Angie Hinrichs
@angieshinrichs.bsky.social
Working on the UCSC Genome Browser since 2002, SARS-Cov-2 phylogenetics since 2020. Opinions my own not employer's. she/her
Reposted by Angie Hinrichs
Like… people want affordable groceries, housing, and healthcare, *And* they want their friends and loved ones the be alive and safe and free from persecution.
These are not mutually exclusive ideas. They are in fact bound up together.
These are not mutually exclusive ideas. They are in fact bound up together.
Too many news outlets & pols framing Tuesday as affordability *Instead Of* "woke"/"DEI"/whatever the fuck when Mamdani & Sherrill both *explicitly* embraced trans & other LGBTQ+ rights, VA solidly rejected Republicans' virulent anti-trans attack adz, & a PA elected their 1st trans mayor. Be serious.
Pro-Equality Candidates Win, Anti-Trans Campaigns Lose Again, in Election 2025 | GLAAD
History was made, and repeated, in the 2025 election, with significant impacts for LGBTQ Americans and candidates who campaigned to support LGBTQ people. Virginia voters elected the Commonwealth’s fir...
glaad.org
November 9, 2025 at 3:35 PM
Like… people want affordable groceries, housing, and healthcare, *And* they want their friends and loved ones the be alive and safe and free from persecution.
These are not mutually exclusive ideas. They are in fact bound up together.
These are not mutually exclusive ideas. They are in fact bound up together.
Reposted by Angie Hinrichs
To back up their (incorrect) argument that COVID vaccines didn't affect transmission of the early variants, someone just sent me a paper showing that vaccines 'only' prevented infection...
The thing is, it's pretty hard to transmit COVID if you don't get infected in the first place.
The thing is, it's pretty hard to transmit COVID if you don't get infected in the first place.
November 9, 2025 at 7:53 PM
To back up their (incorrect) argument that COVID vaccines didn't affect transmission of the early variants, someone just sent me a paper showing that vaccines 'only' prevented infection...
The thing is, it's pretty hard to transmit COVID if you don't get infected in the first place.
The thing is, it's pretty hard to transmit COVID if you don't get infected in the first place.
Reposted by Angie Hinrichs
Open position at the Swiss Institute of Bioinformatics:
We are looking for a Director of the Center of Pathogen Bioinformatics
apply.refline.ch/499599/0346/...
I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and
We are looking for a Director of the Center of Pathogen Bioinformatics
apply.refline.ch/499599/0346/...
I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and
Director, Center for Pathogen Bioinformatics
The Centre for Pathogen Bioinformatics (CPB) is a unit of SIB which offers expertise and services in pathogen bioinformatics, computational molecular epidemiology and related multi-site project manage...
apply.refline.ch
October 25, 2025 at 1:03 PM
Open position at the Swiss Institute of Bioinformatics:
We are looking for a Director of the Center of Pathogen Bioinformatics
apply.refline.ch/499599/0346/...
I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and
We are looking for a Director of the Center of Pathogen Bioinformatics
apply.refline.ch/499599/0346/...
I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and
Reposted by Angie Hinrichs
I want to spell this out in case the implications aren't clear:
This means all public tools/webapps of GISAID data (all the ones you've been used to seeing thru the pandemic, as far as we can tell) are prohibited.
The file allowed this. Cut that - cut off all tools the public & others were using.
This means all public tools/webapps of GISAID data (all the ones you've been used to seeing thru the pandemic, as far as we can tell) are prohibited.
The file allowed this. Cut that - cut off all tools the public & others were using.
On Oct 1, 2025, GISAID informed us that they had ended updates to the flat file of SARS-CoV-2 genomic sequences and associated metadata that we had used to update Nextstrain analyses since Feb 2020. GISAID's stated rationale was that their "resources are limited". 1/5
November 7, 2025 at 2:41 PM
I want to spell this out in case the implications aren't clear:
This means all public tools/webapps of GISAID data (all the ones you've been used to seeing thru the pandemic, as far as we can tell) are prohibited.
The file allowed this. Cut that - cut off all tools the public & others were using.
This means all public tools/webapps of GISAID data (all the ones you've been used to seeing thru the pandemic, as far as we can tell) are prohibited.
The file allowed this. Cut that - cut off all tools the public & others were using.
Nextstrain's daily-updated tree of SARS-CoV-2 genomes was my gateway into the world of viral phylogenetics in early 2020, and Nextstrain's beautiful interactive tree display is crucial to making usher.bio results usable. GISAID cutting off data harms global surveillance efforts. 🧵👇
On Oct 1, 2025, GISAID informed us that they had ended updates to the flat file of SARS-CoV-2 genomic sequences and associated metadata that we had used to update Nextstrain analyses since Feb 2020. GISAID's stated rationale was that their "resources are limited". 1/5
November 7, 2025 at 5:03 AM
Nextstrain's daily-updated tree of SARS-CoV-2 genomes was my gateway into the world of viral phylogenetics in early 2020, and Nextstrain's beautiful interactive tree display is crucial to making usher.bio results usable. GISAID cutting off data harms global surveillance efforts. 🧵👇
Reposted by Angie Hinrichs
A List of Things Said to Have Been Ruined by Women
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November 6, 2025 at 8:43 PM
A List of Things Said to Have Been Ruined by Women
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🧵
Reposted by Angie Hinrichs
Colorado shows that feeding children is still a popular notion. All school meals should be free.
BREAKING: Colorado voters approved a ballot measure that would raise state income taxes on higher-earning households to fund free meals for all public school students.
Follow AP for live updates.
Follow AP for live updates.
Live updates: US voters head to the polls in first general election since Trump's return to power
One year after Donald Trump retook the presidency, 2025 Election Day includes closely watched races for New York City mayor, New Jersey governor and California's Proposition 50.
bit.ly
November 5, 2025 at 4:10 AM
Colorado shows that feeding children is still a popular notion. All school meals should be free.
Reposted by Angie Hinrichs
GISAID is now blocking genomic sequencing access to critical resources like Nextstrain, Covspectrum, Outbreak-info, & others.
This makes us less safe, as live tracking of viral evolution remains critical for assessment of emerging threats. This needs to be escalated.
This makes us less safe, as live tracking of viral evolution remains critical for assessment of emerging threats. This needs to be escalated.
Bad. No justification, no communication, no standard procedures for making changes—just arbitrary pronouncements cutting off access to some of the most valuable resources we have.
And now NextStrain as well.
Next up, will GISAID start charging open-source community tools to have access?
That would completely shaft users who contributed to GISAID, where we never agreed to that and assumed GISAID would be good custodians of the data we contributed. They're not.
Next up, will GISAID start charging open-source community tools to have access?
That would completely shaft users who contributed to GISAID, where we never agreed to that and assumed GISAID would be good custodians of the data we contributed. They're not.
October 30, 2025 at 10:53 PM
GISAID is now blocking genomic sequencing access to critical resources like Nextstrain, Covspectrum, Outbreak-info, & others.
This makes us less safe, as live tracking of viral evolution remains critical for assessment of emerging threats. This needs to be escalated.
This makes us less safe, as live tracking of viral evolution remains critical for assessment of emerging threats. This needs to be escalated.
Reposted by Angie Hinrichs
Since Greg Abbott made Houston remove the rainbow crosswalk. Rainbows are being painted on homes and businesses all over the city.
November 2, 2025 at 4:40 AM
Since Greg Abbott made Houston remove the rainbow crosswalk. Rainbows are being painted on homes and businesses all over the city.
Reposted by Angie Hinrichs
The USDA sent an email to grocery stores telling them they are prohibited from offering special discounts to customers affected by the SNAP funding lapse.
I'm aware of at least 2 stores that had offered struggling customers a discount, then withdrew it after receiving this email
I'm aware of at least 2 stores that had offered struggling customers a discount, then withdrew it after receiving this email
November 2, 2025 at 7:01 PM
The USDA sent an email to grocery stores telling them they are prohibited from offering special discounts to customers affected by the SNAP funding lapse.
I'm aware of at least 2 stores that had offered struggling customers a discount, then withdrew it after receiving this email
I'm aware of at least 2 stores that had offered struggling customers a discount, then withdrew it after receiving this email
Reposted by Angie Hinrichs
@andersonfbrito.bsky.social and I are seeking input from the community on hosting/sharing arbovirus sequencing data (DENV, CHIKV, OROV, ZIKV, & YFV) on @pathoplexus.org.
Please consider filling out this VERY SHORT survey about your interest and/or concerns.
docs.google.com/forms/d/e/1F...
Please consider filling out this VERY SHORT survey about your interest and/or concerns.
docs.google.com/forms/d/e/1F...
Community survey on the addition of Dengue, Chikungunya, Oropouche, Zika and Yellow fever virus to Pathoplexus
Pathoplexus is a new platform for sharing pathogen sequence data, launched in August 2024 [1], with the primary aim of making sharing and accessing pathogen genomic data easier, faster, and more effic...
docs.google.com
October 30, 2025 at 8:11 PM
@andersonfbrito.bsky.social and I are seeking input from the community on hosting/sharing arbovirus sequencing data (DENV, CHIKV, OROV, ZIKV, & YFV) on @pathoplexus.org.
Please consider filling out this VERY SHORT survey about your interest and/or concerns.
docs.google.com/forms/d/e/1F...
Please consider filling out this VERY SHORT survey about your interest and/or concerns.
docs.google.com/forms/d/e/1F...
Reposted by Angie Hinrichs
You know the situation is bad when the national media is publishing guides to recognize which armed forces might be in your neighborhood.
Trump is ensuring that all parts of the omniforce will be paid during the shutdown, unlike their civilian peers. donmoynihan.substack.com/p/the-risks-...
Trump is ensuring that all parts of the omniforce will be paid during the shutdown, unlike their civilian peers. donmoynihan.substack.com/p/the-risks-...
October 24, 2025 at 3:37 PM
You know the situation is bad when the national media is publishing guides to recognize which armed forces might be in your neighborhood.
Trump is ensuring that all parts of the omniforce will be paid during the shutdown, unlike their civilian peers. donmoynihan.substack.com/p/the-risks-...
Trump is ensuring that all parts of the omniforce will be paid during the shutdown, unlike their civilian peers. donmoynihan.substack.com/p/the-risks-...
Reposted by Angie Hinrichs
Finally read the paper and it's worth the buzz.
mRNA vaccines saved 20 million lives in a global pandemic and the technology is opening up new avenues for the treatment of deadly cancers. This is really one of the most impactful scientific developments of our time.
www.nature.com/articles/s41...
mRNA vaccines saved 20 million lives in a global pandemic and the technology is opening up new avenues for the treatment of deadly cancers. This is really one of the most impactful scientific developments of our time.
www.nature.com/articles/s41...
SARS-CoV-2 mRNA vaccines sensitize tumours to immune checkpoint blockade - Nature
mRNA vaccines targeting SARS-CoV-2 also sensitize tumours to immune checkpoint inhibitors.
www.nature.com
October 25, 2025 at 1:42 PM
Finally read the paper and it's worth the buzz.
mRNA vaccines saved 20 million lives in a global pandemic and the technology is opening up new avenues for the treatment of deadly cancers. This is really one of the most impactful scientific developments of our time.
www.nature.com/articles/s41...
mRNA vaccines saved 20 million lives in a global pandemic and the technology is opening up new avenues for the treatment of deadly cancers. This is really one of the most impactful scientific developments of our time.
www.nature.com/articles/s41...
Reposted by Angie Hinrichs
"Data shows that expansion of those who participate in academic science produces better science that has a wider impact." From a new research-backed defense of DEI programs published today by Needhi Bhalla @ucsantacruz.bsky.social and peers @ucsdmedschool.bsky.social and @uofmass.bsky.social 👏🏾👏🏼👏
@joann-trejo.bsky.social, @marymunson4.bsky.social and I have a commentary in @natcellbio.nature.com on recent attacks on DEI in biomedical research: "If scientific research, especially biomedical research, is meant to serve everyone, then it requires that everyone has an opportunity to participate"
Scaling back DEI programmes and the loss of scientific talent
Nature Cell Biology - Programmes that support diversity, equity and inclusion (DEI) in science are under attack in the USA. Data indicate that diversity in the scientific workforce increases...
www.nature.com
October 23, 2025 at 10:22 PM
"Data shows that expansion of those who participate in academic science produces better science that has a wider impact." From a new research-backed defense of DEI programs published today by Needhi Bhalla @ucsantacruz.bsky.social and peers @ucsdmedschool.bsky.social and @uofmass.bsky.social 👏🏾👏🏼👏
Reposted by Angie Hinrichs
🗓️ June 5, 1981: five cases of Pneumocystis Pneumonia, one report, a global awakening.
💙 The MMWR gave voice to what became the HIV/AIDS epidemic—and countless public-health moments since.
🕯️ Honoring the science and reporting that save lives.
www.cdc.gov/mmwr/preview...
#MMWR #CDCSavesLives
💙 The MMWR gave voice to what became the HIV/AIDS epidemic—and countless public-health moments since.
🕯️ Honoring the science and reporting that save lives.
www.cdc.gov/mmwr/preview...
#MMWR #CDCSavesLives
October 23, 2025 at 5:56 PM
🗓️ June 5, 1981: five cases of Pneumocystis Pneumonia, one report, a global awakening.
💙 The MMWR gave voice to what became the HIV/AIDS epidemic—and countless public-health moments since.
🕯️ Honoring the science and reporting that save lives.
www.cdc.gov/mmwr/preview...
#MMWR #CDCSavesLives
💙 The MMWR gave voice to what became the HIV/AIDS epidemic—and countless public-health moments since.
🕯️ Honoring the science and reporting that save lives.
www.cdc.gov/mmwr/preview...
#MMWR #CDCSavesLives
Reposted by Angie Hinrichs
From a new @thelancet.com article today entitled "Health care in the USA: money has become the mission" www.thelancet.com/journals/lan...
October 21, 2025 at 10:49 PM
From a new @thelancet.com article today entitled "Health care in the USA: money has become the mission" www.thelancet.com/journals/lan...
Reposted by Angie Hinrichs
October 18, 2025 at 11:07 PM
Reposted by Angie Hinrichs
And now NextStrain as well.
Next up, will GISAID start charging open-source community tools to have access?
That would completely shaft users who contributed to GISAID, where we never agreed to that and assumed GISAID would be good custodians of the data we contributed. They're not.
Next up, will GISAID start charging open-source community tools to have access?
That would completely shaft users who contributed to GISAID, where we never agreed to that and assumed GISAID would be good custodians of the data we contributed. They're not.
October 16, 2025 at 7:48 PM
And now NextStrain as well.
Next up, will GISAID start charging open-source community tools to have access?
That would completely shaft users who contributed to GISAID, where we never agreed to that and assumed GISAID would be good custodians of the data we contributed. They're not.
Next up, will GISAID start charging open-source community tools to have access?
That would completely shaft users who contributed to GISAID, where we never agreed to that and assumed GISAID would be good custodians of the data we contributed. They're not.
Reposted by Angie Hinrichs
Our lab's first paper is out! Led by Jordan Ort, we developed NextClade datasets that enable rapid H5 clade assignment via NextClade. We deployed these during the start of the H5 cattle outbreak, and we finally published the paper in Virus Evolution academic.oup.com/ve/article/1...
Development of avian influenza A(H5) virus datasets for Nextclade enables rapid and accurate clade assignment
Abstract. The 2022 panzootic of highly pathogenic avian influenza (HPAI) A(H5) viruses has led to unprecedented transmission to multiple mammalian species.
academic.oup.com
October 15, 2025 at 3:44 PM
Our lab's first paper is out! Led by Jordan Ort, we developed NextClade datasets that enable rapid H5 clade assignment via NextClade. We deployed these during the start of the H5 cattle outbreak, and we finally published the paper in Virus Evolution academic.oup.com/ve/article/1...
Reposted by Angie Hinrichs
Trump: "We're just at the start. We're going to go into other cities that we're not talking about purposely. We're getting ready to go in."
October 15, 2025 at 7:53 PM
Trump: "We're just at the start. We're going to go into other cities that we're not talking about purposely. We're getting ready to go in."
Reposted by Angie Hinrichs
Awesome public health news:
Maldives becomes the first country to achieve ‘triple elimination’ of
1. mother-to-child transmission of HIV,
2. Syphilis and
3. Hepatitis B
www.who.int/news/item/13...
Maldives becomes the first country to achieve ‘triple elimination’ of
1. mother-to-child transmission of HIV,
2. Syphilis and
3. Hepatitis B
www.who.int/news/item/13...
Maldives becomes the first country to achieve ‘triple elimination’ of mother-to-child transmission of HIV, syphilis and hepatitis B
In a landmark public health achievement, WHO has validated the Maldives for eliminating mother-to-child transmission (EMTCT) of hepatitis B, while maintaining its earlier validation (in 2019) for EMTCT of HIV and syphilis. This makes the Maldives the first country in the world to achieve ‘triple elimination’.
www.who.int
October 14, 2025 at 11:43 AM
Awesome public health news:
Maldives becomes the first country to achieve ‘triple elimination’ of
1. mother-to-child transmission of HIV,
2. Syphilis and
3. Hepatitis B
www.who.int/news/item/13...
Maldives becomes the first country to achieve ‘triple elimination’ of
1. mother-to-child transmission of HIV,
2. Syphilis and
3. Hepatitis B
www.who.int/news/item/13...
Reposted by Angie Hinrichs
📣Protesting is important. It is a visible reminder that we are not alone and that we are not powerless. It sends a message to those weak men in DC: that we will not give up our freedoms without a fight 🇺🇸
See you on Saturday. Bring friends 💪
#NoKings 🚫👑
www.nokings.org
See you on Saturday. Bring friends 💪
#NoKings 🚫👑
www.nokings.org
No Kings
As the president escalates his authoritarian power grab, the NO KINGS non-violent movement continues to rise stronger. We are united once again to remind the world: America has No Kings and the power ...
www.nokings.org
October 14, 2025 at 2:07 PM
📣Protesting is important. It is a visible reminder that we are not alone and that we are not powerless. It sends a message to those weak men in DC: that we will not give up our freedoms without a fight 🇺🇸
See you on Saturday. Bring friends 💪
#NoKings 🚫👑
www.nokings.org
See you on Saturday. Bring friends 💪
#NoKings 🚫👑
www.nokings.org
Reposted by Angie Hinrichs
Thankfully, some of yesterday's CDC firings have been rescinded.
But this should be a major scandal, not business as usual in this shitshow of an administration. It's either spectacular incompetence or an effort to make even politically untouchable positions feel precarious to those in them.
But this should be a major scandal, not business as usual in this shitshow of an administration. It's either spectacular incompetence or an effort to make even politically untouchable positions feel precarious to those in them.
100s of #CDC employees were notified Friday they were being fired — RIF'd. The firings cross multiple parts of the agency, endangering its core mission of keeping Americans safe.
Saturday, some were informed they were RIF'd in error.
Hard to imagine how this happens www.statnews.com/2025/10/11/c...
Saturday, some were informed they were RIF'd in error.
Hard to imagine how this happens www.statnews.com/2025/10/11/c...
CDC battered by government shutdown firings, while some are rescinded
The White House’s mass firing of CDC staff on Friday has decimated offices related to injury prevention, respiratory disease surveillance, and chronic disease, according to four people familiar with t...
www.statnews.com
October 12, 2025 at 4:16 AM
Thankfully, some of yesterday's CDC firings have been rescinded.
But this should be a major scandal, not business as usual in this shitshow of an administration. It's either spectacular incompetence or an effort to make even politically untouchable positions feel precarious to those in them.
But this should be a major scandal, not business as usual in this shitshow of an administration. It's either spectacular incompetence or an effort to make even politically untouchable positions feel precarious to those in them.
Reposted by Angie Hinrichs
1/2 A reminder to anyone who was RIFed.
💯 you do NOT deserve this.
Quick tips if you do get a RIF notice:
❌ Do not send a read receipt
❌ Do not respond right away - the union will probably provide language for response
✅ Forward notice to your personal email
💯 you do NOT deserve this.
Quick tips if you do get a RIF notice:
❌ Do not send a read receipt
❌ Do not respond right away - the union will probably provide language for response
✅ Forward notice to your personal email
October 11, 2025 at 1:35 AM
1/2 A reminder to anyone who was RIFed.
💯 you do NOT deserve this.
Quick tips if you do get a RIF notice:
❌ Do not send a read receipt
❌ Do not respond right away - the union will probably provide language for response
✅ Forward notice to your personal email
💯 you do NOT deserve this.
Quick tips if you do get a RIF notice:
❌ Do not send a read receipt
❌ Do not respond right away - the union will probably provide language for response
✅ Forward notice to your personal email