#soil-root-microbiome
It was great to join #NorwichResearchPark colleagues and the #agri community at a recent workshop on soil health within the agricultural system. Scientists from the Earlham Institute joined discussions on the applications of research and innovations for #soil #microbiome and root-soil interactions.
Norwich Research Park Agri-Tech Week Workshop
As part of Agri-Tech Week 2025, AIP LLP hosted a 1-day workshop with the aim of generating ideas that could improve the soil health of the nation’s farms.
buff.ly
November 6, 2025 at 11:01 AM
I am glad to present our new @Root2Res preprint: Evaluation of combined root exudate and microbiome from the same soil-grown plant www.biorxiv.org/content/10.1... with video abstract at youtu.be/Rkif6BbJmGc?...
Evaluation of combined root exudate and rhizosphere microbiota sampling approaches to elucidate plant-soil-microbe interactions
### Competing Interest Statement The authors have declared no competing interest. Horizon Europe: Root2Resilience, N°101060124 ERC Starting Grant Phyto Trace, project number 801954 German Research...
www.biorxiv.org
November 1, 2025 at 3:32 PM
I've been working on this then it hit me. Is this RhizoVision Tron?

With open hardware and software, we can accelerate root, soil, and microbiome research.

First, we have to solve the segmentation challenge of roots on soil so everyone can do it.

www.rhizovision.com
September 28, 2025 at 6:36 PM
Trends in Plant Science Special Issue Part 2: Root biology and soil health🌲 spkl.io/63329ATEMP

@cp-trendsplantsci.bsky.social
September 24, 2025 at 7:00 PM
Heat Stress and Soil Microbial Disturbance Influence Soybean Root Metabolite, Microbiome Profiles, and Nodulation | bioRxiv
Heat Stress and Soil Microbial Disturbance Influence Soybean Root Metabolite, Microbiome Profiles, and Nodulation | bioRxiv
Heat stress is a major limiting factor for soybean productivity worldwide. Recent studies have highlighted the critical role of the plant microbiome in enhancing plant resilience to heat stress. However, our understanding of the molecular and physiological mechanisms underlying root-microbiome interactions under heat stress remains limited. To elucidate the role of native soil microbes in the heat tolerance of soybean genotypes, we analyzed rhizosphere bacterial and fungal communities via 16S rRNA and ITS sequencing, and characterized root metabolites and anatomical traits in response to microbiome composition and heat stress. Soybean plants were grown under controlled conditions in either natural soil containing native microbiota or in microbiome-disturbed soil (via 3-hour autoclaving), under both optimal and elevated temperature regimes. Alpha and beta diversity analyses revealed significant microbial shifts between treatments. Distinct clustering of bacterial, fungal, and metabolite profiles was observed under high temperature and microbial disturbance. Nodule-forming bacteria such as Rhizobium and Janthinobacterium were markedly suppressed, and belowground traits exhibited sensitivity, with significantly reduced nodule numbers and nodulation efficiency under high temperature and soil microbial perturbation. Non-targeted root metabolomics identified 372 differentially accumulated metabolites. Integrative multi-omics analysis revealed associations between metagenomic profiles, metabolite levels, and nitrogen-fixation traits, implying a coordinated modulation of root physiological processes. These findings contribute to a growing understanding of how heat stress interacts with rhizosphere microbial communities and may support future efforts in breeding climate-resilient soybean cultivars.
sco.lt
August 28, 2025 at 7:21 PM
Microbial diversity declined over time, but leaf-associated communities exhibited adaptation, increasing in Actinobacteriota. Spatially, the microbiome displayed a diversity gradient from soil to plant, with root and leaf communities representing subsets of the bulk soil taxa.
August 22, 2025 at 2:30 PM
Variations in the root-soil system influence the grapevine holobiont by shaping plant physiology and root microbiome https://www.biorxiv.org/content/10.1101/2025.08.14.670050v1
August 20, 2025 at 6:03 PM
Variations in the root-soil system influence the grapevine holobiont by shaping plant physiology and root microbiome https://www.biorxiv.org/content/10.1101/2025.08.14.670050v1
August 20, 2025 at 6:03 PM
It was a fantastic start to establishing the 1. core plot at Kasetsart University's plot near the #Sakaerat Biosphere Res. It will help us understand the effects of EM-tree admixture #Dipterocarpaceae on soil functioning in AM-dominated dry evergreen tropical #forests. #roots #mycorrhiza #soilhealth
August 8, 2025 at 10:16 AM
"The plant-associated soil and root microbiome, collectively known as the phytomicrobiome, forms a HOLOBIONT with the plant, engaging in symbiotic, competitive, or neutral interactions."

onlinelibrary.wiley.com/doi/pdf/10.1...
A New Frontier for Plant‐Microbe Interaction Under Changing Climate Conditions
Click on the article title to read more.
onlinelibrary.wiley.com
August 1, 2025 at 5:57 PM
Chapter 3 – Microbial allies

🦠Root microbiome analyses revealed S. inaequidens selects specific bacterial taxa across soil, rhizosphere & endosphere.

Some taxa (e.g., Pseudomonas, Rhizobiaceae) are known plant growth-promoting microbes.

➡️ Microbes may contribute to invasion success.
July 30, 2025 at 3:16 PM
Really like that this study looked at multiple components. #Phylosymbiosis was significant in bacterial & fungal root microbiomes. It also notably explained more variance in microbiome
composition than conifer host traits or soil physicochemical properties. ✅ apsjournals.apsnet.org/doi/pdf/10.1...
apsjournals.apsnet.org
July 27, 2025 at 7:51 PM
30 of
Dane Wigington @RealGeoEngWatch
~
"...because it's toxic. It's killing root systems and soil microbiome
.
Let's keep going from MSN
.
farmers devastated as extreme weather damages crops. 'It's going to possibly become worse'
.
No, it's going to..."
www.msn.com/en-us/weathe...
July 27, 2025 at 3:11 AM
New Tansley review out in @newphyt.bsky.social with @fdiniandreote.bsky.social and Gabriel Castrillo! We explore how the root is shaped by dialogue with soil microbes—highlighting emerging mechanisms and future research directions in root plasticity and microbiome interactions.
tinyurl.com/38mkyx5t
Microbial drivers of root plasticity
Soils are highly heterogeneous and dynamic systems, experiencing a constant flow of plant root exudates and moisture fluctuations that affect nutrient distribution, soil physicochemical properties, a...
nph.onlinelibrary.wiley.com
July 21, 2025 at 12:08 PM
Heat Stress and Soil Microbial Disturbance Influence Soybean Root Metabolite, Microbiome Profiles, and Nodulation https://www.biorxiv.org/content/10.1101/2025.07.13.664636v1
July 14, 2025 at 3:02 PM
Heat Stress and Soil Microbial Disturbance Influence Soybean Root Metabolite, Microbiome Profiles, and Nodulation https://www.biorxiv.org/content/10.1101/2025.07.13.664636v1
July 14, 2025 at 3:02 PM
Paper number seven of my PhD, newly published within Scientific Reports 🧪📃
In the present study we analysed the root nodule microbiome of a 30 year Alnus glutinosa chronosequence planted upon heavy metal polluted soil 🌳🦠
@newcastleuni.bsky.social @sagencl.bsky.social

www.nature.com/articles/s41...
July 3, 2025 at 8:16 AM
Updated preprint: MMF1 is "a microbiota receptor” through which Arabidopsis plants perceive their soil microbiome. Perception optimises root microbiome composition, immune status and ultimately leads to better growth. www.biorxiv.org/content/10.1...
A TNL receptor mediates microbiome feedbacks in Arabidopsis
Plant performance depends on the soil microbiome. While microbiome feedbacks are well documented, the mechanisms by which plants perceive and mediate these feedbacks remain unclear. We established a f...
www.biorxiv.org
June 30, 2025 at 6:27 AM
📃Scientific paper: Long-term push–pull cropping system shifts soil and maize-root microbiome diversity paving way to resilient farming system

Ref.: BioMed Central, 2024

➡️ Continued on ES/IODE
June 26, 2025 at 10:00 AM
There is no way to forcefully decompact clay soil. All tilling does is create air pockets between compacted clay. Organic matter, time, and a healthy microbiome are the only things that work. Plant plants with strong and deep root networks that support local mycorrhizal fungi and mulch thickly.
June 21, 2025 at 10:56 PM
Using MRI and PET scanning to follow rhizodeposition through unique root types (seminal/primary/crown) into the soil - so awesome as an attempt to link to the microbiome communities on each root type!
June 18, 2025 at 9:41 AM
45a of
single greatest drought-causing factor climate engineering
rain is toxic killing soil microbiome and root systems
my own efforts here I could plant two to 300 trees in a day— i would have a 95% success rate
success rate for about the last decade— zero zip
@RealGeoEngWatch
June 8, 2025 at 7:32 AM
6a of
climate engineering on top of that that's poisoning the forest with toxic rain, killing soil microbiome, killing root systems, that's why so many trees blow over every time the wind blows, their branches are brittle their hydrology is breaking down inside
@RealGeoEngWatch
June 8, 2025 at 12:47 AM
Root biology and soil health for a sustainable future 🌱

This @cp-trendsplantsci.bsky.social special issue explores a range of topics on the role of root and soil health and the numerous interactions that take place below ground: www.cell.com/trends/plant...
May 15, 2025 at 6:40 PM
#translationalscience approach - screening for molecular keyplayers that modualte at cellular level #soil-root-microbiome continuum @barleymicrobreed.bsky.social @bokuvienna.bsky.social
SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana https://www.biorxiv.org/content/10.1101/2025.04.25.650715v1
May 1, 2025 at 5:06 PM