Andrea Doddi
adoddi.bsky.social
Andrea Doddi
@adoddi.bsky.social
Junior post-doc @ Universidad de Cordoba
Reposted by Andrea Doddi
Differential contributions of an antimicrobial effector from Verticillium dahliae to virulence and tomato microbiota assembly across natural soils https://www.biorxiv.org/content/10.1101/2025.09.30.679524v1
October 2, 2025 at 3:04 PM
Reposted by Andrea Doddi
📣 NEW PREPRINT 📝

We identified evolutionary origins of many fungal effectors!
We show that fungi secrete lots of antimicrobial proteins, and that some of them were repurposed by plant pathogens for host immune suppression.
www.biorxiv.org/content/10.1...

cc @teamthomma.bsky.social
Plant-associated fungi co-opt ancient antimicrobials for host manipulation
Evolutionary histories of effector proteins secreted by fungal pathogens to mediate plant colonization remain largely elusive. While most functionally characterized effectors modulate plant immunity, ...
www.biorxiv.org
August 15, 2025 at 7:47 AM
Reposted by Andrea Doddi
📣 Happy to see the journal publication 📄 of our work on Starships 🚀 in Verticillium fungi: terrific work led by @yukiyosato.bsky.social
rdcu.be/exBSp
Starship giant transposons dominate plastic genomic regions in a fungal plant pathogen and drive virulence evolution
Nature Communications - Giant transposons, known as ‘Starships’, mediate horizontal gene transfer between fungal genomes. Here, Sato et al. show that Starships occupy genome regions...
rdcu.be
July 24, 2025 at 10:40 AM
Reposted by Andrea Doddi
Last week, our latest @biorxivpreprint.bsky.social preprint was released, a joint-venture of @antonkraege.bsky.social & @wolki95.bsky.social and co-directed by @nicksnelders.bsky.social a 🧵
Undermining the cry for help: The phytopathogenic fungus Verticillium dahliae secretes an antimicrobial effector protein to undermine host recruitment of antagonistic Pseudomonas bacteria https://www.biorxiv.org/content/10.1101/2025.06.09.658588v1
June 16, 2025 at 1:24 PM
Reposted by Andrea Doddi
Undermining the cry for help: The phytopathogenic fungus Verticillium dahliae secretes an antimicrobial effector protein to undermine host recruitment of antagonistic Pseudomonas bacteria https://www.biorxiv.org/content/10.1101/2025.06.09.658588v1
June 11, 2025 at 11:03 PM
Reposted by Andrea Doddi
Curious about my PhD research @parkergroup.bsky.social? The paper is available as preprint on bioRxiv now!
🔬 The interaction between scopoletin and fungal endophyte F80 rescues plant growth under iron-limiting conditions by resolving the iron mobility bottleneck.
📝 www.biorxiv.org/content/10.1...
Cooperation between a root fungal endophyte and host-derived coumarin scopoletin mediates Arabidopsis iron nutrition
Iron acquisition is a critical challenge for plants, especially in iron-deficient soils. Recent research underscores the importance of root-exuded coumarins in modulating the root microbiome community...
www.biorxiv.org
June 7, 2025 at 8:27 AM
Reposted by Andrea Doddi
Excited to share my new Tansley Review @newphyt.bsky.social on emerging single-cell and spatial omics technologies, many of which are just beginning to be applied in plant biology! Big opportunities lie ahead for the field. [1/n] 

nph.onlinelibrary.wiley.com/doi/10.1111/...
Exploring the untapped potential of single‐cell and spatial omics in plant biology
Advances in single-cell and spatial omics technologies have revolutionised biology by revealing the diverse molecular states of individual cells and their spatial organization within tissues. The fie...
nph.onlinelibrary.wiley.com
May 22, 2025 at 6:46 AM
Reposted by Andrea Doddi
🌿We are thrilled to share that Prof. Miltos Tsiantis @mpipz.bsky.social has been elected as new Fellow of the @royalsociety.org in recognition to his work on plant organ development 🌿🥳 🎉Congratulations! 👏👏 👉 bit.ly/435gPjT #plantsci
May 20, 2025 at 12:33 PM
Reposted by Andrea Doddi
Are you interested in molecular plant microbe interactions and would like to study effector biology in Fusarium-lettuce patho-system? Consider this PhD position @uva.nl in the lab of Martijn Rep as part of our recently funded joint TKI project werkenbij.uva.nl/en/vacancies...
Vacancy — PhD Candidate Plant-pathogenic Fungus Interaction
Are you an early-career researcher with a passion for molecular plant or microbial science? Would you like to take on a highly relevant project in the field of plant-pathogen interactions? Then we hav...
werkenbij.uva.nl
May 21, 2025 at 1:44 PM
Reposted by Andrea Doddi
We dive into the dynamics of #starships 🚀 in a fungal pathogen to ask: how might these giant #transposons impact human health? We find they drive genome-wide variation, encode clinically-relevant traits and even transpose within the same strain! 🍄🧪 out today in mBio #goteam doi.org/10.1128/mbio...
Giant transposons promote strain heterogeneity in a major fungal pathogen | mBio
No “one size fits all” option exists for treating fungal infections in large part due to genetic and phenotypic variability among strains. Accounting for strain heterogeneity is thus fundamental for d...
doi.org
May 13, 2025 at 8:11 AM
Reposted by Andrea Doddi
Excited to share our latest preprint 🥳
Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen
@danielcroll.bsky.social
#TESky
www.biorxiv.org/content/10.1...
Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen
Transposable elements (TEs) can drive the evolution of host-pathogen interactions and gains in antimicrobial resistance. However, how adaptive TEs arise in populations and historical contingencies aff...
www.biorxiv.org
April 9, 2025 at 5:31 AM
Reposted by Andrea Doddi
Last week, our newest @biorxiv-plants.bsky.social‬ preprint saw the light, led by @wolki95.bsky.social and co-directed by Kathrin Wippel (SILS, Amsterdam): A gnotobiotic system reveals multifunctional effector roles in plant-fungal pathogen dynamics www.biorxiv.org/content/10.1...
A gnotobiotic system reveals multifunctional effector roles in plant-fungal pathogen dynamics
Plants host diverse microbiota that influence physiological processes and can enhance resilience against invading pathogens that, in turn, evolved effector proteins to manipulate host microbiota in th...
www.biorxiv.org
April 4, 2025 at 1:59 PM
Reposted by Andrea Doddi
A gnotobiotic system reveals multifunctional effector roles in plant-fungal pathogen dynamics https://www.biorxiv.org/content/10.1101/2025.03.27.645772v1
March 28, 2025 at 11:03 AM
Reposted by Andrea Doddi
Finally!
Im so excited to present to culmination of many years of work from the fantastic Defeng Shen and some great collaborators. For details, I have made a digested thread below, but if you are more interested feel free to reach out (and read the paper of course).
www.science.org/doi/10.1126/...
Apoplastic barriers are essential for nodule formation and nitrogen fixation in Lotus japonicus
Establishment of the apoplastic root barrier known as the Casparian strip occurs early in root development. In legumes, this area overlaps with nitrogen-fixing nodule formation, which raises the possi...
www.science.org
March 21, 2025 at 5:53 AM
Reposted by Andrea Doddi
Time to move on!

Heading to Zürich🇨🇭 where I will join the group of @mvanderheijden.bsky.social for my second post-doc.

I am very thankful for my time with @teamthomma.bsky.social at the University of Cologne. I learned a lot and cannot wait to share more of our findings soon.

So long Köln…
January 31, 2025 at 10:36 AM
Reposted by Andrea Doddi
📣New year, new preprint @biorxiv-microbiol.bsky.social 🎉! A study led by the brilliant @yukiyosato.bsky.social showing that Starship giant transposons dominate plastic genomic regions in the fungal plant pathogen Verticillium dahliae and drive virulence evolution. 🧵[1/12] doi.org/10.1101/2025...
Starship giant transposons dominate plastic genomic regions in a fungal plant pathogen and drive virulence evolution
Starships form a recently discovered superfamily of giant transposons in Pezizomycotina fungi, implicated in mediating horizontal transfer of diverse cargo genes between fungal genomes. Their elusive nature has long obscured their significance, and their impact on genome evolution remains poorly understood. Here, we reveal a surprising abundance and diversity of Starships in the phytopathogenic fungus Verticillium dahliae. Remarkably, Starships dominate the plastic genomic compartments involved in host colonization, are enriched in virulence-associated genes, and exhibit genetic and epigenetic characteristics associated with adaptive genome evolution. We further uncover extensive horizontal transfer of Starships between Verticillium species and, strikingly, from distantly related Fusarium fungi. Finally, we demonstrate how Starship activity facilitated the de novo formation of a novel virulence gene. Our findings illuminate the profound influence of Starship dynamics on fungal genome evolution and the development of virulence. ### Competing Interest Statement The authors have declared no competing interest.
doi.org
January 10, 2025 at 2:23 PM
Reposted by Andrea Doddi
We published a commentary article at Cell Host Microbe.
- Bacillus produces Histamin

- Histamin stimulates maize p-coumarate

- P-coumarate triggers bacterial selenium nano-particles (SeNPs)

- SeNPs recruit PGP bacteria including Bacillus

Free access link↓
authors.elsevier.com/a/1kFOe6t8JE...
December 12, 2024 at 12:49 AM