Vasily Zaburdaev
vasilyzaburdaev.bsky.social
Vasily Zaburdaev
@vasilyzaburdaev.bsky.social
Physicist. Prof. FAU Erlangen-Nürnberg, Max-Planck-Zentrum für Physik und Medizin.
https://mpzpm.mpg.de/research/vasily-zaburdaev
Reposted by Vasily Zaburdaev
With deep sadness, we share that Prof. Jochen Guck, Director at the Max Planck Institute for the Science of Light passed away on October 3. His visionary work bridged physics and medicine. We have lost a brilliant scientist and dear friend.

mpl.mpg.de/news/article...
@fau.de

📸 Stephan Spangenberg
October 8, 2025 at 1:26 PM
Reposted by Vasily Zaburdaev
Awesome work by the @simonereber.bsky.social, @vasilyzaburdaev.bsky.social & Guck labs (published in @natcomms.nature.com). They show that the nucleus is less dense than the cytoplasm and that the density ratio is conserved across many eukaryotes. www.nature.com/articles/s41...
Conserved nucleocytoplasmic density homeostasis drives cellular organization across eukaryotes - Nature Communications
Cells can regulate their mass density. Here, the authors demonstrate how eukaryotes establish and maintain a lower density in the nucleus than in the cytoplasm via pressure balance, and how deviations emerge during pathophysiological states like senescence.
www.nature.com
September 28, 2025 at 3:03 PM
Reposted by Vasily Zaburdaev
Researchers from #MPZPM and @mpiib-berlin.mpg.de have now compared the ratio of nuclear and cytoplasmic density in different organisms and come to a surprising conclusion: the cell nucleus in eukaryotes is less dense than the rest of the cell.

👉 mpzpm.mpg.de/news/news-de...

#Physics #Medicine
September 25, 2025 at 12:59 PM
Indeed, fantastic job Dr. Tim Klingberg! Big thanks to @lennarthilbert.bsky.social for coming over to Erlangen @fau.de for the defense and for all continued years of collaboration that led to this!
What a great doctoral defense by Tim Klingberg @fau.de

Based in the group of our collaborator @vasilyzaburdaev.bsky.social Tim decisively contributed to at least 3 of our own lab’s foundational projects, which he showed today at “Max Planck Zentrum Physik und Medizin”

Some impressions
September 23, 2025 at 9:28 PM
Reposted by Vasily Zaburdaev
What a great doctoral defense by Tim Klingberg @fau.de

Based in the group of our collaborator @vasilyzaburdaev.bsky.social Tim decisively contributed to at least 3 of our own lab’s foundational projects, which he showed today at “Max Planck Zentrum Physik und Medizin”

Some impressions
September 23, 2025 at 9:18 PM
Amazing to see this out, and surely this is only the beginning of many related phenomena to be understood and decipher the roles of density distribution inside cells! Congratulations to all involved!
August 15, 2025 at 12:22 PM
Reposted by Vasily Zaburdaev
🍹Kletter et al. show that cell state-specific cytoplasmic density controls spindle architecture and scaling in neural differentiation, suggesting that the physical properties of the cytoplasm are a determinant in #organelle size control.
bit.ly/4mhMvsU
Cell state-specific cytoplasmic density controls spindle architecture and scaling - Nature Cell Biology
Kletter et al. show that cell state-specific cytoplasmic density controls spindle architecture and scaling in neural differentiation, suggesting that the physical properties of the cytoplasm are a det...
bit.ly
August 2, 2025 at 6:54 PM
Reposted by Vasily Zaburdaev
✨Thanks to amazing students @tobiaskletter.bsky.social, postdocs @biswashere.bsky.social & collaborators @vasilyzaburdaev.bsky.social‬ & ALMF @embl.org

👉Cytoplasmic material properties control spindle architecture and scaling 👉 out today @natcellbio.nature.com rdcu.be/eqPr8
Cell state-specific cytoplasmic density controls spindle architecture and scaling
Nature Cell Biology - Kletter et al. show that cell state-specific cytoplasmic density controls spindle architecture and scaling in neural differentiation, suggesting that the physical properties...
rdcu.be
June 13, 2025 at 10:58 AM
Reposted by Vasily Zaburdaev
🚨🚨🚨 #PhD position available in @simonereber.bsky.social lab at @mpiib-berlin.mpg.de! World-class training to be had on #microtubule #cytoskeleton biology using #Xenopus & #microscopy readouts. 👇
✨We are looking for a PhD student interested in physical cell bio, imaging 🔬, biochemistry, #Xenopus 🐸 & #microtubules

Join us @mpiib-berlin.mpg.de!
May 20, 2025 at 5:25 AM
Reposted by Vasily Zaburdaev
Hierarchical Heterogeneities in Spatio-Temporal Dynamics of the Cytoplasm
Understanding of the dynamics inherent to biological matter is crucial for illuminating the physical mechanisms underlying cellular processes. In this study, we employ bright-field differential dynamic microscopy (DDM) to investigate density fluctuations inherent in a cell-free model of eukaryotic cytoplasm. Our measurements reveal subdiffusive fractional Brownian motion and non-Gaussian displacement distributions, highlighting cytoplasmic heterogeneity. We introduce an empirical model that combines fractional Brownian motion with an inverse Gaussian distribution of diffusivities to describe the observed non-Gaussianity. Validated through Monte Carlo simulations, this model allows us to estimate the fractional diffusivity and exponent effectively. By altering macromolecular composition, the addition of energy, and assembly of a cytoskeleton, we identify three independent mechanisms that result in similar fractional exponents yet distinct diffusivities. We find that energy addition leads to non-stationary dynamics, in contrast to the stationary behavior observed under passive conditions. Presence of microtubules introduces a secondary dynamical timescale, which we describe using a two-state fractional Brownian motion model to differentiate between cytosolic and microtubule network associated contributions. Our findings demonstrate the effectiveness of DDM as a label-free tool for quantifying viscoelastic and heterogeneous properties of the cytoplasm and provide insights into how physical and biochemical factors, including cytoskeletal organization, govern subcellular dynamics. ### Competing Interest Statement The authors have declared no competing interest.
www.biorxiv.org
May 12, 2025 at 9:34 AM
Reposted by Vasily Zaburdaev
Beautiful work by @mctwo.bsky.social investigating the spatio-temporal dynamics of the cytoplasm using label-free tools and 🐸 extracts!

🐸 + 🔬 + 📈 = ✨

w. @gucklab.bsky.social , @simonereber.bsky.social , @vasilyzaburdaev.bsky.social

www.biorxiv.org/content/10.1...
www.biorxiv.org
May 10, 2025 at 9:41 AM
Reposted by Vasily Zaburdaev
Happy International #WomenInScienceDay!
Happy International #WomenInScienceDay! To all young women & girls dreaming of a career in science - this is for you! 🤗 Keep going - your curiosity, determination, and brilliance will shape the future! ✨ 🔬 #IDWGS2025 #GirlsInSTEM
February 11, 2025 at 5:24 PM
Reposted by Vasily Zaburdaev
🚨🚨 MEGA JOB ALERT 🚨🚨
Independent Group Leader Positions in Computational Biology @humantechnopole.bsky.social!

Are you ready to start your own lab? Do you know someone who is? Repost this + share with everyone who might want to know about it. Thanks!!! 🙏

More details below... check it out! 🧵 1/3
January 29, 2025 at 10:40 AM
Nice occasion for 1st post! Our contribution with Liraz Chai (not yet on 💙sky) to the review on modern methods to study #biofilms headed by Susann Müller (same) and members of #SPP2389 @emmanuel-saliba.bsky.social @knutdrescher.bsky.social @cyanolab.bsky.social
journals.asm.org/doi/10.1128/...
Resolving spatiotemporal dynamics in bacterial multicellular populations: approaches and challenges | Microbiology and Molecular Biology Reviews
SUMMARYThe development of multicellularity represents a key evolutionary transition that is crucial for the emergence of complex life forms. Although multicellularity has traditionally been studied in...
journals.asm.org
January 26, 2025 at 6:54 PM