Agustin Corbat
@acorbat.bsky.social
Physicist, image analyst and 🔬 | Automation and teaching fan #Python #Pi | #bioimage #analyst at @biif_sweden
Wrapping up an amazing day at the @latambioimaging.bsky.social meeting! Honored to witness the presentation of the Honoris Causa degree to the legendary Carlos Bustamante. A truly inspiring way to conclude today's events. 👏
#Bioimaging #CarlosBustamante #Science #HonorisCausa #LABI
#Bioimaging #CarlosBustamante #Science #HonorisCausa #LABI
November 10, 2025 at 8:21 PM
Wrapping up an amazing day at the @latambioimaging.bsky.social meeting! Honored to witness the presentation of the Honoris Causa degree to the legendary Carlos Bustamante. A truly inspiring way to conclude today's events. 👏
#Bioimaging #CarlosBustamante #Science #HonorisCausa #LABI
#Bioimaging #CarlosBustamante #Science #HonorisCausa #LABI
Incredible kickoff by Lia Pietrasanta at the @latambioimaging.bsky.social meeting! Fantastic insights into microscopy in the region. Ready for an inspiring week!
#Bioimaging #Microscopy #LABI
#Bioimaging #Microscopy #LABI
November 10, 2025 at 3:32 PM
Incredible kickoff by Lia Pietrasanta at the @latambioimaging.bsky.social meeting! Fantastic insights into microscopy in the region. Ready for an inspiring week!
#Bioimaging #Microscopy #LABI
#Bioimaging #Microscopy #LABI
Reposted by Agustin Corbat
We just hit 10 workshops submitted, with almost two weeks to go! Help us get to 20 before the last-day frantic mad dash? Teach your favorite tool today!
Halfway to I2K is BACK, friends of all kinds! Last year, 650 people attended 30+ TOTALLY FREE image analysis workshops of all kinds, across many timezones.
If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.
If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.
#HappyFluorescenceFriday!
#microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications!
Learn more & sign up: buff.ly/esGIotD
#microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications!
Learn more & sign up: buff.ly/esGIotD
October 20, 2025 at 2:52 PM
We just hit 10 workshops submitted, with almost two weeks to go! Help us get to 20 before the last-day frantic mad dash? Teach your favorite tool today!
I presented my views on Facilities at the 🔬Democritizing #Microscopy in LatAm #BiologistsWorkshops!
Facilities aren't just equipment hubs; they also hold the Institutional Memory.
You can find the slides with notes 👇: doi.org/10.5281/zeno...
And a summary below!🧵
Facilities aren't just equipment hubs; they also hold the Institutional Memory.
You can find the slides with notes 👇: doi.org/10.5281/zeno...
And a summary below!🧵
October 17, 2025 at 7:43 PM
I presented my views on Facilities at the 🔬Democritizing #Microscopy in LatAm #BiologistsWorkshops!
Facilities aren't just equipment hubs; they also hold the Institutional Memory.
You can find the slides with notes 👇: doi.org/10.5281/zeno...
And a summary below!🧵
Facilities aren't just equipment hubs; they also hold the Institutional Memory.
You can find the slides with notes 👇: doi.org/10.5281/zeno...
And a summary below!🧵
Huge, heartfelt thanks to the @biologists.bsky.social for hosting the Democratizing Microscopy in Latin America workshop!
#BiologistsWorkshops
#BiologistsWorkshops
Thank you to the organisers Constadina Arvanitis, @mariodelr.bsky.social, Helena De la Torre, @marianadeniz.bsky.social, María Fernanda Latorre Barragán and Licyel Lenny Paulas Condori.
Find out more about this week's Workshop: biologists.com/workshops/gl...
#BiologistsWorkshops
Find out more about this week's Workshop: biologists.com/workshops/gl...
#BiologistsWorkshops
October 17, 2025 at 6:47 PM
Huge, heartfelt thanks to the @biologists.bsky.social for hosting the Democratizing Microscopy in Latin America workshop!
#BiologistsWorkshops
#BiologistsWorkshops
Reposted by Agustin Corbat
Last night we learnt about 'Microscopía Para Todos' from Licyel Paulas & 'Educaciencia' from Haydee Hernández Aviña, followed by a chance to play with their microscopes.
Read more about Educaciencia:
focalplane.biologists.com/2024/08/02/i...
#BiologistsWorkshops
Read more about Educaciencia:
focalplane.biologists.com/2024/08/02/i...
#BiologistsWorkshops
October 15, 2025 at 2:21 PM
Last night we learnt about 'Microscopía Para Todos' from Licyel Paulas & 'Educaciencia' from Haydee Hernández Aviña, followed by a chance to play with their microscopes.
Read more about Educaciencia:
focalplane.biologists.com/2024/08/02/i...
#BiologistsWorkshops
Read more about Educaciencia:
focalplane.biologists.com/2024/08/02/i...
#BiologistsWorkshops
Reposted by Agustin Corbat
Our attendees receive a special welcome in Baños, including our Workshop organiser, Licyel Lenny Paulas Condori. Licyel set up ‘Microscopia Para Todos’, a STEAM outreach programme in Bolivia.
Read more about Licyel & her project⤵️:
focalplane.biologists.com/2023/04/25/a...
#BiologistsWorkshops
Read more about Licyel & her project⤵️:
focalplane.biologists.com/2023/04/25/a...
#BiologistsWorkshops
October 12, 2025 at 8:27 PM
Our attendees receive a special welcome in Baños, including our Workshop organiser, Licyel Lenny Paulas Condori. Licyel set up ‘Microscopia Para Todos’, a STEAM outreach programme in Bolivia.
Read more about Licyel & her project⤵️:
focalplane.biologists.com/2023/04/25/a...
#BiologistsWorkshops
Read more about Licyel & her project⤵️:
focalplane.biologists.com/2023/04/25/a...
#BiologistsWorkshops
Reposted by Agustin Corbat
Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.
I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social
research.pasteur.fr/en/team/imag...
⬇️
I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social
research.pasteur.fr/en/team/imag...
⬇️
October 13, 2025 at 8:10 AM
Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.
I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social
research.pasteur.fr/en/team/imag...
⬇️
I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social
research.pasteur.fr/en/team/imag...
⬇️
Reposted by Agustin Corbat
The attendees are gathered, and the meeting room is ready.
The next organiser that we are highlighting is Fernanda Latorre Barragán. You can read about Fer’s career in this interview with @marianadeniz.bsky.social from 2023.
#BiologistsWorkshops
focalplane.biologists.com/2023/07/25/a...
The next organiser that we are highlighting is Fernanda Latorre Barragán. You can read about Fer’s career in this interview with @marianadeniz.bsky.social from 2023.
#BiologistsWorkshops
focalplane.biologists.com/2023/07/25/a...
October 12, 2025 at 3:53 PM
The attendees are gathered, and the meeting room is ready.
The next organiser that we are highlighting is Fernanda Latorre Barragán. You can read about Fer’s career in this interview with @marianadeniz.bsky.social from 2023.
#BiologistsWorkshops
focalplane.biologists.com/2023/07/25/a...
The next organiser that we are highlighting is Fernanda Latorre Barragán. You can read about Fer’s career in this interview with @marianadeniz.bsky.social from 2023.
#BiologistsWorkshops
focalplane.biologists.com/2023/07/25/a...
Reposted by Agustin Corbat
🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️
jobs.helsinki.fi/job/Helsinki...
#jobopening
jobs.helsinki.fi/job/Helsinki...
#jobopening
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
jobs.helsinki.fi
October 10, 2025 at 1:58 PM
🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️
jobs.helsinki.fi/job/Helsinki...
#jobopening
jobs.helsinki.fi/job/Helsinki...
#jobopening
¡Atención comunidad científica de Latam! 🌎🔬
Desde Latin American Bioimaging (@latambioimaging.bsky.social) organizamos un evento de networking único para conectar, colaborar y crecer.
¿Sos estudiante, estás en tu doctorado o ya investigás? ¡Esto es para vos! Abro hilo 👇
Desde Latin American Bioimaging (@latambioimaging.bsky.social) organizamos un evento de networking único para conectar, colaborar y crecer.
¿Sos estudiante, estás en tu doctorado o ya investigás? ¡Esto es para vos! Abro hilo 👇
🔬 Encuentro de Microscopía y Colaboración Científica con Estudiantes e Investigadores.
Orientado a estudiantes de grado, posgrado e investigadores, este encuentro propone dialogar sobre investigación, formación y colaboración regional.
📆 12 de noviembre | 14:00 a 16:30
Orientado a estudiantes de grado, posgrado e investigadores, este encuentro propone dialogar sobre investigación, formación y colaboración regional.
📆 12 de noviembre | 14:00 a 16:30
October 9, 2025 at 6:00 PM
¡Atención comunidad científica de Latam! 🌎🔬
Desde Latin American Bioimaging (@latambioimaging.bsky.social) organizamos un evento de networking único para conectar, colaborar y crecer.
¿Sos estudiante, estás en tu doctorado o ya investigás? ¡Esto es para vos! Abro hilo 👇
Desde Latin American Bioimaging (@latambioimaging.bsky.social) organizamos un evento de networking único para conectar, colaborar y crecer.
¿Sos estudiante, estás en tu doctorado o ya investigás? ¡Esto es para vos! Abro hilo 👇
Reposted by Agustin Corbat
@nfdi4bioimage.bsky.social Task Area Leaders Josh Moore and Christian Tischer will introduce participants to the history and basics of OME-Zarr at the international 2025 OME-NGFF Symposium from November 10–11 in Zurich, SW.
Register here:
👉 www.ema.uzh.ch/de/register/...
Picture by BioVisionCenter
Register here:
👉 www.ema.uzh.ch/de/register/...
Picture by BioVisionCenter
October 8, 2025 at 12:21 PM
@nfdi4bioimage.bsky.social Task Area Leaders Josh Moore and Christian Tischer will introduce participants to the history and basics of OME-Zarr at the international 2025 OME-NGFF Symposium from November 10–11 in Zurich, SW.
Register here:
👉 www.ema.uzh.ch/de/register/...
Picture by BioVisionCenter
Register here:
👉 www.ema.uzh.ch/de/register/...
Picture by BioVisionCenter
Reposted by Agustin Corbat
Join the new plugin sustainability initiative!
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Meeting schedule
We hold regular meetings, the timings of which are available on our public calendar. If you are using napari or interested in how napari could be used in your work, please join one of our regular comm...
napari.org
October 6, 2025 at 3:57 AM
Join the new plugin sustainability initiative!
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Reposted by Agustin Corbat
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
Bioimage Analysis Specialist | King's College London
www.kcl.ac.uk
September 29, 2025 at 9:48 AM
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
Reposted by Agustin Corbat
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group
The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...
cvpd.github.io
September 30, 2025 at 11:01 AM
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Reposted by Agustin Corbat
✍ If you're having difficulty writing #BioimageAnalysis code that enables others to follow your workflow, have a look at @haesleinhuepf.bsky.socials slides on „Reproducible Bio-Image Analysis using Python, Napari, Jupyter and AI“ from the #EMBOlsm25.
To the slides: 👉 doi.org/10.5281/zeno...
To the slides: 👉 doi.org/10.5281/zeno...
September 10, 2025 at 12:43 PM
✍ If you're having difficulty writing #BioimageAnalysis code that enables others to follow your workflow, have a look at @haesleinhuepf.bsky.socials slides on „Reproducible Bio-Image Analysis using Python, Napari, Jupyter and AI“ from the #EMBOlsm25.
To the slides: 👉 doi.org/10.5281/zeno...
To the slides: 👉 doi.org/10.5281/zeno...
Reposted by Agustin Corbat
Our new collection offers cell biologists practical, expert-driven guidance and best practices in the design, execution, and analysis of experiments, and the subsequent communication of their results to their peers. 👉 rupress.org/jcb/collecti...
#Reproducibility
#Reproducibility
September 3, 2025 at 2:15 PM
Our new collection offers cell biologists practical, expert-driven guidance and best practices in the design, execution, and analysis of experiments, and the subsequent communication of their results to their peers. 👉 rupress.org/jcb/collecti...
#Reproducibility
#Reproducibility
Thrilled to announce that I'm back in Buenos Aires and open for image & data analysis projects!
My focus is turning images from bioscience, ecology, & more into actionable data. I'm available for collaborations in Argentina and internationally.
Check out my portfolio and contact:
acorbat.github.io
My focus is turning images from bioscience, ecology, & more into actionable data. I'm available for collaborations in Argentina and internationally.
Check out my portfolio and contact:
acorbat.github.io
iPortfolio Bootstrap Template - Index
acorbat.github.io
August 26, 2025 at 2:54 PM
Thrilled to announce that I'm back in Buenos Aires and open for image & data analysis projects!
My focus is turning images from bioscience, ecology, & more into actionable data. I'm available for collaborations in Argentina and internationally.
Check out my portfolio and contact:
acorbat.github.io
My focus is turning images from bioscience, ecology, & more into actionable data. I'm available for collaborations in Argentina and internationally.
Check out my portfolio and contact:
acorbat.github.io
Reposted by Agustin Corbat
Next one in the #GloBIAS seminar series: Behind the Scenes at SciLifeLab BIIF: Lessons from Managing a National Bioimage Analysis Support Unit. Presented by Anna Klemm, head of BioImage Informatics Infrastructure Unit, Uppsala University, Sweden
Wednesday, 27th of August, 2pm CEST
Wednesday, 27th of August, 2pm CEST
August 20, 2025 at 3:04 PM
Next one in the #GloBIAS seminar series: Behind the Scenes at SciLifeLab BIIF: Lessons from Managing a National Bioimage Analysis Support Unit. Presented by Anna Klemm, head of BioImage Informatics Infrastructure Unit, Uppsala University, Sweden
Wednesday, 27th of August, 2pm CEST
Wednesday, 27th of August, 2pm CEST
Reposted by Agustin Corbat
We're happy to announce the 2025 International OME-NGFF workshop 🎉
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
August 25, 2025 at 9:07 AM
We're happy to announce the 2025 International OME-NGFF workshop 🎉
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
Se extendió el deadline!
Aprovechen para aplicar a este curso de análisis de imágenes 3D en Chile🔬. Todavía hay ayudas economicas para viajes🛩️!
Más información en los links 👇...
Aprovechen para aplicar a este curso de análisis de imágenes 3D en Chile🔬. Todavía hay ayudas economicas para viajes🛩️!
Más información en los links 👇...
🚨 Deadline extended!
You now have until August 8 to apply for the Light-Sheet Image Analysis Workshop (Jan 5–9, 2026) at Universidad Mayor in Santiago de Chile with the support of CZI @cziscience.bsky.social and @lisium-chile.bsky.social
1/3
You now have until August 8 to apply for the Light-Sheet Image Analysis Workshop (Jan 5–9, 2026) at Universidad Mayor in Santiago de Chile with the support of CZI @cziscience.bsky.social and @lisium-chile.bsky.social
1/3
Light-Sheet Image Analysis Workshop 2026 – lightsheetchile
lightsheetchile.cl
July 25, 2025 at 2:36 AM
Se extendió el deadline!
Aprovechen para aplicar a este curso de análisis de imágenes 3D en Chile🔬. Todavía hay ayudas economicas para viajes🛩️!
Más información en los links 👇...
Aprovechen para aplicar a este curso de análisis de imágenes 3D en Chile🔬. Todavía hay ayudas economicas para viajes🛩️!
Más información en los links 👇...
Reposted by Agustin Corbat
Thanks to everyone in the #GloBIAS Survey 24 workgroup! Lots of work, fun, and sometimes a bit of time zone confusion. But we got there ;-)
Preprint alert! Want to hear more about the coolest new society on the block? You should check out our new preprint discussing @globias.bsky.social ! Hop into 🧵 for a couple quick highlights (1/x):
GloBIAS: strengthening the foundations of BioImage Analysis
There is a global need for BioImage Analysis (BIA) as advances in life sciences increasingly rely on cutting-edge imaging systems that have dramatically expanded the complexity and dimensionality of b...
arxiv.org
July 16, 2025 at 2:17 PM
Thanks to everyone in the #GloBIAS Survey 24 workgroup! Lots of work, fun, and sometimes a bit of time zone confusion. But we got there ;-)
📣El preprint de @globias.bsky.social esta disponible en arXiv! Fue un placer poder trabajar con un grupo internacionial en este proyecto!!!
En el trabajo presentamos resultados de una encuesta indagando cuales son las necesidades de analistas de bioimagenes y como GloBIAS busca trabajar en ellas.
En el trabajo presentamos resultados de una encuesta indagando cuales son las necesidades de analistas de bioimagenes y como GloBIAS busca trabajar en ellas.
Preprint alert! Want to hear more about the coolest new society on the block? You should check out our new preprint discussing @globias.bsky.social ! Hop into 🧵 for a couple quick highlights (1/x):
GloBIAS: strengthening the foundations of BioImage Analysis
There is a global need for BioImage Analysis (BIA) as advances in life sciences increasingly rely on cutting-edge imaging systems that have dramatically expanded the complexity and dimensionality of b...
arxiv.org
July 11, 2025 at 3:08 PM
📣El preprint de @globias.bsky.social esta disponible en arXiv! Fue un placer poder trabajar con un grupo internacionial en este proyecto!!!
En el trabajo presentamos resultados de una encuesta indagando cuales son las necesidades de analistas de bioimagenes y como GloBIAS busca trabajar en ellas.
En el trabajo presentamos resultados de una encuesta indagando cuales son las necesidades de analistas de bioimagenes y como GloBIAS busca trabajar en ellas.