SeqCode
@seqcode.bsky.social
SeqCode is the nomenclature code for prokaryotes in which genome sequences serve as nomenclatural types for naming new species. It enables the registration and validation of names through the central repository, the SeqCode Registry (https://seqco.de/)
Part 2 of our #SeqCode video series is here!
This time, we dive into #Latin and #name formation, presented by Dr. Dominik Berrens from Johannes Gutenberg-Universität in Mainz.
🍿 Enjoy share, and don't be shy - ask questions in the comments!
#Nomenclature #Taxonomy
www.youtube.com/watch?v=eldx...
This time, we dive into #Latin and #name formation, presented by Dr. Dominik Berrens from Johannes Gutenberg-Universität in Mainz.
🍿 Enjoy share, and don't be shy - ask questions in the comments!
#Nomenclature #Taxonomy
www.youtube.com/watch?v=eldx...
A Primer in Latin for Prokaryotic Nomenclature
YouTube video by SeqCode
www.youtube.com
May 25, 2025 at 5:31 PM
Part 2 of our #SeqCode video series is here!
This time, we dive into #Latin and #name formation, presented by Dr. Dominik Berrens from Johannes Gutenberg-Universität in Mainz.
🍿 Enjoy share, and don't be shy - ask questions in the comments!
#Nomenclature #Taxonomy
www.youtube.com/watch?v=eldx...
This time, we dive into #Latin and #name formation, presented by Dr. Dominik Berrens from Johannes Gutenberg-Universität in Mainz.
🍿 Enjoy share, and don't be shy - ask questions in the comments!
#Nomenclature #Taxonomy
www.youtube.com/watch?v=eldx...
A brief introduction to the #SeqCode is now online!
Check it out, share it with your colleagues, and let us know what you think!
Bravo to @rodriguez-r.bsky.social for preparing and recording this!
Part# 1
www.youtube.com/watch?v=3-wk...
Check it out, share it with your colleagues, and let us know what you think!
Bravo to @rodriguez-r.bsky.social for preparing and recording this!
Part# 1
www.youtube.com/watch?v=3-wk...
A Brief Introduction to the SeqCode
YouTube video by SeqCode
www.youtube.com
May 25, 2025 at 5:21 PM
A brief introduction to the #SeqCode is now online!
Check it out, share it with your colleagues, and let us know what you think!
Bravo to @rodriguez-r.bsky.social for preparing and recording this!
Part# 1
www.youtube.com/watch?v=3-wk...
Check it out, share it with your colleagues, and let us know what you think!
Bravo to @rodriguez-r.bsky.social for preparing and recording this!
Part# 1
www.youtube.com/watch?v=3-wk...
Happy classifying and naming!
It's Taxonomy Recognition Day! 🧡💙💚
Our partners are organising events all around Europe: 🇧🇪🇩🇪🇩🇰🇪🇸🇫🇮🇫🇷🇬🇷🇮🇹🇳🇱🇳🇴🇦🇹🇵🇹🇨🇿🇸🇪...
You can still help raise awareness about the importance of Taxonomy for Biodiversity and Natural Sciences by participating in the #NameItToSaveIt campaign! 👇
#tettriseu #taxonomy #biodiversity
Our partners are organising events all around Europe: 🇧🇪🇩🇪🇩🇰🇪🇸🇫🇮🇫🇷🇬🇷🇮🇹🇳🇱🇳🇴🇦🇹🇵🇹🇨🇿🇸🇪...
You can still help raise awareness about the importance of Taxonomy for Biodiversity and Natural Sciences by participating in the #NameItToSaveIt campaign! 👇
#tettriseu #taxonomy #biodiversity
May 23, 2025 at 1:31 PM
Happy classifying and naming!
Zombie names are creating worries among botanists (and not only)...
We think we have discovered a "feature" of LLMs that will cause havoc for taxonomists and nomenclature people. They are likely to pollute the literature and databases with hallucinated junk names. 🧪 #botany #taxonomy #systematics #nomenclature #biodiversity
stories.rbge.org.uk/archives/40107
stories.rbge.org.uk/archives/40107
Will generative AI lead to the zombie name apocalypse?
An online discussion about exchanging seeds of a new species called Meconopsis jiajinshanensis led to the Chinese botanical website iplant.cn and the page for Meconopsis balangensis var. atrata.
...
stories.rbge.org.uk
May 22, 2025 at 12:47 PM
Zombie names are creating worries among botanists (and not only)...
Saving microbes might sound like a crazy idea to some, but naming them could actually help protect them too. Imagine if all Lactobacillus spp. suddenly disappeared from your gut… you'd better name them!
#Taxonomy #Nomenclature #Microbes
#Taxonomy #Nomenclature #Microbes
What is the Taxonomy Recognition Day, and why do we celebrate it on May 23?
#tettriseu replies! 👇
youtu.be/t_3ZMHTQnbI?...
Don't forget to participate in our #nameittosaveit campaign!
@smnstuttgart.bsky.social @mnhn.fr @naturalis.bsky.social @nhmwien.bsky.social @eurotaxonomy.cetaf.org
#tettriseu replies! 👇
youtu.be/t_3ZMHTQnbI?...
Don't forget to participate in our #nameittosaveit campaign!
@smnstuttgart.bsky.social @mnhn.fr @naturalis.bsky.social @nhmwien.bsky.social @eurotaxonomy.cetaf.org
Taxonomy Recognition Day
YouTube video by TETTRIsEU
youtu.be
May 22, 2025 at 7:29 AM
Saving microbes might sound like a crazy idea to some, but naming them could actually help protect them too. Imagine if all Lactobacillus spp. suddenly disappeared from your gut… you'd better name them!
#Taxonomy #Nomenclature #Microbes
#Taxonomy #Nomenclature #Microbes
Reposted by SeqCode
Quentin Groom, Stream Leader at #TETTRIsEU, explains why we released a #PolicyBrief on Biological #Nomenclature.
"There is a gap we shall fill in how we work together with #scientists from all over the world..."
You can read and download the PB here tettris.eu/publications/
#Taxonomy4Science
"There is a gap we shall fill in how we work together with #scientists from all over the world..."
You can read and download the PB here tettris.eu/publications/
#Taxonomy4Science
February 25, 2025 at 9:41 AM
Quentin Groom, Stream Leader at #TETTRIsEU, explains why we released a #PolicyBrief on Biological #Nomenclature.
"There is a gap we shall fill in how we work together with #scientists from all over the world..."
You can read and download the PB here tettris.eu/publications/
#Taxonomy4Science
"There is a gap we shall fill in how we work together with #scientists from all over the world..."
You can read and download the PB here tettris.eu/publications/
#Taxonomy4Science
Reposted by SeqCode
This paper is part of a special issue of SAM partnered with
#seqcode, as we also propose names for two novel genera within the MB11C04 family, as well as suggest a non-alphanumeric name, Seribacteraceae. Check it out!
#seqcode, as we also propose names for two novel genera within the MB11C04 family, as well as suggest a non-alphanumeric name, Seribacteraceae. Check it out!
Redirecting
doi.org
December 5, 2024 at 10:56 AM
This paper is part of a special issue of SAM partnered with
#seqcode, as we also propose names for two novel genera within the MB11C04 family, as well as suggest a non-alphanumeric name, Seribacteraceae. Check it out!
#seqcode, as we also propose names for two novel genera within the MB11C04 family, as well as suggest a non-alphanumeric name, Seribacteraceae. Check it out!
Reposted by SeqCode
Very happy to share that the first manuscript of my PhD with
@cotoorellana.bsky.social
in #MolEcol @mpimarinemicrobio.bsky.social
is published! We characterise a family of Verrucomicrobiota in the context of spring blooms, revealing their specialisation in potential complex glycan degradation
@cotoorellana.bsky.social
in #MolEcol @mpimarinemicrobio.bsky.social
is published! We characterise a family of Verrucomicrobiota in the context of spring blooms, revealing their specialisation in potential complex glycan degradation
December 5, 2024 at 10:56 AM
Very happy to share that the first manuscript of my PhD with
@cotoorellana.bsky.social
in #MolEcol @mpimarinemicrobio.bsky.social
is published! We characterise a family of Verrucomicrobiota in the context of spring blooms, revealing their specialisation in potential complex glycan degradation
@cotoorellana.bsky.social
in #MolEcol @mpimarinemicrobio.bsky.social
is published! We characterise a family of Verrucomicrobiota in the context of spring blooms, revealing their specialisation in potential complex glycan degradation
A 6-month discussion on the revision of the #ICNP is underway, including #Section_10 to regulate the #Candidatus names. Pro-statuses will be added to the names with various nomenclature types 🤔.
Please share your thoughts:
icnp-revision.slack.com
How to join: doi.org/10.1099/ijse...
#SeqCode
Please share your thoughts:
icnp-revision.slack.com
How to join: doi.org/10.1099/ijse...
#SeqCode
Slack
icnp-revision.slack.com
February 26, 2025 at 3:09 PM
A 6-month discussion on the revision of the #ICNP is underway, including #Section_10 to regulate the #Candidatus names. Pro-statuses will be added to the names with various nomenclature types 🤔.
Please share your thoughts:
icnp-revision.slack.com
How to join: doi.org/10.1099/ijse...
#SeqCode
Please share your thoughts:
icnp-revision.slack.com
How to join: doi.org/10.1099/ijse...
#SeqCode
"MIRRI-ERIC fully supports the importance of maintaining physical type strains as NTs, while also recommending genome sequence data that meet SeqCode's quality standards as additional NTs." 👏
#Nomenclature #SeqCode #Taxonomy #genomes
#Nomenclature #SeqCode #Taxonomy #genomes
In recent discussions, the rules on prokaryotic nomenclature have sparked debate for various reasons. Our team (MIRRI-ERIC) presents a solution to harmonize ICNP and SeqCode, benefiting microbial ecologists and microbiologists alike. read more: www.sciencedirect.com/science/arti... #nomenclature
MIRRI-ERIC's position on the recent evolution of the international code of nomenclature of prokaryotes
www.sciencedirect.com
February 13, 2025 at 10:27 AM
"MIRRI-ERIC fully supports the importance of maintaining physical type strains as NTs, while also recommending genome sequence data that meet SeqCode's quality standards as additional NTs." 👏
#Nomenclature #SeqCode #Taxonomy #genomes
#Nomenclature #SeqCode #Taxonomy #genomes
This is a great study, and both codes are doing their best to serve our scientific community. The SeqCode recognizes names validly published under the ICNP and their priorities; thus, Patescibacteriota it is. We hope this promotes the reuse of existing names where possible.
A new chapter in the ICNP-SeqCode battle: Should the phylum Patescibacteria be called Minisyncoccota or Patescibacteriota? :
www.microbiologyresearch.org/content/jour...
academic.oup.com/ismecommun/a...
www.microbiologyresearch.org/content/jour...
academic.oup.com/ismecommun/a...
Minisyncoccus archaeiphilus gen. nov., sp. nov., a mesophilic, obligate parasitic bacterium and proposal of Minisyncoccaceae fam. nov., Minisyncoccales ord. nov., Minisyncoccia class. nov. and Minisyn...
In the domain Bacteria, one of the largest, most diverse and environmentally ubiquitous phylogenetic groups, Candidatus Patescibacteria (also known as candidate phyla radiation/CPR), remains poorly ch...
www.microbiologyresearch.org
February 12, 2025 at 1:50 PM
This is a great study, and both codes are doing their best to serve our scientific community. The SeqCode recognizes names validly published under the ICNP and their priorities; thus, Patescibacteriota it is. We hope this promotes the reuse of existing names where possible.
Later synonym (phylum name) under the SeqCode:
Patescibacteriota (ex Rinke et al., 2013) Dutkiewicz et al., 2024
Patescibacteriota (ex Rinke et al., 2013) Dutkiewicz et al., 2024
And now a synonym under the ICNP... 🫠
www.microbiologyresearch.org/content/jour...
www.microbiologyresearch.org/content/jour...
Minisyncoccus archaeiphilus gen. nov., sp. nov., a mesophilic, obligate parasitic bacterium and proposal of Minisyncoccaceae fam. nov., Minisyncoccales ord. nov., Minisyncoccia class. nov. and Minisyn...
In the domain Bacteria, one of the largest, most diverse and environmentally ubiquitous phylogenetic groups, Candidatus Patescibacteria (also known as candidate phyla radiation/CPR), remains poorly ch...
www.microbiologyresearch.org
February 12, 2025 at 1:32 PM
Later synonym (phylum name) under the SeqCode:
Patescibacteriota (ex Rinke et al., 2013) Dutkiewicz et al., 2024
Patescibacteriota (ex Rinke et al., 2013) Dutkiewicz et al., 2024
Originally defined by Rinke et al. (2013) as Candidatus Patescibacteria, the phylum #Patescibacteriota now has a validly published name and an official type!
Explore the lifestyle, biogeography, and metabolic capabilities of its type genus, #Patescibacterium, here: doi.org/10.1093/isme...
#SeqCode
Explore the lifestyle, biogeography, and metabolic capabilities of its type genus, #Patescibacterium, here: doi.org/10.1093/isme...
#SeqCode
Proposal of Patescibacterium danicum gen. nov., sp. nov. in the ubiquitous bacterial phylum Patescibacteriota phyl. nov.
Abstract. Candidatus Patescibacteria is a diverse bacterial phylum that is notable for members with ultrasmall cell size, reduced genomes, limited metaboli
doi.org
February 11, 2025 at 7:05 PM
Originally defined by Rinke et al. (2013) as Candidatus Patescibacteria, the phylum #Patescibacteriota now has a validly published name and an official type!
Explore the lifestyle, biogeography, and metabolic capabilities of its type genus, #Patescibacterium, here: doi.org/10.1093/isme...
#SeqCode
Explore the lifestyle, biogeography, and metabolic capabilities of its type genus, #Patescibacterium, here: doi.org/10.1093/isme...
#SeqCode
"...nature needs to be understood and named in a stable, universal, operationally neutral, and transcultural manner."
From a collective international appeal on the stability of biological nomenclature.
Read more: doi.org/10.1093/bios...
#Nomenclature #names #Biodiversity
From a collective international appeal on the stability of biological nomenclature.
Read more: doi.org/10.1093/bios...
#Nomenclature #names #Biodiversity
doi.org
January 28, 2025 at 3:00 PM
"...nature needs to be understood and named in a stable, universal, operationally neutral, and transcultural manner."
From a collective international appeal on the stability of biological nomenclature.
Read more: doi.org/10.1093/bios...
#Nomenclature #names #Biodiversity
From a collective international appeal on the stability of biological nomenclature.
Read more: doi.org/10.1093/bios...
#Nomenclature #names #Biodiversity
Did you know that the #GTDB phylum #CSP1-3 is now called #Sysuimicrobiota?
This new name originates from its type genus, which is named after Sun Yat-Sen University (SYSU) in China.
Explore all newly named members here: registry.seqco.de/registers/r:...
Read: doi.org/10.1093/nsr/...
#SeqCode
This new name originates from its type genus, which is named after Sun Yat-Sen University (SYSU) in China.
Explore all newly named members here: registry.seqco.de/registers/r:...
Read: doi.org/10.1093/nsr/...
#SeqCode
Register list for 44 new names including Fervidifonticultor octavus sp. nov. | SeqCode Registry
registry.seqco.de
January 27, 2025 at 7:34 PM
Did you know that the #GTDB phylum #CSP1-3 is now called #Sysuimicrobiota?
This new name originates from its type genus, which is named after Sun Yat-Sen University (SYSU) in China.
Explore all newly named members here: registry.seqco.de/registers/r:...
Read: doi.org/10.1093/nsr/...
#SeqCode
This new name originates from its type genus, which is named after Sun Yat-Sen University (SYSU) in China.
Explore all newly named members here: registry.seqco.de/registers/r:...
Read: doi.org/10.1093/nsr/...
#SeqCode
Read more about the code: doi.org/10.1038/s415...
Explore the SeqCode Registry: registry.seqco.de
#SeqCode #Nomenclature #Genomes #Bacteria #Archaea
Explore the SeqCode Registry: registry.seqco.de
#SeqCode #Nomenclature #Genomes #Bacteria #Archaea
SeqCode: a nomenclatural code for prokaryotes described from sequence data - Nature Microbiology
SeqCode is the result of a community effort to unify nomenclature for uncultured and cultured prokaryotes using genome sequences.
doi.org
January 27, 2025 at 9:40 AM
Read more about the code: doi.org/10.1038/s415...
Explore the SeqCode Registry: registry.seqco.de
#SeqCode #Nomenclature #Genomes #Bacteria #Archaea
Explore the SeqCode Registry: registry.seqco.de
#SeqCode #Nomenclature #Genomes #Bacteria #Archaea
Since 2022, the SeqCode Registry has enabled the valid publication of 700+ names, providing nomenclatural stability and recognition for prokaryotes described without pure cultures. We’re a small but growing community advancing the use of genomic data in naming microorganisms.
#SeqCode #Nomenclature
#SeqCode #Nomenclature
January 27, 2025 at 9:38 AM
Since 2022, the SeqCode Registry has enabled the valid publication of 700+ names, providing nomenclatural stability and recognition for prokaryotes described without pure cultures. We’re a small but growing community advancing the use of genomic data in naming microorganisms.
#SeqCode #Nomenclature
#SeqCode #Nomenclature