#EnvironmentalMicrobiome
In #EnvironmentalMicrobiome

🔍Identifying whether Daphnia hosts a "core microbiome" & which microbial taxa it comprises

🦠The D. magna microbiome is highly variable, with only a few consistent taxa, notably L. planktonicus under lab conditions

👉 doi.org/qh8w #OpenAccess
February 10, 2026 at 9:01 AM
In #EnvironmentalMicrobiome

🔍Investigating how cotton–mustard intercropping modulates the root microbiome and suppresses Verticillium wilt

🦠Highlighting the potential of microbiome‑based strategies for sustainable soilborne disease management

👉 doi.org/qpp6 #OpenAccess
February 3, 2026 at 9:08 AM
In #EnvironmentalMicrobiome

🔍Investigating the interaction between organic amendments & soil texture in agricultural soils used for arable production

🚨Highlighting the need for tailored management strategies to promote soil health

➡️ doi.org/qn2t

#OpenAccess #Microbiome #Soil #Agriculture
January 27, 2026 at 9:09 AM
In #EnvironmentalMicrobiome

📝Evaluating the level of consensus between different strategies for exploring marine viruses

🚨PacBio HiFi in combination with Illumina seem to perform the best in absolute recovery of viral species & genera

Read more 👉 doi.org/qm8s #OpenAccess
January 20, 2026 at 9:28 AM
In #EnvironmentalMicrobiome

🚨Fungi dominate eukaryotic microbial assemblages in hot spring biofilms of East and Southeast Asia

Read more 👉 doi.org/qmc2 #OpenAccess

#Fungi #Microbiology #Eukaryotes #HotSprings
January 13, 2026 at 9:05 AM
In #EnvironmentalMicrobiome

🔍Rapid and sustained differentiation of disease-suppressive phyllosphere microbiomes in tomato following experimental microbiome selection🍅

Read more 👉 doi.org/qjzv
January 6, 2026 at 9:04 AM
In #EnvironmentalMicrobiome

🌲Norway spruce needles contain biomineralized gold (Au) nanoparticles

🚨Au-nanoparticles are linked with endophytic bacteria, suggesting microbes may influence plant biomineralization

Read more 👉 doi.org/g95zgw
January 5, 2026 at 9:24 AM
In #EnvironmentalMicrobiome

🔍Peptide nucleic acid (PNA) clamps enhance root microbiome profiling in wheat and maize

🚨The most substantial increase in prokaryotic read abundance was observed at a PNA concentration of 1.0 µM

Read more 👉 doi.org/qjcg #OpenAccess
December 25, 2025 at 9:57 AM
In #EnvironmentalMicrobiome

🔍Examining the differences in silage quality between leguminous & gramineous plants

🚨Revealing the differences in terms of fermentation quality, bacterial diversity, functional profile & co-occurrence network

👉 doi.org/qjcf #OpenAccess
December 16, 2025 at 9:13 AM
In #EnvironmentalMicrobiome

🦠Using 16S rRNA and metagenomic sequencing technologies to examine the metabolic regimes of microbial communities during water regulation and non-regulation periods in river–lake systems

Read more 👉 doi.org/qf65 #OpenAccess
December 9, 2025 at 9:17 AM
In #EnvironmentalMicrobiome

🔍Conducting a seasonal investigation in mangrove sediments of the Futian Natural Reserve

📢Highlighting that salinity is a key environmental factor mediating methane emissions in mangroves

Read more👉 doi.org/qfj8 #OpenAccess
December 2, 2025 at 9:24 AM
In #EnvironmentalMicrobiome

🦠Could air pressure be a key driver of plant-specific microbial response in the rhizosphere?

🚨Highlighting a critical yet often overlooked driver of plant–microbe dynamics during uphill range shifts

Read more👉 doi.org/qd8q #OpenAccess
November 25, 2025 at 9:40 AM
In #EnvironmentalMicrobiome

🔍Profiling microbiome composition across the #rhizospheric, #phyllospheric & #soil compartments of A. sinicus

🦠Highlighting the intricate interactions between plants, #microbes & their environment

Read more👉 doi.org/qdf4 #OpenAccess
November 18, 2025 at 11:27 AM
In #EnvironmentalMicrobiome

🔍Exploring the #taxonomy & #metabolism of the phylum Candidatus Cloacimonadota

🚨Clade A & Clade B showed distinct #genomic features, metabolic strategies and #evolutionary histories associated with their environment

👉 doi.org/qcsw #OpenAccess
November 11, 2025 at 1:43 PM
#EnvironmentalMicrobiome

🔍Investigating the stability of #Spirochaetota symbionts in the octocoral Corallium rubrum under heat stress

📣Even under thermal stress, these bacterial symbionts persist, mirroring their constant presence in octocoral tissues

Read more👉 doi.org/p9g9 #OpenAccess
November 4, 2025 at 9:15 AM
In #EnvironmentalMicrobiome

🔍Investigating the viral communities of diverse #AquaticPlants

🚨Identifying a novel #Potyvirus that appears to be globally present in multiple ornamental plants from the genus Sagittaria

Read more👉 doi.org/qbdn #OpenAccess
October 28, 2025 at 9:24 AM
In #EnvironmentalMicrobiome

🔍Investigating the functional changes in the microbiome of red coral C. rubrum under thermal stress🪸

🌡️Spirochaetota may play a critical role in coral thermotolerance across temperatures ranging from 12-24°C

Read more👉 doi.org/p9g9 #OpenAccess
October 21, 2025 at 8:03 AM
In #EnvironmentalMicrobiome

🚨Introducing a 3D sampling approach to examine spatial dynamics of microbial populations

🦠Offering a framework to examine microbial spatial heterogeneity, pathogen ecology & niche differentiation in natural environments

Read more👉 doi.org/p8nf
October 14, 2025 at 8:05 AM
In #EnvironmentalMicrobiome

🔍Exploring fungi species composition transition during a 40-year urbanization in a subtropical city of China

📣Soil fungi in urban areas had significantly lower Chao1 & phylogenetic diversity than that of a natural ecosystem

👉 doi.org/p75d
October 7, 2025 at 8:24 AM
In #EnvironmentalMicrobiome:

🔍Using metatranscriptomics to examine the seasonal dynamics of B1 acquisition strategies in Baltic Sea bacterioplankton

📣Observing elevated B1-related gene expression in summer, coinciding with increased temperatures & bacterial activity

Read more▶️ doi.org/p7cx
Pronounced seasonal dynamics in transcription of vitamin B1 acquisition strategies diverge among Baltic Sea bacterioplankton - Environmental Microbiome
Background Vitamin B1 (thiamin) is essential to life; yet little is known of the regulation of its availability in marine environments or how it varies seasonally. Since microbes are the key synthesizers of the vitamin in marine environments, we here used metatranscriptomics to examine the seasonal dynamics of B1 acquisition strategies (including both uptake and synthesis pathways) in Baltic Sea bacterioplankton. Results Elevated B1-related gene expression was observed in summer, coinciding with increased temperatures and bacterial activity and decreased nutrient availability. Different bacterial taxa exhibited distinct B1 acquisition strategies. We identified filamentous Cyanobacteria of the order Nostocales as critical to sustaining B1 production during summer, potentially compensating for limited synthesis in heterotrophic bacteria, especially for 4-amino-5-hydroxymethylpyrimidine (HMP) synthesis. Also, Pelagibacterales accounted for major portions of the community transcription, primarily taking up and salvaging the B1 precursor HMP during summer. This study highlights the partitioning of B1 synthesis, salvage, and uptake among microbial taxa, underscoring that transcriptional activity was more dynamic over time than changes in the genomic potential. Conclusions We emphasize the influence of environmental conditions on microbial community dynamics and B1 cycling in general, and the potential implications of global change-induced increases in filamentous Cyanobacteria blooms on vitamin food web transfer in particular.
doi.org
September 30, 2025 at 8:13 AM
In #EnvironmentalMicrobiome

🔍Characterising plastisphere communities associated with a wastewater treatment plant in New Zealand

📢No substrate-specific microbial communities were found among glass & polymer types regardless of artificial aging

👉http://doi.org/pvb5
#plastics
July 11, 2025 at 9:32 AM
🚨📄 Preprint Alert! Excited to share our latest findings on how native microorganisms help degrade petroleum pollutants in the Baltic Sea!

#BalticSea #EnvironmentalMicrobiome #MicrobialEcology #HydrocarbonDegradation
Microbial hydrocarbon degradation potential of the Baltic Sea ecosystem
The Baltic Sea receives petroleum hydrocarbons from various point sources. The degradation of these contaminants in the environment is typically facilitated by a variety of microorganisms that possess...
www.biorxiv.org
June 4, 2025 at 3:47 PM
Today Aileen’s last PhD thesis paper came out in #environmentalmicrobiome @microbiomej.bsky.social
Working with permafrost can be a challenge, but we managed to get some insights into the biosynthetic capabilities of permafrost microbiomes.

environmentalmicrobiome.biomedcentral.com/articles/10....
Exploring the biosynthesis potential of permafrost microbiomes - Environmental Microbiome
Background Permafrost microbiomes are of paramount importance for the biogeochemistry of high latitude soils and while endemic biosynthetic domain sequences involved in secondary metabolism have been ...
environmentalmicrobiome.biomedcentral.com
November 22, 2024 at 5:04 PM