Tsung-Ta Yu
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tsung-ta.bsky.social
Tsung-Ta Yu
@tsung-ta.bsky.social
PhD student in LundbergLand (@derekseveri.bsky.social)
Studying the functional role of plasmids in Sphingomonas
Reposted by Tsung-Ta Yu
🚀 Excited to share SMART-PTA (miniaturized Primary Template Amplification) a high-throughput single-cell whole-genome amplification method that preserves clonal lineage information while enabling deep genomic and transcriptomic profiling.
Shout out to Tamara Prieto, Dennis Yuan, John Zinno and @ivanraimondi.bsky.social . Thank you to our funders at @themarkfdn.bsky.social
October 14, 2025 at 2:42 PM
Reposted by Tsung-Ta Yu
www.sciencedirect.com/science/arti...

How much environmental chaos to embrace in plant-microbe research, and to what end? A commentary on setting (with all choices OK as long as all options considered) w/ bergelsonlab.org, @fabriceroux7.bsky.social,
@plantevolution.bsky.social, tkarasovlab.org
authors.elsevier.com
August 13, 2025 at 8:14 PM
Reposted by Tsung-Ta Yu
New Review Out!
We explore how droplet microfluidics is opening new doors in microbial ecology - enabling single-cell functional insights into growth, metabolism & interactions.
🔗 doi.org/10.1093/fems...
#MicrobialEcology #DropletMicrofluidics #Microbiology
Droplet microfluidics for single-cell studies: a frontier in ecological understanding of microbiomes
Abstract. Recent advances in single-cell technologies have profoundly impacted our understanding of microbial communities—shedding light on cell-to-cell va
doi.org
July 24, 2025 at 12:15 PM
Reposted by Tsung-Ta Yu
📣 Happy to see the journal publication 📄 of our work on Starships 🚀 in Verticillium fungi: terrific work led by @yukiyosato.bsky.social
rdcu.be/exBSp
Starship giant transposons dominate plastic genomic regions in a fungal plant pathogen and drive virulence evolution
Nature Communications - Giant transposons, known as ‘Starships’, mediate horizontal gene transfer between fungal genomes. Here, Sato et al. show that Starships occupy genome regions...
rdcu.be
July 24, 2025 at 10:40 AM
Reposted by Tsung-Ta Yu
Curious about plasmid biology? Our latest paper is out now in Nature Communications! 🚨

doi.org/10.1038/s414...

We analyzed thousands of diverse bacterial plasmids to shed light for the first time on a key aspect of plasmid biology: plasmid copy number. 1/7 👇
Universal rules govern plasmid copy number - Nature Communications
Plasmids exhibit a broad range of sizes and copies per cell, and these two parameters appear to be negatively correlated. Here, Ramiro-Martínez et al. analyse the copy number of thousands of diverse b...
doi.org
July 2, 2025 at 10:07 AM
Thanks to everyone who came by my poster today for discussion! #2025ISMPMI

If you weren’t able to make it but still interested in the potential role native plasmids play within Sphingomonas-plant interactions. Can check it out now on Zenodo zenodo.org/records/1591...
Small DNA, Big Impact? Exploring the role of plasmids in Sphingomonas – plant interactions
This poster was presented at the 2025 IS-MPMI, Cologne Submitted Abstract Plasmids provide traits that can enable bacteria to adapt to unique and changing environments. Sphingomonas, an often-benefici...
zenodo.org
July 15, 2025 at 1:07 PM
Reposted by Tsung-Ta Yu
This work started nearly 10 years ago and was once my main postdoctoral project at @plantevolution.bsky.social before I slowed work on it to a trickle because it became confusing. But it always remained extremely interesting.

journals.plos.org/plosbiology/...
A major trade-off between growth and defense in Arabidopsis thaliana can vanish in field conditions
In controlled greenhouse conditions, Arabidopsis thaliana plants with a hyperactive allele of the ACD6 gene have stronger pathogen defenses but are smaller and make fewer seeds, in a classic fitness t...
journals.plos.org
July 15, 2025 at 10:10 AM
Reposted by Tsung-Ta Yu
Last week, I had a great time at the New Phytologist EiC Symposium: “Microbes as hidden or prominent players in plant life” in Tartu, Estonia!

Honored and very happy to receive the Best Poster Award! ✨
Big thanks to the organizers and all the inspiring scientists I met! 🌱 @newphyt.bsky.social
July 13, 2025 at 9:26 PM