#galaxyproject
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galaxyproject.bsky.social
RSpace joins the Galaxy
https://galaxyproject.org/news/2025-06-23-rspace-integration/

@researchspace.com
##UseGalaxy ##GalaxyProject ##EOSC ##ELN ##RDM ##RSpace
RSpace joins the Galaxy
October 30, 2025 at 1:21 PM
galaxyproject.bsky.social
My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
https://galaxyproject.org/news/2025-07-22-ming-li-internship/

##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##Genomics ##GenomeAssembly ##GenomeAnnotation ##TrainingProgram (1/2)
Exploring Genomics with Galaxy: A Six-Week Internship Journey
My internship experience with assembling genomes and annotating them during a 6 week internship
galaxyproject.org
October 21, 2025 at 7:57 AM
galaxyproject.bsky.social
Comprehensive Single-Cell Reference Atlases Ready for Import
https://galaxyproject.org/news/2025-10-16-tabula-atlas/

##UseGalaxy ##GalaxyProject ##EOSC ##UniFreiburg ##Single-cell ##tabula_sapiens ##Tabula_muris_senis
Tabula Sapiens and Tabula Muris Senis Atlases Now Available in Galaxy
Comprehensive Single-Cell Reference Atlases Ready for Import
galaxyproject.org
October 20, 2025 at 8:48 AM
galaxyproject.bsky.social
Flexynesis: bridging multi-omics complexity with transparent AI for Cancer research and beyond
https://galaxyproject.org/news/2025-10-16-flexynesis-nature-comms/

##UseGalaxy ##GalaxyProject ##EOSC ##UniFreiburg ##NatureCommunications ##ScientificResearch ##deeplearning ##precision_medicine ##open_science
graphical abstract
October 20, 2025 at 8:49 AM
galaxyproject.bsky.social
1–3 Oct 2025, Freiburg: European Galaxy Days, ELIXIR Galaxy, and EuroScienceGateway members convened to align roadmaps and turn plans into solutions, tools, and workflows through talks, demos, and a CoFest.
https://galaxyproject.org/news/2025-10-15-egd2025/

##UseGalaxy ##GalaxyProject ##EOSC (1/2)
EGD2025 Group photo taken by Pavan Videm
October 17, 2025 at 1:50 PM
galaxyproject.bsky.social
Open-Source Visualization for Imaging-Based Spatial Transcriptomics
http://galaxyproject.org/news/2025-04-26-bellavista-it/

##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway
BellaVista interactive tool now available in Galaxy
Open-Source Visualization for Imaging-Based Spatial Transcriptomics
galaxyproject.org
October 13, 2025 at 10:16 AM
galaxyproject.bsky.social
Thanks to TIaaS, our RNA-Seq workshops run smoothly—no more delays, just effective hands-on learning.
https://galaxyproject.org/news/2025-05-23-tiaas-success-story-toivonen/

##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway ##training ##infrastructure ##teaching
Training Infrastructure as a service (TIaaS) Feedback from Dr. Janne M
Thanks to TIaaS, our RNA-Seq workshops run smoothly—no more delays, just effective hands-on learning.
galaxyproject.org
October 13, 2025 at 2:07 PM
galaxyproject.bsky.social
Nicola Soranzo presented 'Making Galaxy workflows sustainable and FAIR' on Day 2 of European Galaxy Days.
Read more: https://www.earlham.ac.uk/research-project/elixir-uk

##EGD2025 ##galaxy_workflows ##sustainable ##galaxyproject ##workflows ##eosc ##fair ##open_science
Making Galaxy workflows sustainable and FAIR
October 2, 2025 at 12:33 PM
galaxyproject.bsky.social
On Day 2 of European Galaxy Days, Jérôme Detoc presented 'Galaxy Earth-System'.
Read more: https://earth-system.usegalaxy.eu/

##EGD2025 ##earth_system ##galaxyproject ##eosc ##fair ##open_science
Galaxy Earth-System
October 2, 2025 at 2:12 PM
galaxyproject.bsky.social
On Day 2 of European Galaxy Days, Arash Kadkhodaei presented 'Serving locally hosted LLMs with Galaxy'.

##EGD2025 ##ai ##llm ##galaxyproject ##eosc ##fair ##machine_learning ##open_science
Serving locally hosted LLMs with Galaxy
October 2, 2025 at 8:48 AM
galaxyproject.bsky.social
On Day 2 of European Galaxy Days, Yvan Le Bras presented Galaxy Ecology: 2025 Update.
Read more: https://ecology.usegalaxy.eu/

##EGD2025 ##ecology ##galaxyproject ##galaxy_ecology ##eosc ##fair ##open_science
Galaxy Ecology: 2025 Update
October 2, 2025 at 12:34 PM
galaxyproject.bsky.social
On Day 1 of European Galaxy Days, Leonid Kostrykin presented Streamlining the User Experience for Reproducible Image Analysis in Galaxy.

##image_analysis ##EGD2025 ##galaxyproject ##eosc ##fair ##open_science
Streamlining the User Experience for Reproducible Image Analysis in Galaxy
October 1, 2025 at 12:54 PM
galaxyproject.bsky.social
On Day 1 of European Galaxy Days, Mirela Minkova presented On-demand, Reproducible Galaxy Instances in a Secure Environment for the Dutch Scientific Community.
Read more: https://galaxyproject.org/news/2025-07-02/

##scientific ##EGD2025 ##dutch ##galaxyproject ##eosc ##fair ##community (1/2)
On-demand, Reproducible Galaxy Instances in a Secure Environment for the Dutch Scientific Community
October 1, 2025 at 1:39 PM
galaxyproject.bsky.social
On Day 1 of European Galaxy Days, Marisa Loach presented The Single Cell and Spatial Omics Community.
Read more: https://galaxyproject.org/community/sig/singlecell/

@solenne-correard.bsky.social
##community ##EGD2025 ##spatial_omics ##galaxyproject ##single_cell ##eosc ##fair ##omics ##open_science
The Single Cell and Spatial Omics Community
October 1, 2025 at 11:12 AM
galaxyproject.bsky.social
On Day 2 of European Galaxy Days, Yvan Le Bras presented Two-Step Approach for Galaxy Tool Development Using Jupyter (“Interactive JupyterLab Notebook”).

##interactive ##EGD2025 ##jupyterlab ##tool_development ##galaxyproject ##jupyter_notebook ##eosc ##fair ##open_science
Two-Step Approach for Galaxy Tool Development Using Jupyter (“Interactive JupyterLab Notebook”)
October 2, 2025 at 9:39 AM
biapyx.bsky.social
This is a new step for accessible, FAIR bioimage AI 🚀

Try the tool 👉 imaging.usegalaxy.eu?tool_id=tool...

Contribute your models 🧑‍🔬 And join the community making bioimage analysis open & reproducible!

#BiaPy #GalaxyProject #BioImageAnalysis #Bioimaging
Galaxy
Galaxy is a community-driven web-based analysis platform for life science research.
imaging.usegalaxy.eu
October 20, 2025 at 2:11 PM
galaxyproject.bsky.social
https://galaxyproject.org/news/2025-03-10-inveniordm-integration-update/

@galaxyproject.bsky.social
##UseGalaxy ##GalaxyProject ##UniFreiburg ##EOSC ##EuroScienceGateway ##Galaxy ##InvenioRDM ##RDM ##ResearchDataManagement ##Zenodo ##OpenScience ##DataManagement ##FAIR ##Data ##ReproducibleResearch (2/2)
October 15, 2025 at 2:11 PM
galaxyproject.bsky.social
On Day 1 of European Galaxy Days, Hans-Rudolf Hotz and Mihail Anton presented Welcome, Logistics & General Galaxy and ELIXIR Update.
Read more: https://galaxyproject.org/events/2025-10-01-egd2025/#<a href="/hashtag/schedule" class="hover:underline text-blue-600 dark:text-sky-400 no-card-link">#schedule

@hhrhotz.bsky.social
##EGD2025 ##galaxyproject ##eosc ##fair ##elixir ##open_science
Welcome, Logistics & General Galaxy and ELIXIR Update
October 1, 2025 at 9:11 AM
galaxyproject.bsky.social
On Day 1 of European Galaxy Days, Paul Zierep presented Precision Diagnosis and Risk Stratification of Helicobacter pylori-Induced Gastritis Using Multi-Omics Machine Learning Signatures Or The Synergy Between Complex Research Projects and Galaxy.

##helicobacter ##EGD2025 ##galaxyproject (1/2)
Precision Diagnosis and Risk Stratification of Helicobacter pylori-Induced Gastritis Using Multi-Omics Machine Learning Signatures Or The Synergy Between Complex Research Projects and Galaxy
October 1, 2025 at 3:31 PM
jillwegrzyn.bsky.social
Last day of #PAG2019 #PAGXXVII ! 6 great talks & 7 posters! Congrats @Sumaira_Zaman_ @_livmaher @geneticatt @slmcevoy @nasimrahmatpour Alyssa & Emily, Sean @nicherndon @TreeGenes We’re recruiting a PhD student for Fall - spread the word! @AgBioData @galaxyproject @uconneeb
November 13, 2024 at 6:47 PM
galaxyproject.bsky.social
https://zenodo.org/records/16761933
https://zenodo.org/records/15920451

##heterogenuous_compute ##EGD2025 ##distributed_network ##eurosciencegateway ##galaxyproject ##eosc ##fair ##pulsar_network ##open_science (2/2)
D3.1 Operations documentation on the Open Infrastructure deployment
Development of the Open Infrastructure and Pulsar Network to support distributed job execution and scalable Galaxy deployments across Europe. Project: EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963. Document: D3.1 Operations documentation on the Open Infrastructure deployment Work Package: Work Package 3. Pulsar Network: Distributed heterogeneous compute. Task: Task 3.1 Develop and maintain an Open Infrastructure baseddeployment model for Pulsar endpoints. Task 3.3 Build a European-wide network of Pulsar sites. Task 3.5 Developing and maintaining national or domain-drivenGalaxy servers. Lead Beneficiary: INFN Contributing Beneficiary: INFN, ALU-FR, CNRS, CESNET, UiB, BSC, VIB, IISAS, TUBITAK and CNR Executive Summary Work Package 3 of the EuroScienceGateway project is divided into 5 tasks, aimed at bringing into production (TRL9) the Pulsar Network , a distributed computing network that allows public Galaxy servers to offload jobs to remote computing clusters provided by project partners. Specifically, this deliverable describes the work done in tasks 3.1, 3.2, 3.3 and 3.5. The main objectives of WP3 are: 1) to simplify the deployment and management of new Pulsar and Galaxy endpoints (T3.1 and T3.5), to make Pulsar compatible with the GA4GH TES specifications (T3.2), and to deploy new Pulsar endpoints (T3.3)
zenodo.org
October 3, 2025 at 6:53 PM
jillwegrzyn.bsky.social
CartograPlant’s workshop at #PAG30 is Friday! Learn about data integration (genotype, phenotype, & environment) for georeferenced #plants from @Irene_Cobo - This web-based interface features ANALYTICS for #popgen @gmodproject @galaxyproject #FAIR @AgBioData @AG2PI @USDA_NIFA
November 13, 2024 at 8:12 AM
galaxyproject.bsky.social
📝 New blog post Released!
https://galaxyproject.org/news/2025-03-26-gta-registration-open/

🌠 Join the GTA2025 and learn how to analyze your data using Galaxy

@galaxyproject.bsky.social
##UseGalaxy ##GalaxyProject ##UniFreiburg ##EOSC ##EuroScienceGateway
Galaxy Training Academy 2025 - Register now 🎉
🌠 Join the GTA2025 and learn how to analyze your data using Galaxy
galaxyproject.org
March 30, 2025 at 8:13 AM
galaxyproject.bsky.social
#GenomeAnalysis ##MicrobialGenomics ##OpenScience ##ReproducibleResearch ##GalaxyProject ##OpenSourceTools ##LifeSciences ##ResearchTools (2/2)
October 15, 2025 at 7:37 AM
galaxyproject.bsky.social
An environment that integrates Jupyter with Galaxy, allowing tools to be added as notebook cells, and providing access to thousands of bioinformatics tools from within a notebook interface.
http://galaxyproject.org/news/2025-04-11-galaxy-to-notebook-g2nb/

##UseGalaxy ##GalaxyProject ##EOSC (1/2)
Genomics to Notebook (g2nb): extending the computational notebook
An environment that integrates Jupyter with Galaxy, allowing tools to be added as notebook cells, and providing access to thousands of bioinformatics tools from within a notebook interface.
galaxyproject.org
October 16, 2025 at 11:25 AM