Xian Chang
xian-chang.bsky.social
Xian Chang
@xian-chang.bsky.social
Bioinformatics postdoc at INRAE in Toulouse, France.
Working on data structures and algorithms for pangenome graphs
October 2, 2025 at 6:40 AM
Big thanks to everyone involved in the paper! @benedictpaten.bsky.social @adamnovak.graphs.vg Jordan Eizenga @jltsiren.bsky.social @jmonlong.bsky.social @shlokanegi.bsky.social Francesco
Andreace @sagorika03.bsky.social @kokyriakidis.bsky.social Glenn Hickey, Stephen Hwang, Emmanuele Delot
October 2, 2025 at 6:40 AM
My favorite part: co-linear chaining in cyclic graphs using zip code trees, a new data structure for quickly finding distances in the graph that best match corresponding distances in the read
October 2, 2025 at 6:40 AM
Also featuring a cool demo of pangenome-guided regional assembly of complex loci from @shlokanegi.bsky.social Francesco Andreace @sagorika03.bsky.social @kokyriakidis.bsky.social
October 2, 2025 at 6:31 AM
Thanks so much!
March 22, 2025 at 7:07 AM
Huge thank you to my incredible advisor @benedictpaten.bsky.social at @ucscgenomics.bsky.social for all his support and guidance, and to my committee David Haussler, @russcd.bsky.social, and @jianma.bsky.social
March 21, 2025 at 11:02 PM