Lingyan Shi
@stimulatedraman.bsky.social
Lingyan Shi is currently an Associate Professor in the Shu Chien Gene Lay Department of Bioengineering at UCSD. My Lab develop and apply multimodal nanoscopy for studying metabolic changes in aging and diseases.
Reposted by Lingyan Shi
🚀 Calling all early-career researchers in single-cell genomics and spatial biology!
Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML
🗓 May 9–10, 2026 | Les Diablerets, Switzerland
Submit here: www.grc.org/single-cell-...
#SpatialOmics #AIML #GRS
Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML
🗓 May 9–10, 2026 | Les Diablerets, Switzerland
Submit here: www.grc.org/single-cell-...
#SpatialOmics #AIML #GRS
October 26, 2025 at 1:51 PM
🚀 Calling all early-career researchers in single-cell genomics and spatial biology!
Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML
🗓 May 9–10, 2026 | Les Diablerets, Switzerland
Submit here: www.grc.org/single-cell-...
#SpatialOmics #AIML #GRS
Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML
🗓 May 9–10, 2026 | Les Diablerets, Switzerland
Submit here: www.grc.org/single-cell-...
#SpatialOmics #AIML #GRS
Reposted by Lingyan Shi
Big thanks also to all the collaborators at UCSD and USC: Longwei + Peter Wang, @faldalf.bsky.social + Scott Fraser, Zack, Hiro+ Joh Schöneberg, Yajuan + Lingyan Shi, and Theresa + Jerrold Olefsky.
Also grateful to @anne-lyons-bioe.bsky.social for all the help with super-res image analysis!
Also grateful to @anne-lyons-bioe.bsky.social for all the help with super-res image analysis!
April 21, 2025 at 9:28 AM
Big thanks also to all the collaborators at UCSD and USC: Longwei + Peter Wang, @faldalf.bsky.social + Scott Fraser, Zack, Hiro+ Joh Schöneberg, Yajuan + Lingyan Shi, and Theresa + Jerrold Olefsky.
Also grateful to @anne-lyons-bioe.bsky.social for all the help with super-res image analysis!
Also grateful to @anne-lyons-bioe.bsky.social for all the help with super-res image analysis!
Reposted by Lingyan Shi
This work was done by an amazing team of PhD students, undergraduate students, postdoctoral fellows, and wonderful colleagues at Hopkins, Yale (Rong Fan, Xiaoyu Qin, and Mei Zhong), UCSD (Lingyan Shi and Yajuan Li), the Max Planck Institute (David Zwicker), and U. Florida (Mark Atkinson and team).
We have developed a new workflow to map whole human organs at single-cell resolution, while integrating spatial transcriptomics, proteomics, and metabolomics.
We applied this workflow to map precancerous lesions of the fallopian tubes.
More here: www.biorxiv.org/content/10.1...
We applied this workflow to map precancerous lesions of the fallopian tubes.
More here: www.biorxiv.org/content/10.1...
September 22, 2025 at 1:37 PM
This work was done by an amazing team of PhD students, undergraduate students, postdoctoral fellows, and wonderful colleagues at Hopkins, Yale (Rong Fan, Xiaoyu Qin, and Mei Zhong), UCSD (Lingyan Shi and Yajuan Li), the Max Planck Institute (David Zwicker), and U. Florida (Mark Atkinson and team).
Reposted by Lingyan Shi
Multimodal SRS imaging reveals metabolic remodeling in ovarian precancerous lesions.
In collaboration with Prof. Lingyan Shi (UCSD), we integrated spatial metabolomics into a new 3D tissue mapping workflow at single-cell resolution
More here: www.biorxiv.org/content/10.1...
In collaboration with Prof. Lingyan Shi (UCSD), we integrated spatial metabolomics into a new 3D tissue mapping workflow at single-cell resolution
More here: www.biorxiv.org/content/10.1...
September 28, 2025 at 3:31 PM
Multimodal SRS imaging reveals metabolic remodeling in ovarian precancerous lesions.
In collaboration with Prof. Lingyan Shi (UCSD), we integrated spatial metabolomics into a new 3D tissue mapping workflow at single-cell resolution
More here: www.biorxiv.org/content/10.1...
In collaboration with Prof. Lingyan Shi (UCSD), we integrated spatial metabolomics into a new 3D tissue mapping workflow at single-cell resolution
More here: www.biorxiv.org/content/10.1...
Reposted by Lingyan Shi
Up for a treat! @stimulatedraman.bsky.social presenting.
October 7, 2025 at 5:25 PM
Up for a treat! @stimulatedraman.bsky.social presenting.
Reposted by Lingyan Shi
Congratulations Professor Shi (@stimulatedraman.bsky.social) for your outstanding work imaging diseased tissue. Your contributions will no doubt lead to life-saving cures. Our gratitude to you!
today.ucsd.edu/story/a-clea...
today.ucsd.edu/story/a-clea...
A Clearer Look at Diabetic Kidney Disease via New Optical Imaging Technology
Researchers have developed a powerful new way to look inside kidney tissues, without needing to stain or damage the tissue samples. The new technique reveals early signs of disease often missed by tra...
today.ucsd.edu
June 2, 2025 at 2:58 PM
Congratulations Professor Shi (@stimulatedraman.bsky.social) for your outstanding work imaging diseased tissue. Your contributions will no doubt lead to life-saving cures. Our gratitude to you!
today.ucsd.edu/story/a-clea...
today.ucsd.edu/story/a-clea...
Reposted by Lingyan Shi
Congratulations to two UC San Diego faculty, Massimiliano Di Ventra, a theoretical physicist, and Lingyan Shi, an expert in imaging and spectroscopy, who were elected to the National Academy of Inventors! 👏🔱 bit.ly/41BD5kJ
March 3, 2025 at 11:19 PM
Congratulations to two UC San Diego faculty, Massimiliano Di Ventra, a theoretical physicist, and Lingyan Shi, an expert in imaging and spectroscopy, who were elected to the National Academy of Inventors! 👏🔱 bit.ly/41BD5kJ
Reposted by Lingyan Shi
Our Fall 2024 Impact Report just dropped from the UCSD Jacobs Chien-Lay Department of #Bioengineering!
Check out amazing updates from students, faculty, and staff! #TritonPride 🔱
heyzine.com/flip-book/1c...
Check out amazing updates from students, faculty, and staff! #TritonPride 🔱
heyzine.com/flip-book/1c...
UC San Diego Department of Bioengineering Impact Report - Fall 2024 | PDF to Flipbook
UC San Diego Shu Chien - Gene Lay Department of Bioengineering, Jacobs School of Engineering impact report.. PDF to flipbook converted using heyzine.com
heyzine.com
November 13, 2024 at 7:44 PM
Our Fall 2024 Impact Report just dropped from the UCSD Jacobs Chien-Lay Department of #Bioengineering!
Check out amazing updates from students, faculty, and staff! #TritonPride 🔱
heyzine.com/flip-book/1c...
Check out amazing updates from students, faculty, and staff! #TritonPride 🔱
heyzine.com/flip-book/1c...
Reposted by Lingyan Shi
My first post here on our research 🥳. Two preprints from my lab at Yale and Dr. Lingyan Shi’s lab at UCSD report same tissue section multi-modal spatial omics mapping! Please check them out. 🤩
November 12, 2024 at 5:26 PM
My first post here on our research 🥳. Two preprints from my lab at Yale and Dr. Lingyan Shi’s lab at UCSD report same tissue section multi-modal spatial omics mapping! Please check them out. 🤩