Riccardo Vicedomini
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rvicedomini.bsky.social
Riccardo Vicedomini
@rvicedomini.bsky.social
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CNRS researcher at @irisa-lab.bsky.social‬ / @genscaleteam.bsky.social
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Reposted by Riccardo Vicedomini
jlipovac.bsky.social
I am happy to share our new preprint introducing MADRe - a pipeline for Metagenomic Assembly-Driven Database Reduction, enabling accurate and computationally efficient strain-level metagenomic classification.

🔗https://www.biorxiv.org/content/10.1101/2025.05.12.653324v1
1/9
May 16, 2025 at 8:37 AM
Reposted by Riccardo Vicedomini
rayanchikhi.bsky.social
We have updated all Logan contigs (now at version 1.1)! Contiguity has been much improved (2x) and a duplicated k-mers bug has been fixed. More information and changelog here: github.com/IndexThePlan...
github.com
February 3, 2025 at 5:17 PM
Reposted by Riccardo Vicedomini
camiladuitama.bsky.social
🧬 Excited to share our latest work, MUSET 🌭, a new tool for creating abundance unitig matrices from sequencing data. It was published yesterday in Oxford Bioinformatics if you want to have a look👀 :

academic.oup.com/bioinformati...

Let's break it down:
MUSET: Set of utilities for constructing abundance unitig matrices from sequencing data
AbstractSummary. MUSET is a novel set of utilities designed to efficiently construct abundance unitig matrices from sequencing data. Unitig matrices extend
academic.oup.com
February 4, 2025 at 2:47 PM