Microbiome
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microbiomej.bsky.social
Microbiome
@microbiomej.bsky.social
A family of open access journals from BioMed Central (BMC) that seek to unite investigators conducting microbiome research in environmental, agricultural, and biomedical arenas🦠
In #EnvironmentalMicrobiome

🔍Exploring the #taxonomy & #metabolism of the phylum Candidatus Cloacimonadota

🚨Clade A & Clade B showed distinct #genomic features, metabolic strategies and #evolutionary histories associated with their environment

👉 doi.org/qcsw #OpenAccess
November 11, 2025 at 1:43 PM
In #Microbiome

🚨Introducing Metero2, a tool that leverages compact, environment-specific microbial gene catalogues to deliver comprehensive TFSP insights from metagenomic samples

👉Find out more: doi.org/qcsz
November 10, 2025 at 9:51 AM
In #Microbiome

🔍Exploring the specific #microbial & host features that influence microbial succession at #weaning

🦠Highlighting the importance of host-derived glycans in shaping microbial communities during the weaning transition

Read more👉 doi.org/qbzh #OpenAccess
November 5, 2025 at 9:19 AM
#EnvironmentalMicrobiome

🔍Investigating the stability of #Spirochaetota symbionts in the octocoral Corallium rubrum under heat stress

📣Even under thermal stress, these bacterial symbionts persist, mirroring their constant presence in octocoral tissues

Read more👉 doi.org/p9g9 #OpenAccess
November 4, 2025 at 9:15 AM
In #Microbiome

🔍Exploring distinct #microbial communities associated with the ovaries & testes of a hermaphroditic eel

🚨The gonad microbial communities shared > 55% of their diversity with those in the gut & blood

Read more👉 doi.org/qbzg #OpenAccess
November 3, 2025 at 9:05 AM
In #AnimalMicrobiome

🔍A longitudinal cohort study exploring the gut #microbiota of #LabradorRetriever puppies

🚨Identifying associations with demographic, environmental & health-related factors

Read more➡️ doi.org/qbdm #OpenAccess
October 30, 2025 at 9:02 AM
In #Microbiome

🔍Developing strategies to modify donor microbiota to promote gastrointestinal development & maturation in germ-free mice

🚨Li05-modulated fecal microbiota significantly promoted epithelial development

👉 doi.org/qbdp #OpenAccess
October 29, 2025 at 9:20 AM
In #EnvironmentalMicrobiome

🔍Investigating the viral communities of diverse #AquaticPlants

🚨Identifying a novel #Potyvirus that appears to be globally present in multiple ornamental plants from the genus Sagittaria

Read more👉 doi.org/qbdn #OpenAccess
October 28, 2025 at 9:24 AM
In #Microbiome

🚨Introducing concept of the #OneHealth Microbiome, discussing strain-sharing across & within domains🦠

📢Highlighting its impact on the spread of #AMR genes & overall microbiome diversity & resilience to #ClimateChange

Read more👉 doi.org/qbc9 #OpenAccess
October 27, 2025 at 9:29 AM
In #AnimalMicrobiome

🔍Exploring how seasonality, diet & phyllosphere-associated microorganisms affect red panda #gutmicrobiota

🚨Bamboo's crude protein & phosphorus content are pivotal in shaping the #phyllosphere & gut microbial communities

👉 doi.org/p863 #OpenAcess
October 23, 2025 at 9:16 AM
In #Microbiome

🔍Distinguishing diet- and microbe-derived metabolites in the human gut

🚨Seven days after antibiotics, 98% of gut metabolites recovered to pre-antibiotic levels in the omnivore group

Read more👉 doi.org/p9g2 #OpenAccess
October 22, 2025 at 10:15 AM
In #EnvironmentalMicrobiome

🔍Investigating the functional changes in the microbiome of red coral C. rubrum under thermal stress🪸

🌡️Spirochaetota may play a critical role in coral thermotolerance across temperatures ranging from 12-24°C

Read more👉 doi.org/p9g9 #OpenAccess
October 21, 2025 at 8:03 AM
In #Microbiome

🚨Can Baltic Sea microbes naturally break down petroleum pollution?

🔍Using metagenomics, this research profiles the native microorganisms associated with hydrocarbon degradation in the Baltic Sea

Read more➡️ doi.org/p9d7 #OpenAccess
October 20, 2025 at 8:21 AM
In #AnimalMicrobiome

🚨Developing a new in vitro model of the healthy adult pig colon integrating both luminal & mucosal microenvironments

🦠Enabling early testing of innovative feed strategies to understand their effects on gut microbiota

Read more👉 doi.org/p8nd #OpenAccess
October 16, 2025 at 8:19 AM
In #Microbiome

🔍Exploring environmental influences on gill-associated microbiomes in the southern king crab holobiont🦀

💡Highlighting the significance of gill-associated microbiome plasticity in adapting to changing habitats

👉 doi.org/p8nc #OpenAcess
October 15, 2025 at 8:21 AM
In #EnvironmentalMicrobiome

🚨Introducing a 3D sampling approach to examine spatial dynamics of microbial populations

🦠Offering a framework to examine microbial spatial heterogeneity, pathogen ecology & niche differentiation in natural environments

Read more👉 doi.org/p8nf
October 14, 2025 at 8:05 AM
In #Microbiome

🔍Comparing gut microbiomes of individuals with Parkinson's disease (PD), prodromal PD & healthy controls🦠

💡Highlighting the apparent disruption of microbial gene expression in PD, particularly in genes associated to mobility

Read more👉 doi.org/p8nb
October 13, 2025 at 8:21 AM
Reposted by Microbiome
New insights into the evolution and metabolism of the bacterial phylum Candidatus Acidulodesulfobacteriota through metagenomics
#microbiology #bacteria
@microbiomej.bsky.social
environmentalmicrobiome.biomedcentral.com/articles/10....
New insights into the evolution and metabolism of the bacterial phylum Candidatus Acidulodesulfobacteriota through metagenomics - Environmental Microbiome
Candidatus Acidulodesulfobacterales, a formerly proposed bacterial order within the Deltaproteobacteria lineage, represents an ecologically significant group in sulfur-rich environments. Their diversity and functional potential in artificial acid mine drainage (AMD) ecosystems have been well studied; however, their distribution and ecological role in marine hydrothermal sulfides remain poorly understood. Here we integrated publicly available metagenome-assembled genomes (MAGs) with a newly reconstructed MAG from hydrothermal sulfides to perform comprehensive phylogenetic, metabolic, and host-virus interaction analyses. Phylogenomic and 16S rRNA gene analyses indicated that this lineage represents a distinct phylum-level clade, leading us to propose the designation Ca. Acidulodesulfobacteriota. Metabolic reconstructions indicated a versatile lifestyle, encompassing pathways for carbon fixation, nitrogen fixation, sulfur metabolism, iron oxidation, and hydrogen oxidation. Notably, the concatenated DsrAB protein phylogeny and the mixed enzyme types involved in Dsr-dependent dissimilatory sulfur metabolism suggest that Ca. Acidulodesulfobacteriota may represent a transitional lineage in the evolutionary shift from reductive to oxidative Dsr metabolism. Viral auxiliary metabolic genes (AMGs) associated with this phylum were predicted to modulate host metabolic pathways, including folate biosynthesis and sulfur metabolism, highlighting intricate host-virus interactions. These findings advance our understanding of the evolution, metabolic potential, and ecological roles of Ca. Acidulodesulfobacteriota in biogeochemical cycling.
environmentalmicrobiome.biomedcentral.com
October 12, 2025 at 8:17 AM
Reposted by Microbiome
BugBitten's latest blog from @scianouk.bsky.social looking at the recent findings on insect sentience - what implications will this have on vector control? go.nature.com/47jeJ1S
What do recent findings on insect sentience and welfare mean for vector research and control?
In the field of public health, we conduct a variety of experiments and studies on insects, such as mosquitoes, to advance vector-borne disease research. However entomologists’ variable knowledge and a...
go.nature.com
October 10, 2025 at 4:41 PM
In #AnimalMicrobiome

🔍Exploring unintended consequences of antibiotic use in beekeeping🐝

🚨Larval OTC exposure delays drone development, reduces survival & results in detectable residues in the gut & reproductive tissues of newly emerged adults

Read more👉 doi.org/p75f
October 9, 2025 at 8:04 AM
In #Microbiome

🔍Evaluating urine volume & host depletion methods to enable genome-resolved metagenomics of the urobiome

🚨Revealing evidence of urea & environment chemical (long-chain alkane) degradation genes in urine microbes

👉 doi.org/p75c
October 8, 2025 at 8:42 AM
Reposted by Microbiome
Global Change, Pest Invasions, and Migration: Challenges for Rural Communities.

📅 Friday, October 17th, 2025
⏰ 13:00 PM CET | 14:00 PM GMT+1 | 09:00 AM EST
Register here: cassyni.com/events/PuudG...

The event will feature presentations by Antonio Biondi and Dr Samira Abuelgasim Mohamed
October 7, 2025 at 11:29 AM
In #EnvironmentalMicrobiome

🔍Exploring fungi species composition transition during a 40-year urbanization in a subtropical city of China

📣Soil fungi in urban areas had significantly lower Chao1 & phylogenetic diversity than that of a natural ecosystem

👉 doi.org/p75d
October 7, 2025 at 8:24 AM