurately classified in situ collected diseased samples, supporting its use as a diagnostic tool.
rdcu.be/eCNic
We developed a highly accurate diagnostic tool that classifies between two #coral diseases: white plague and stony coral tissue loss disease. This model accurately classified in situ collected diseased samples, supporting its use as a diagnostic tool.
rdcu.be/eCNic
Reposted by Brad Weiler, Ph.D.
Check out our new paper on adopting a trait-based framework for protist diversity! We make the case for a unified protist trait database, how to build it, and how it could transform research on protist ecology and evolution.
#protistsonsky
#protistsonsky
Hello there 🦋
Happy to share our piece "Towards a trait-based framework for protist ecology and evolution" in @cp-trendsmicrobiol.bsky.social
Let's build a unified trait 📏 database to unlock transformative insights into protist 🔬 ecology 🌍 and evolution ⏳
▶️ doi.org/10.1016/j.ti...
#protistsonsky
Happy to share our piece "Towards a trait-based framework for protist ecology and evolution" in @cp-trendsmicrobiol.bsky.social
Let's build a unified trait 📏 database to unlock transformative insights into protist 🔬 ecology 🌍 and evolution ⏳
▶️ doi.org/10.1016/j.ti...
#protistsonsky
September 3, 2025 at 8:47 AM
Check out our new paper on adopting a trait-based framework for protist diversity! We make the case for a unified protist trait database, how to build it, and how it could transform research on protist ecology and evolution.
#protistsonsky
#protistsonsky
Reposted by Brad Weiler, Ph.D.
Hello there 🦋
Happy to share our piece "Towards a trait-based framework for protist ecology and evolution" in @cp-trendsmicrobiol.bsky.social
Let's build a unified trait 📏 database to unlock transformative insights into protist 🔬 ecology 🌍 and evolution ⏳
▶️ doi.org/10.1016/j.ti...
#protistsonsky
Happy to share our piece "Towards a trait-based framework for protist ecology and evolution" in @cp-trendsmicrobiol.bsky.social
Let's build a unified trait 📏 database to unlock transformative insights into protist 🔬 ecology 🌍 and evolution ⏳
▶️ doi.org/10.1016/j.ti...
#protistsonsky
September 3, 2025 at 8:30 AM
Hello there 🦋
Happy to share our piece "Towards a trait-based framework for protist ecology and evolution" in @cp-trendsmicrobiol.bsky.social
Let's build a unified trait 📏 database to unlock transformative insights into protist 🔬 ecology 🌍 and evolution ⏳
▶️ doi.org/10.1016/j.ti...
#protistsonsky
Happy to share our piece "Towards a trait-based framework for protist ecology and evolution" in @cp-trendsmicrobiol.bsky.social
Let's build a unified trait 📏 database to unlock transformative insights into protist 🔬 ecology 🌍 and evolution ⏳
▶️ doi.org/10.1016/j.ti...
#protistsonsky
Reposted by Brad Weiler, Ph.D.
#JoinOurTeam
📣 L'#IBE_Barcelona ofereix dues posicions a la Unitat de Gestió de Projectes i Ajuts de Recerca!📣
🔹Tècnic/a d’internacionalització
🔹Gestor post-award de projectes ERC
📆 Aplica abans del 21 de setembre 👉https://www.ibe.upf-csic.es/work-with-us/job-offers
📣 L'#IBE_Barcelona ofereix dues posicions a la Unitat de Gestió de Projectes i Ajuts de Recerca!📣
🔹Tècnic/a d’internacionalització
🔹Gestor post-award de projectes ERC
📆 Aplica abans del 21 de setembre 👉https://www.ibe.upf-csic.es/work-with-us/job-offers
September 3, 2025 at 10:20 AM
#JoinOurTeam
📣 L'#IBE_Barcelona ofereix dues posicions a la Unitat de Gestió de Projectes i Ajuts de Recerca!📣
🔹Tècnic/a d’internacionalització
🔹Gestor post-award de projectes ERC
📆 Aplica abans del 21 de setembre 👉https://www.ibe.upf-csic.es/work-with-us/job-offers
📣 L'#IBE_Barcelona ofereix dues posicions a la Unitat de Gestió de Projectes i Ajuts de Recerca!📣
🔹Tècnic/a d’internacionalització
🔹Gestor post-award de projectes ERC
📆 Aplica abans del 21 de setembre 👉https://www.ibe.upf-csic.es/work-with-us/job-offers
Reposted by Brad Weiler, Ph.D.
The Mydlarz Lab has a second coral machine learning paper out this month! @emily-vanburen.bsky.social developed a diagnostic tool that classifies two coral diseases: white plague and #SCTLD. 463 genes, some involved in inflammation and protein trafficking, characterized the diseases.
rdcu.be/eCNic
rdcu.be/eCNic
Leveraging machine learning to classify and characterize gene expression patterns in two coral diseases
rdcu.be
September 1, 2025 at 9:43 PM
The Mydlarz Lab has a second coral machine learning paper out this month! @emily-vanburen.bsky.social developed a diagnostic tool that classifies two coral diseases: white plague and #SCTLD. 463 genes, some involved in inflammation and protein trafficking, characterized the diseases.
rdcu.be/eCNic
rdcu.be/eCNic
Reposted by Brad Weiler, Ph.D.
🚨Job alert 🚨
The University of Miami’s Rosenstiel School of Marine, Atmospheric, and Earth Science (Rosenstiel) and Cooperative Institute for Marine and Atmospheric Studies (CIMAS) are looking for an omics lab manager 🧬
careers.miami.edu/us/en/job/R1...
The University of Miami’s Rosenstiel School of Marine, Atmospheric, and Earth Science (Rosenstiel) and Cooperative Institute for Marine and Atmospheric Studies (CIMAS) are looking for an omics lab manager 🧬
careers.miami.edu/us/en/job/R1...
Research Associate II in Miami, Florida, United States of America | Research at University of Miami
Apply for Research Associate II job with University of Miami in Miami, Florida, United States of America. Research at University of Miami
careers.miami.edu
August 29, 2025 at 4:25 PM
🚨Job alert 🚨
The University of Miami’s Rosenstiel School of Marine, Atmospheric, and Earth Science (Rosenstiel) and Cooperative Institute for Marine and Atmospheric Studies (CIMAS) are looking for an omics lab manager 🧬
careers.miami.edu/us/en/job/R1...
The University of Miami’s Rosenstiel School of Marine, Atmospheric, and Earth Science (Rosenstiel) and Cooperative Institute for Marine and Atmospheric Studies (CIMAS) are looking for an omics lab manager 🧬
careers.miami.edu/us/en/job/R1...
Reposted by Brad Weiler, Ph.D.
Looking for a postdoc in coral-associated bacterial genomes/metagenomes/metatranscriptomes? This would be an excellent program to support your original research ideas in a lab with extensive resources, samples, and datasets.
August 29, 2025 at 6:51 PM
Looking for a postdoc in coral-associated bacterial genomes/metagenomes/metatranscriptomes? This would be an excellent program to support your original research ideas in a lab with extensive resources, samples, and datasets.
Share widely please! Opportunity to be involved in highly interdisciplinary research focusing on coral reefs. High-tech lab where robots meet coral 🦾🤖🪸
GREAT OPPORTUNITY: Coral Program Internship (NOAA, AOML) – Miami, Florida
Send CV and cover letter to both ana.maria.palacio@noaa.gov and michael.studivan@noaa.gov
Learn more here: www.thecoralreefresearchhub.com/082120250700...
#coralreefs #intern #internship #coralintern #coral #careers
Send CV and cover letter to both ana.maria.palacio@noaa.gov and michael.studivan@noaa.gov
Learn more here: www.thecoralreefresearchhub.com/082120250700...
#coralreefs #intern #internship #coralintern #coral #careers
August 28, 2025 at 5:55 PM
Share widely please! Opportunity to be involved in highly interdisciplinary research focusing on coral reefs. High-tech lab where robots meet coral 🦾🤖🪸
Reposted by Brad Weiler, Ph.D.
Pseudoalteromonas is a novel symbiont of marine invertebrates that exhibits broad patterns of phylosymbiosis https://www.biorxiv.org/content/10.1101/2025.08.22.671635v1
August 23, 2025 at 3:17 AM
Pseudoalteromonas is a novel symbiont of marine invertebrates that exhibits broad patterns of phylosymbiosis https://www.biorxiv.org/content/10.1101/2025.08.22.671635v1
Reposted by Brad Weiler, Ph.D.
Want to help us image and understand those incredible samples Felix just collected at UBC - and many more?
2 more days to apply!
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
#ExM #PlanetaryCellBiology
🧪🧬🔬🌍🌱🦠
2 more days to apply!
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
#ExM #PlanetaryCellBiology
🧪🧬🔬🌍🌱🦠
August 22, 2025 at 7:58 PM
Want to help us image and understand those incredible samples Felix just collected at UBC - and many more?
2 more days to apply!
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
#ExM #PlanetaryCellBiology
🧪🧬🔬🌍🌱🦠
2 more days to apply!
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
#ExM #PlanetaryCellBiology
🧪🧬🔬🌍🌱🦠