Simon Couvreur 🔰
simoncouv.bsky.social
Simon Couvreur 🔰
@simoncouv.bsky.social
Epidemiology, stats, genetics
Reposted by Simon Couvreur 🔰
I'm doing a workshop on R package development with Positron on Jan 15 2026. Register for the virtual workshop here: sites.google.com/view/dariia-... I'll cover devtools, usethis, testthat, covr, and a few AI tools along the way to help. #Rstats
October 31, 2025 at 9:56 AM
Reposted by Simon Couvreur 🔰
Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change.

Ie: it's not us (Samtools team)! Be warned
September 15, 2025 at 8:40 AM
Reposted by Simon Couvreur 🔰
At next week's RSS conference I'll be presenting a poster (a first for me...it's about time!)

"Tetraplot displays of UK General Election results" shows how to graph GE 2024 vote shares across 4 parties in a useful way.

Full PDF poster at:
github.com/DavidFirth/t...
August 26, 2025 at 4:11 PM
Reposted by Simon Couvreur 🔰
It's actually not possible to drive a truck from Germany to Kyrgyzstan without passing through Russia. So no surprise that much of what Germany says gets exported to Kyrgyzstan (black) never actually gets there (blue). Kyrgyzstan is just what gets written on the invoice. Stuff never goes there...
August 24, 2025 at 11:15 AM
Reposted by Simon Couvreur 🔰
Essential, horrifying reading on.ft.com/4m0enBH
Inside Gaza’s ‘death traps’
[FREE TO READ] A US-backed scheme forces hungry Palestinians to trek kilometres for food aid. Many never make it back
on.ft.com
July 21, 2025 at 9:00 AM
Reposted by Simon Couvreur 🔰
Waarschuwing vanuit Helsinki: Europa ‘finlandiseert’
Mijn column in @nrc.nl

www.nrc.nl/nieuws/2025/...
Column | Waarschuwing vanuit Helsinki: Europa ‘finlandiseert’
In Europa: Caroline de Gruyter
www.nrc.nl
July 19, 2025 at 8:40 AM
Reposted by Simon Couvreur 🔰
A long thread about mpox and the context specific nature of outbreaks prompted by the large outbreak of MPXV Clade IIb happening at the moment in Sierra Leone:
May 25, 2025 at 11:29 AM
Reposted by Simon Couvreur 🔰
You might be wondering why we haven't updated outbreak.info for months.

Well, the reason is that GISAID cut our access in January - as they did others. Without telling us.

After a ♾️ back and forth, that is now permanent.

More on that soon - and why GISAID should not be trusted with critical data.
May 28, 2025 at 11:02 PM
Reposted by Simon Couvreur 🔰
Amazing work from our colleagues in Sierra Leone, Nigeria, and elsewhere, making the first sequences available from the ongoing Mpox epidemic in Sierra Leone.

More to come - for now, head over to @pathoplexus.org:

pathoplexus.org/seqsets/PP_S...
Pathoplexus | SeqSets
Pathoplexus is a new, open-source database dedicated to the efficient sharing of human viral pathogen genomic data, fostering global collaboration and public health response.
pathoplexus.org
May 27, 2025 at 8:28 PM
Reposted by Simon Couvreur 🔰
On June 13, we will have a workshop on Using LLMs by @hadley.nz
More info: bit.ly/4jmEAJW
Please share!
#RStats #EconSky #AcademicSky
April 19, 2025 at 8:45 AM
Reposted by Simon Couvreur 🔰
Science and health drive Sciensano's mission 🔬

We contribute daily to:
✅ Monitoring epidemics
✅ Ensuring food/environmental safety
✅ Promoting healthy lifestyles
✅ Researching human and animal health.

👉 Follow us for updates on public health news!
January 23, 2025 at 9:05 AM
Reposted by Simon Couvreur 🔰
Ok here’s a thread of feeds that aren’t topic themed but utilitarian and do things like show you different versions of your timeline or provide services that should be official Bluesky features. 🧵
Would y’all want a thread of helpful feeds that are basically utilitarian and make the experience of Bluesky better by, for example, showing you different versions of your timeline and things like that?
November 27, 2024 at 7:25 PM
Reposted by Simon Couvreur 🔰
We've put together an #Epidemiology / #EpiSky starter pack with some of our members & friends! Please share!

TESTIMONIALS
'The original data scientists' - @miguelhernan.bsky.social
'The new rock stars' - @nytimes.com
'A science of high importance' - @natureportfolio.bsky.social

go.bsky.app/K6DXCGi
November 12, 2024 at 5:06 PM