Tareq Hameduh
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tareq146.bsky.social
Tareq Hameduh
@tareq146.bsky.social
* I am into protein science
, data science and philosophy of science.
* Post-doc (Structural Bioinformatics) / Mendel University, Brno - Czech Republic.
* Research interest: Proteins side chains and Rotamers.
Anyhow, thanks for your efforts.
March 24, 2025 at 2:14 PM
That would be awesome.
March 24, 2025 at 2:14 PM
However, do you think it would be better to do 5000 sample compared to 1000 sample?

And what do you think would be faster to run it on a local machine with RTX 4090 or keep on the colab with the A100?
March 21, 2025 at 10:02 PM
Fourth, facilitating the exploration of potential conformations before deciding which to simulate further so instead of simulations that takes weeks you will do the modelling of Bioemu than decide what to do next,

Fifth, it can compare the wild versus mutant sequence configurations
March 21, 2025 at 9:59 PM
Second it can help you to scan the preferred conformation spaces of protein sequence to show you if there is a preferred configuration or multiple configurations,

Third it can shows the most unstable part of protein so you can investigate there if needed,
March 21, 2025 at 9:58 PM
Hello Pablo,

First I need to thank and your team for this cool technology

And I like to summarise the uses I can see

it’s a great tool to check the stability of your structure (protein or peptide) as a first point,
March 21, 2025 at 9:57 PM
where we prepose a "proteomic code" derived from DNA's genetic code, suggesting that specific amino acid pairings determine protein folding (intra-connections) and protein-protein interactions (inter-connections) based on DNA and biophysics.
March 19, 2025 at 3:59 PM